Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002716

Physical Location & Seq

Genomic Coordinates Forward (+)

87119080 .. 87119358

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG548500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGACAGGGAGTCCTGACCCGACCTTAAACTCGACCTACATAGAAACCTTGAGTGAGATATGCCCACAGAATGGGAATGGGAGTGTCCTAGCCAATTTTGATCCCTCGACACCTGATGCTTTCGACAGCAACTATTTCCCTAATCTTCCAAGTTCACAGGGTCTACTCAAAGCGACCAAGCGCTGTTCTCTACTAGCGGGGCTAACACCATTGACGTTGTTAACAACTTCACTGTTAATCAGACCGCATTCTTTGAAAGCTTTGTGGAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

92

Amino Acids

9.94

Weight (kDa)

5.59

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	5 - 59	2.1e-08	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38380 AT2G38390
malus_domestica	MD03G1012700.v1.1 MD03G1012800.v1.1 MD03G1012900.v1.1 MD03G1013200.v1.1 MD03G1013300.v1.1 MD03G1013600.v1.1 MD03G1013700.v1.1
prunus_persica	Prupe.6G013200_v2.0.a1 Prupe.6G013400_v2.0.a1
pyrus_communis	pycom03g01150 pycom03g01160
rosa_chinensis	RchiOBHm_Chr5g0053991 RchiOBHm_Chr5g0080801 RchiOBHm_Chr5g0080821 RchiOBHm_Chr5g0080921 RchiOBHm_Chr5g0080961
rosa_laevigata	RLG00000036883 RLG00000036884 RLG00000036893 RLG00000036895 RLG00000036898 RLG00000036900
rosa_multiflora	Rmu_sc0003177.1_g000023 Rmu_sc0007121.1_g000003
rosa_rugosa	Rorug05G0471800 Rorug05G0472100.1 Rorug05G0472200
rosa_samantha	Rh5BG548000 Rh5BG548500 Rh5BG548700 Rh5CG571500 Rh5CG571700 Rh5DG559100 Rh5DG559300
rosa_wichuraiana	Rw5G048730 Rw5G048790 Rw5G049310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	2 cut(s)	200, 248
AclWI	GGATC	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	259
AhdI	GACNNNNNGTC	1 cut(s)	12
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwI	GGATC	1 cut(s)	98
Aor51HI	AGCGCT	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	92, 197
BfoI	RGCGCY	1 cut(s)	187
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	2 cut(s)	200, 248
BspDI	ATCGAT	1 cut(s)	274
BspPI	GGATC	1 cut(s)	98
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	274
CviJI	RGCY	3 cut(s)	95, 205, 263
CviKI_1	RGCY	3 cut(s)	95, 205, 263
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	185
FaiI	YATR	2 cut(s)	44, 64
FauI	CCCGC	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	92, 197
GlaI	GCGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	187
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	2 cut(s)	13, 271
HpaI	GTTAAC	1 cut(s)	225
Hpy166II	GTNNAC	3 cut(s)	158, 167, 225
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	3 cut(s)	158, 167, 225
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	218
HspAI	GCGC	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	30, 129, 146
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	92, 197
MaeII	ACGT	1 cut(s)	218
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	1 cut(s)	118
MseI	TTAA	3 cut(s)	29, 224, 239
Mva1269I	GAATGC	1 cut(s)	250
NdeII	GATC	1 cut(s)	103
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	74
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	29, 224, 239
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	22
SetI	ASST	6 cut(s)	29, 41, 53, 118, 221, 265
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	200, 248
SspMI	CTAG	2 cut(s)	92, 197
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	4 cut(s)	35, 110, 126, 274
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	3 cut(s)	29, 224, 239
Tru9I	TTAA	3 cut(s)	29, 224, 239
TscAI	CASTG	1 cut(s)	240
TspRI	CASTG	1 cut(s)	240
Van91I	CCANNNNNTGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	2 cut(s)	92, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.