pycom03g01160

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002716
Physical Location & Seq
Reverse (-)
907421 .. 909728
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01160.1

Sequence Viewer

Length: 1053 bp
ATGCCTCCTTATAGTGCTCAATTGTATTACAGATATGTTTTGGCAATGTTACTAATCTTGTGTGCAAGTGCAGGATGTGGTGATGCTCAGTTGACTCCTACGTTTTATGATGAATCATGCCCGAATGCCACCAGCATTGTGCGTGGAGTCATTCAAGAGGCTCTGCAGACCGATCCCCGGATTACTGCCAGCCTCACTCGGCTTCACTTCCACGATTGCTTCGTCAATGGTTGCGATCGATCAATTCTGCTGGACAACAGTACCAATCCTAACAGTACCATTGACAGCGAAAAAACAGCAATTGCAAATAACAACTCAGCCAGAGGATTTGATGTTGTGGACAATATCAAGACTGCATTGGAGAATGCTTGTCCCGCCGTCGTTTCCTGTGCTGATATTCTCGCCATTGCTGCCGAGGAATCTGTTGTTTTGTCTGGAGGTTCTTCATGGACAGTGCTATTAGGAAGAAGGGATAGCTTAACAGCTAATCGCACGGCTGCCAACGAAGCCCTTCCAGGTCCTACTTTTACACTTGACGAACTCGTGGCCAACTTCTTAGCTGTAGGCCTCAACACCACGGATCTGGTTGCACTATCTGGTGCTCACACATTTGGGCGTGCTAGATGTCTAACTTTCACTGATCGATTGTATAACTTCACCGGCACAGGCAGTCCTGATCCGACCTTGAACTCAACCTACTTAGAAATATTGAGTGAGATATGCCCACAGAATGGGAATGGTAGTGTATTGACCAATTTGGATCCTGTAACGCCTGACACTTTTGATTCAAAGTATTTCTCGAATCTTCAGGTTGAGGAAGGCTTGCTCCAAAGCGATCAAGAGCTCTTTTCAACTAGCGGGGCTGATACCATCGACATTGTTAACAACTTCAGCGCTAATCAGAGCGCATTCTTTGAGAGTTTCGGGGAATCCATGATAAAAATGGGTAATATAAGCCCGTTGACCGGAACCGAGGGGGAGATTCGATTGAGCTGCCGTAGAGTTAATGGAGAATCATATGGATTAACTGCTACTTTGGTAGCTGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

351

Amino Acids

37.52

Weight (kDa)

4.33

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 299 2.9e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AciI CCGC 2 cut(s) 375, 858
AclWI GGATC 5 cut(s) 167, 588, 671, 755, 768
AcoI YGGCCR 1 cut(s) 546
AcuI CTGAAG 2 cut(s) 791, 874
AfaI GTAC 2 cut(s) 262, 277
AfeI AGCGCT 1 cut(s) 895
AfiI CCNNNNNNNGG 3 cut(s) 177, 731, 965
AgsI TTSAA 4 cut(s) 155, 688, 789, 852
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 6 cut(s) 477, 485, 560, 844, 993, 1043
AluI AGCT 6 cut(s) 477, 485, 560, 844, 993, 1043
Alw21I GWGCWC 3 cut(s) 19, 604, 846
AlwI GGATC 5 cut(s) 167, 588, 671, 755, 768
Aor51HI AGCGCT 1 cut(s) 895
AoxI GGCC 2 cut(s) 546, 565
ApeKI GCWGC 3 cut(s) 410, 497, 993
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 2 cut(s) 896, 908
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 92, 649
AvaII GGWCC 1 cut(s) 518
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BalI TGGCCA 1 cut(s) 548
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 846
BauI CACGAG 1 cut(s) 542
Bbv12I GWGCWC 3 cut(s) 19, 604, 846
BbvI GCAGC 3 cut(s) 397, 484, 980
BccI CCATC 1 cut(s) 878
BceAI ACGGC 3 cut(s) 362, 510, 981
BcgI CGANNNNNNTGC 2 cut(s) 975, 1009
BciT130I CCWGG 1 cut(s) 516
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 2 cut(s) 621, 855
BfmI CTRYAG 2 cut(s) 164, 561
BfoI RGCGCY 1 cut(s) 897
BisI GCNGC 3 cut(s) 411, 498, 994
BlsI GCNGC 3 cut(s) 412, 499, 995
Bme1390I CCNGG 2 cut(s) 178, 516
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 2 cut(s) 762, 970
BmrFI CCNGG 2 cut(s) 178, 516
BmsI GCATC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 178
Bsa29I ATCGAT 2 cut(s) 238, 643
BsaJI CCNNGG 4 cut(s) 176, 414, 576, 972
BsaWI WCCGGW 1 cut(s) 965
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 731, 965
Bse118I RCCGGY 1 cut(s) 659
Bse3DI GCAATG 2 cut(s) 51, 405
BseBI CCWGG 1 cut(s) 516
BseCI ATCGAT 2 cut(s) 238, 643
BseDI CCNNGG 4 cut(s) 176, 414, 576, 972
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 3 cut(s) 177, 731, 965
BseMI GCAATG 2 cut(s) 51, 405
BseMII CTCAG 3 cut(s) 101, 330, 1035
BseXI GCAGC 3 cut(s) 397, 484, 980
BsgI GTGCAG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 548, 567
BshVI ATCGAT 2 cut(s) 238, 643
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 3 cut(s) 19, 604, 846
BsiSI CCGG 3 cut(s) 178, 660, 966
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 3 cut(s) 177, 731, 965
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 3 cut(s) 130, 370, 908
BsnI GGCC 2 cut(s) 548, 567
Bsp1286I GDGCHC 3 cut(s) 19, 604, 846
Bsp143I GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
BspACI CCGC 2 cut(s) 375, 858
BspANI GGCC 2 cut(s) 548, 567
BspCNI CTCAG 3 cut(s) 100, 329, 1036
BspDI ATCGAT 2 cut(s) 238, 643
BspLI GGNNCC 2 cut(s) 762, 970
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 5 cut(s) 167, 588, 671, 755, 768
BsrDI GCAATG 2 cut(s) 51, 405
BsrFI RCCGGY 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 176, 414, 576, 972
BssMI GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
BssSI CACGAG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 260, 275, 454
BstC8I GCNNGC 3 cut(s) 190, 618, 824
BstDEI CTNAG 5 cut(s) 87, 316, 556, 700, 1044
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 897
BstHHI GCGC 2 cut(s) 896, 908
BstKTI GATC 8 cut(s) 175, 238, 242, 583, 643, 679, 763, 838
BstMBI GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 374, 410, 506
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 2 cut(s) 176, 514
BstSFI CTRYAG 2 cut(s) 164, 561
BstV1I GCAGC 3 cut(s) 397, 484, 980
BstX2I RGATCY 2 cut(s) 580, 760
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 580, 760
Bsu15I ATCGAT 2 cut(s) 238, 643
BsuRI GGCC 2 cut(s) 548, 567
BsuTUI ATCGAT 2 cut(s) 238, 643
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 459, 636
Cac8I GCNNGC 3 cut(s) 190, 618, 824
CfoI GCGC 2 cut(s) 896, 908
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 518
ClaI ATCGAT 2 cut(s) 238, 643
Csp6I GTAC 2 cut(s) 261, 276
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 117, 447, 934
CviQI GTAC 2 cut(s) 261, 276
DdeI CTNAG 5 cut(s) 87, 316, 556, 700, 1044
DpnI GATC 8 cut(s) 174, 237, 241, 582, 642, 678, 762, 837
DpnII GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
EaeI YGGCCR 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 844
Eco147I AGGCCT 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 518
Eco47III AGCGCT 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 791, 874
EcoICRI GAGCTC 1 cut(s) 844
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 846
FaeI CATG 3 cut(s) 120, 450, 937
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 116, 446, 933
FauI CCCGC 2 cut(s) 382, 851
FauNDI CATATG 1 cut(s) 1018
Fnu4HI GCNGC 3 cut(s) 411, 498, 994
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 3 cut(s) 411, 498, 994
FspBI CTAG 2 cut(s) 621, 855
GlaI GCGC 2 cut(s) 895, 907
GluI GCNGC 3 cut(s) 411, 498, 994
GsuI CTGGAG 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 897
HaeIII GGCC 2 cut(s) 548, 567
HapII CCGG 3 cut(s) 178, 660, 966
HhaI GCGC 2 cut(s) 896, 908
Hin1II CATG 3 cut(s) 120, 450, 937
Hin6I GCGC 2 cut(s) 894, 906
HinP1I GCGC 2 cut(s) 894, 906
HincII GTYRAC 3 cut(s) 93, 883, 963
HindII GTYRAC 3 cut(s) 93, 883, 963
HinfI GANTC 9 cut(s) 94, 113, 147, 419, 785, 802, 929, 982, 1013
HpaI GTTAAC 1 cut(s) 883
HpaII CCGG 3 cut(s) 178, 660, 966
HphI GGTGA 2 cut(s) 92, 649
Hpy166II GTNNAC 4 cut(s) 93, 340, 883, 963
Hpy188I TCNGA 2 cut(s) 681, 903
Hpy188III TCNNGA 6 cut(s) 155, 349, 435, 674, 799, 839
Hpy8I GTNNAC 4 cut(s) 93, 340, 883, 963
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 462, 521, 812
HpyCH4III ACNGT 3 cut(s) 260, 275, 454
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 6 cut(s) 65, 71, 166, 305, 356, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 410, 506
HpyF3I CTNAG 5 cut(s) 87, 316, 556, 700, 1044
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 3 cut(s) 120, 450, 937
HspAI GCGC 2 cut(s) 894, 906
KspAI GTTAAC 1 cut(s) 883
Kzo9I GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
LmnI GCTCC 1 cut(s) 831
Lsp1109I GCAGC 3 cut(s) 397, 484, 980
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 621, 855
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 48, 766
MalI GATC 8 cut(s) 174, 237, 241, 582, 642, 678, 762, 837
MboI GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
MboII GAAGA 3 cut(s) 435, 477, 797
MfeI CAATTG 2 cut(s) 20, 300
MflI RGATCY 2 cut(s) 580, 760
MhlI GDGCHC 3 cut(s) 19, 604, 846
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 4 cut(s) 20, 243, 300, 754
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 2 cut(s) 88, 156
MmeI TCCRAC 1 cut(s) 704
MnlI CCTC 9 cut(s) 15, 151, 203, 317, 409, 431, 578, 808, 967
Mox20I TGGCCA 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 548
MseI TTAA 5 cut(s) 479, 882, 1005, 1025, 1051
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 3 cut(s) 178, 660, 966
MspR9I CCNGG 2 cut(s) 178, 516
MunI CAATTG 2 cut(s) 20, 300
Mva1269I GAATGC 3 cut(s) 130, 370, 908
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 3 cut(s) 374, 410, 506
NciI CCSGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 1018
NdeII GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
NlaIII CATG 3 cut(s) 120, 450, 937
NlaIV GGNNCC 2 cut(s) 762, 970
NmeAIII GCCGAG 2 cut(s) 178, 439
PceI AGGCCT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 3 cut(s) 130, 370, 908
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 7 cut(s) 113, 419, 785, 802, 929, 982, 1013
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 3 cut(s) 412, 499, 995
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 88, 155
PpsI GAGTC 2 cut(s) 88, 155
PpuMI RGGWCCY 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 846
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 762, 970
PspPI GGNCC 1 cut(s) 518
PspPPI RGGWCCY 1 cut(s) 518
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PstI CTGCAG 1 cut(s) 168
PsuI RGATCY 2 cut(s) 580, 760
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 2 cut(s) 262, 277
RsaNI GTAC 2 cut(s) 261, 276
SacI GAGCTC 1 cut(s) 846
SaqAI TTAA 5 cut(s) 479, 882, 1005, 1025, 1051
SatI GCNGC 3 cut(s) 411, 498, 994
Sau3AI GATC 8 cut(s) 172, 235, 239, 580, 640, 676, 760, 835
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 88, 156
ScrFI CCNGG 2 cut(s) 178, 516
SduI GDGCHC 3 cut(s) 19, 604, 846
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 2 cut(s) 164, 561
SinI GGWCC 1 cut(s) 518
Sse9I AATT 4 cut(s) 20, 243, 300, 754
SseBI AGGCCT 1 cut(s) 567
SsiI CCGC 2 cut(s) 375, 858
SspI AATATT 1 cut(s) 708
SspMI CTAG 2 cut(s) 621, 855
SstI GAGCTC 1 cut(s) 846
StuI AGGCCT 1 cut(s) 567
StyD4I CCNGG 2 cut(s) 176, 514
TaaI ACNGT 3 cut(s) 260, 275, 454
TaiI ACGT 1 cut(s) 104
TaqI TCGA 5 cut(s) 238, 643, 800, 873, 985
TaqII GACCGA 1 cut(s) 185
TasI AATT 4 cut(s) 20, 243, 300, 754
TfiI GAWTC 7 cut(s) 113, 419, 785, 802, 929, 982, 1013
Tru1I TTAA 5 cut(s) 479, 882, 1005, 1025, 1051
Tru9I TTAA 5 cut(s) 479, 882, 1005, 1025, 1051
TscAI CASTG 2 cut(s) 459, 643
TseI GCWGC 3 cut(s) 410, 497, 993
TspDTI ATGAA 2 cut(s) 126, 435
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 2 cut(s) 459, 643
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 621, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.