AT2G38390

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002716
Physical Location & Seq
Forward (+)
16079679 .. 16081671
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38390.1

Sequence Viewer

Length: 1050 bp
ATGGGGTTTTCGTCTTCATTATCTTGCAGTGCTATGGGAGCCCTAATAGTGGGTTGCCTTCTGCTTCAAGCATCAAACTCTAATGCTCAGTTGAGACCTGACTTCTACTTCAGGACTTGCCCACCTATTTTCAACATCATTGGGGATACCATCGTCAATGAGCTGCGGACTGATCCTCGTATTGCCGCGAGCCTCCTTCGGCTTCACTTCCATGACTGCTTTGTTCGTGGTTGTGATGCATCGATCTTGCTTGACAATTCCACATCATTCCGGACCGAGAAAGATGCTGCTCCAAACAAAAATTCGGTTCGAGGGTTCGATGTCATAGATAGAATGAAAGCAGCCATTGAGAGAGCTTGCCCAAGAACAGTTTCTTGCGCAGATATTATCACCATCGCCTCTCAGATATCAGTTCTTTTGTCTGGCGGTCCATGGTGGCCAGTTCCGTTGGGGAGAAGAGACAGCGTAGAAGCTTTCTTCGCTCTGGCTAATACAGCTCTTCCCTCTCCATTTTCCACTCTTACTCAACTTAAAACAGCTTTTGCTGACGTTGGCCTAAACCGCCCTTCGGATTTAGTCGCCCTCTCCGGTGGTCACACATTTGGAAAAGCACAATGCCAATTCGTGACACCTCGTCTTTACAACTTCAACGGTACCAACAGACCAGACCCAAGTTTGAACCCAACTTACCTCGTTGAACTCCGTCGATTGTGTCCTCAAAACGGAAACGGCACCGTTCTGGTTAACTTCGATTCCGTGACTCCAACTACTTTCGATAGACAATATTACACCAATCTTCTTAATGGGAAAGGTTTGATTCAGAGTGACCAAGTGCTTTTCTCAACTCCAGGAGCTGATACGATTCCACTAGTAAACCAATACAGCAGCAACACGTTCGTGTTCTTTGGAGCATTCGTTGATGCAATGATTAGGATGGGAAATCTTAAACCTTTGACTGGAACTCAAGGAGAGATAAGACAGAATTGTAGGGTTGTGAATCCAAGAATTAGGGTTGTGGAGAACGACGATGGTGTTGTGAGTTCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0002215 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0022414 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0048046 GO:0048367 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0090567 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

349

Amino Acids

38.1

Weight (kDa)

8.34

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 51 - 297 8.2e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 379
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 2 cut(s) 653, 731
AccII CGCG 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 4 cut(s) 166, 186, 426, 562
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 4 cut(s) 49, 568, 722, 956
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 5 cut(s) 68, 133, 649, 679, 698
AhdI GACNNNNNGTC 1 cut(s) 633
AhlI ACTAGT 1 cut(s) 868
AjnI CCWGG 1 cut(s) 847
AjuI GAANNNNNNNTTGG 4 cut(s) 286, 318, 355, 387
AleI CACNNNNGTG 1 cut(s) 896
AluBI AGCT 6 cut(s) 163, 356, 473, 497, 539, 854
AluI AGCT 6 cut(s) 163, 356, 473, 497, 539, 854
Alw26I GTCTC 2 cut(s) 88, 453
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 854
Aor13HI TCCGGA 1 cut(s) 270
AoxI GGCC 2 cut(s) 437, 553
ApeKI GCWGC 4 cut(s) 163, 287, 341, 885
ApoI RAATTY 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 370
Asp718I GGTACC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 273, 428
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 2 cut(s) 273, 428
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BalI TGGCCA 1 cut(s) 439
BanI GGYRCC 2 cut(s) 653, 731
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 150, 274, 353, 897
BccI CCATC 4 cut(s) 158, 401, 928, 1022
BceAI ACGGC 1 cut(s) 745
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 877, 911
BciT130I CCWGG 1 cut(s) 849
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 88, 453
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 1 cut(s) 869
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 5 cut(s) 164, 186, 288, 342, 886
BlsI GCNGC 5 cut(s) 165, 187, 289, 343, 887
Bme1390I CCNGG 1 cut(s) 849
Bme18I GGWCC 2 cut(s) 273, 428
BmeRI GACNNNNNGTC 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 273, 428
BmiI GGNNCC 3 cut(s) 40, 655, 733
BmrFI CCNGG 1 cut(s) 849
BmsI GCATC 5 cut(s) 80, 226, 248, 274, 910
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 948
Bsa29I ATCGAT 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 431
BsaWI WCCGGW 2 cut(s) 270, 587
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 568, 722, 956
Bse1I ACTGG 2 cut(s) 440, 961
Bse3DI GCAATG 1 cut(s) 930
BseAI TCCGGA 1 cut(s) 270
BseBI CCWGG 1 cut(s) 849
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 939
BseLI CCNNNNNNNGG 4 cut(s) 49, 568, 722, 956
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 2 cut(s) 101, 416
BseNI ACTGG 2 cut(s) 440, 961
BseXI GCAGC 4 cut(s) 150, 274, 353, 897
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 439, 555
BshNI GGYRCC 2 cut(s) 653, 731
BshVI ATCGAT 1 cut(s) 242
BsiSI CCGG 2 cut(s) 271, 588
BslI CCNNNNNNNGG 4 cut(s) 49, 568, 722, 956
BsmAI GTCTC 2 cut(s) 88, 453
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 2 cut(s) 439, 555
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 43
Bsp13I TCCGGA 1 cut(s) 270
Bsp143I GATC 2 cut(s) 172, 243
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 4 cut(s) 166, 186, 426, 562
BspANI GGCC 2 cut(s) 439, 555
BspCNI CTCAG 2 cut(s) 100, 415
BspDI ATCGAT 1 cut(s) 242
BspEI TCCGGA 1 cut(s) 270
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 40, 655, 733
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 653, 731
BspTNI GGTCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 930
BsrI ACTGG 2 cut(s) 440, 961
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 2 cut(s) 172, 243
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 3 cut(s) 370, 653, 736
Bst6I CTCTTC 2 cut(s) 451, 504
BstC8I GCNNGC 2 cut(s) 190, 358
BstDEI CTNAG 2 cut(s) 87, 402
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 939
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 2 cut(s) 175, 246
BstMAI GTCTC 2 cut(s) 88, 453
BstMBI GATC 2 cut(s) 172, 243
BstMWI GCNNNNNNNGC 4 cut(s) 38, 479, 494, 561
BstNI CCWGG 1 cut(s) 849
BstSCI CCNGG 1 cut(s) 847
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 4 cut(s) 150, 274, 353, 897
BstV2I GAAGAC 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 242
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 439, 555
BsuTUI ATCGAT 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 431
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 939
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 190, 358
CaiI CAGNNNCTG 1 cut(s) 854
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 273, 428
ClaI ATCGAT 1 cut(s) 242
CpoI CGGWCCG 1 cut(s) 273
Csp6I GTAC 1 cut(s) 654
CspI CGGWCCG 1 cut(s) 273
CviAII CATG 2 cut(s) 212, 432
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 2 cut(s) 87, 402
DpnI GATC 2 cut(s) 174, 245
DpnII GATC 2 cut(s) 172, 243
DriI GACNNNNNGTC 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 2 cut(s) 451, 504
Eam1105I GACNNNNNGTC 1 cut(s) 633
EarI CTCTTC 2 cut(s) 451, 504
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 408
Eco47I GGWCC 2 cut(s) 273, 428
Eco57I CTGAAG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 847
EcoRV GATATC 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 2 cut(s) 215, 435
FaiI YATR 4 cut(s) 35, 213, 326, 433
FatI CATG 2 cut(s) 211, 431
Fnu4HI GCNGC 5 cut(s) 164, 186, 288, 342, 886
FokI GGATG 1 cut(s) 946
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 5 cut(s) 164, 186, 288, 342, 886
FspBI CTAG 1 cut(s) 869
FspI TGCGCA 1 cut(s) 379
GlaI GCGC 1 cut(s) 379
GluI GCNGC 5 cut(s) 164, 186, 288, 342, 886
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 2 cut(s) 439, 555
HapII CCGG 2 cut(s) 271, 588
HhaI GCGC 1 cut(s) 380
Hin1II CATG 2 cut(s) 215, 435
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 5 cut(s) 752, 760, 817, 862, 997
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 2 cut(s) 271, 588
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 745, 874
Hpy188I TCNGA 4 cut(s) 405, 571, 822, 1049
Hpy188III TCNNGA 3 cut(s) 112, 271, 625
Hpy8I GTNNAC 2 cut(s) 745, 874
Hpy99I CGWCG 2 cut(s) 708, 1028
HpyAV CCTTC 3 cut(s) 68, 206, 576
HpyCH4III ACNGT 3 cut(s) 370, 653, 736
HpyCH4IV ACGT 2 cut(s) 549, 893
HpyCH4V TGCA 3 cut(s) 27, 239, 923
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 479, 494, 561
HpyF3I CTNAG 2 cut(s) 87, 402
HpySE526I ACGT 2 cut(s) 549, 893
Hsp92II CATG 2 cut(s) 215, 435
HspAI GCGC 1 cut(s) 378
Kpn2I TCCGGA 1 cut(s) 270
KpnI GGTACC 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 2 cut(s) 172, 243
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 4 cut(s) 38, 295, 851, 908
Lsp1109I GCAGC 4 cut(s) 150, 274, 353, 897
LweI GCATC 5 cut(s) 80, 226, 248, 274, 910
MaeI CTAG 1 cut(s) 869
MaeII ACGT 2 cut(s) 549, 893
MaeIII GTNAC 4 cut(s) 593, 625, 757, 824
MalI GATC 2 cut(s) 174, 245
MboI GATC 2 cut(s) 172, 243
MboII GAAGA 5 cut(s) 6, 468, 469, 491, 788
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 5 cut(s) 256, 301, 620, 982, 1005
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 9 cut(s) 186, 203, 305, 409, 514, 593, 642, 701, 726
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 1 cut(s) 241
MroI TCCGGA 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 370
MscI TGGCCA 1 cut(s) 439
MseI TTAA 4 cut(s) 531, 744, 801, 945
MslI CAYNNNNRTG 2 cut(s) 210, 896
Msp20I TGGCCA 1 cut(s) 439
MspI CCGG 2 cut(s) 271, 588
MspR9I CCNGG 1 cut(s) 849
Mva1269I GAATGC 1 cut(s) 911
MvaI CCWGG 1 cut(s) 849
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 38, 479, 494, 561
NcoI CCATGG 1 cut(s) 431
NdeII GATC 2 cut(s) 172, 243
NlaIII CATG 2 cut(s) 215, 435
NlaIV GGNNCC 3 cut(s) 40, 655, 733
NmuCI GTSAC 4 cut(s) 593, 625, 757, 824
NsbI TGCGCA 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 504
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 4 cut(s) 752, 817, 862, 997
PfoI TCCNGGA 1 cut(s) 847
PkrI GCNGC 5 cut(s) 165, 187, 289, 343, 887
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 847
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 3 cut(s) 40, 655, 733
PspPI GGNCC 2 cut(s) 273, 428
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
PstNI CAGNNNCTG 1 cut(s) 854
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
RseI CAYNNNNRTG 2 cut(s) 210, 896
Rsr2I CGGWCCG 1 cut(s) 273
RsrII CGGWCCG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 4 cut(s) 531, 744, 801, 945
SatI GCNGC 5 cut(s) 164, 186, 288, 342, 886
Sau3AI GATC 2 cut(s) 172, 243
Sau96I GGNCC 2 cut(s) 273, 428
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 1 cut(s) 849
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 5 cut(s) 80, 226, 248, 274, 910
SinI GGWCC 2 cut(s) 273, 428
SmiMI CAYNNNNRTG 2 cut(s) 210, 896
SmlI CTYRAG 1 cut(s) 963
SmoI CTYRAG 1 cut(s) 963
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 5 cut(s) 256, 301, 620, 982, 1005
SsiI CCGC 4 cut(s) 166, 186, 426, 562
SspI AATATT 1 cut(s) 785
SspMI CTAG 1 cut(s) 869
StyD4I CCNGG 1 cut(s) 847
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 370, 653, 736
TaiI ACGT 2 cut(s) 552, 896
TaqI TCGA 6 cut(s) 242, 310, 318, 706, 750, 774
TaqII GACCGA 1 cut(s) 290
TasI AATT 5 cut(s) 256, 301, 620, 982, 1005
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 4 cut(s) 752, 817, 862, 997
Tru1I TTAA 4 cut(s) 531, 744, 801, 945
Tru9I TTAA 4 cut(s) 531, 744, 801, 945
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 4 cut(s) 593, 625, 757, 824
TseI GCWGC 4 cut(s) 163, 287, 341, 885
Tsp45I GTSAC 4 cut(s) 593, 625, 757, 824
TspDTI ATGAA 2 cut(s) 6, 350
TspGWI ACGGA 4 cut(s) 435, 692, 738, 745
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 273, 428
XapI RAATTY 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 1 cut(s) 869
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.