RchiOBHm_Chr5g0080801

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002716
Physical Location & Seq
Forward (+)
86774267 .. 86775722
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35508

Sequence Viewer

Length: 1068 bp
ATGCCTTCTTCTCTATATCACTGTGCAATGGCAACTACTAGTACTGCAGTTTTCTTTGCATTGTTGATCTTATTGTGTGCAGGAGGATATGGTGAGGCTCAGCTGACCCCGACGTTCTACAATGAAGCATGCCCCGATGTGAATCTCACTAGCATTGTCCGTGGAGTCATTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAACAGTAGCAGTGTCGATGGCATAGACAGCGAGAAAGCAGCCTTTCCGAATGTCAATTCAGCAAGAGGATTTGATGTTGTGGACAAGATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACCTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGCACTATCCGGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACCTTCAAGTTCACAAGGGTCTACTCCAAAGCGACCAAGTGCTGTTTTCGACTAGCGGGGCTGATACCATTGACATGGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

355

Amino Acids

37.81

Weight (kDa)

4.39

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 303 1.1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 838
AccII CGCG 1 cut(s) 633
AciI CCGC 2 cut(s) 510, 873
AclWI GGATC 4 cut(s) 185, 198, 770, 1045
AcoI YGGCCR 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 889
AfaI GTAC 3 cut(s) 43, 555, 1064
AfiI CCNNNNNNNGG 1 cut(s) 746
AgsI TTSAA 3 cut(s) 673, 824, 1006
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 762
AjuI GAANNNNNNNTTGG 2 cut(s) 1017, 1049
AluBI AGCT 6 cut(s) 103, 179, 533, 575, 936, 1058
AluI AGCT 6 cut(s) 103, 179, 533, 575, 936, 1058
Alw21I GWGCWC 1 cut(s) 619
AlwI GGATC 4 cut(s) 185, 198, 770, 1045
AlwNI CAGNNNCTG 1 cut(s) 986
AoxI GGCC 3 cut(s) 454, 580, 765
ApeKI GCWGC 5 cut(s) 203, 311, 425, 512, 1046
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 104
AsuNHI GCTAGC 1 cut(s) 1054
BalI TGGCCA 1 cut(s) 767
BamHI GGATCC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 5 cut(s) 190, 323, 437, 499, 1033
BccI CCATC 4 cut(s) 284, 482, 785, 983
BcgI CGANNNNNNTGC 4 cut(s) 584, 618, 990, 1024
BciT130I CCWGG 1 cut(s) 764
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 5 cut(s) 39, 150, 476, 870, 1055
BfmI CTRYAG 3 cut(s) 45, 576, 1009
BisI GCNGC 5 cut(s) 204, 312, 426, 513, 1047
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 5 cut(s) 205, 313, 427, 514, 1048
BmcAI AGTACT 2 cut(s) 43, 1064
Bme1390I CCNGG 1 cut(s) 764
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 192, 457
BmrFI CCNGG 1 cut(s) 764
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 2 cut(s) 244, 266
BmtI GCTAGC 1 cut(s) 1058
BmuI ACTGGG 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 542, 745
Bsa29I ATCGAT 2 cut(s) 658, 947
BsaAI YACGTR 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 611
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse1I ACTGG 1 cut(s) 637
Bse3DI GCAATG 2 cut(s) 33, 420
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 764
BseCI ATCGAT 2 cut(s) 658, 947
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 493
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMI GCAATG 2 cut(s) 33, 420
BseMII CTCAG 3 cut(s) 113, 585, 1050
BseNI ACTGG 1 cut(s) 637
BseXI GCAGC 5 cut(s) 190, 323, 437, 499, 1033
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 3 cut(s) 456, 582, 767
BshVI ATCGAT 2 cut(s) 658, 947
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 3 cut(s) 456, 582, 767
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 2 cut(s) 510, 873
BspANI GGCC 3 cut(s) 456, 582, 767
BspCNI CTCAG 3 cut(s) 112, 584, 1051
BspDI ATCGAT 2 cut(s) 658, 947
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 192, 457
BspMAI CTGCAG 2 cut(s) 49, 1013
BspOI GCTAGC 1 cut(s) 1058
BspPI GGATC 4 cut(s) 185, 198, 770, 1045
BsrDI GCAATG 2 cut(s) 33, 420
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 4 cut(s) 23, 278, 397, 469
Bst6I CTCTTC 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 3 cut(s) 130, 208, 1056
BstDEI CTNAG 3 cut(s) 99, 571, 1059
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 6 cut(s) 69, 193, 598, 658, 778, 1040
BstMBI GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
BstMWI GCNNNNNNNGC 5 cut(s) 300, 425, 521, 530, 1055
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 3 cut(s) 45, 576, 1009
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 5 cut(s) 190, 323, 437, 499, 1033
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 2 cut(s) 598, 892
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 2 cut(s) 658, 947
BsuRI GGCC 3 cut(s) 456, 582, 767
BsuTUI ATCGAT 2 cut(s) 658, 947
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 4 cut(s) 19, 289, 644, 651
Cac8I GCNNGC 3 cut(s) 130, 208, 1056
CaiI CAGNNNCTG 1 cut(s) 986
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 455
ClaI ATCGAT 2 cut(s) 658, 947
CseI GACGC 1 cut(s) 639
Csp6I GTAC 3 cut(s) 42, 554, 1063
CspCI CAANNNNNGTGG 2 cut(s) 910, 945
CviAII CATG 4 cut(s) 129, 230, 462, 892
CviQI GTAC 3 cut(s) 42, 554, 1063
DdeI CTNAG 3 cut(s) 99, 571, 1059
DpnI GATC 6 cut(s) 68, 192, 597, 657, 777, 1039
DpnII GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 582
Eco57I CTGAAG 1 cut(s) 889
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 259
FaeI CATG 4 cut(s) 132, 233, 465, 895
FaqI GGGAC 1 cut(s) 372
FatI CATG 4 cut(s) 128, 229, 461, 891
FauI CCCGC 1 cut(s) 866
FauNDI CATATG 1 cut(s) 734
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 204, 312, 426, 513, 1047
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 5 cut(s) 204, 312, 426, 513, 1047
FspBI CTAG 5 cut(s) 39, 150, 476, 870, 1055
GlaI GCGC 1 cut(s) 634
GluI GCNGC 5 cut(s) 204, 312, 426, 513, 1047
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 3 cut(s) 456, 582, 767
HapII CCGG 1 cut(s) 612
HgaI GACGC 1 cut(s) 639
HhaI GCGC 1 cut(s) 635
Hin1II CATG 4 cut(s) 132, 233, 465, 895
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 2 cut(s) 898, 1021
HindII GTYRAC 2 cut(s) 898, 1021
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 7 cut(s) 142, 165, 434, 685, 944, 997, 1028
HpaI GTTAAC 2 cut(s) 898, 1021
HpaII CCGG 1 cut(s) 612
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 5 cut(s) 355, 829, 839, 898, 1021
Hpy188I TCNGA 2 cut(s) 321, 918
Hpy188III TCNNGA 4 cut(s) 173, 450, 689, 976
Hpy8I GTNNAC 5 cut(s) 355, 829, 839, 898, 1021
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 4 cut(s) 15, 477, 536, 830
HpyCH4III ACNGT 4 cut(s) 23, 278, 397, 469
HpyCH4IV ACGT 2 cut(s) 113, 196
HpyF10VI GCNNNNNNNGC 5 cut(s) 300, 425, 521, 530, 1055
HpyF3I CTNAG 3 cut(s) 99, 571, 1059
HpySE526I ACGT 2 cut(s) 113, 196
Hsp92II CATG 4 cut(s) 132, 233, 465, 895
HspAI GCGC 1 cut(s) 633
KspAI GTTAAC 2 cut(s) 898, 1021
Kzo9I GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 5 cut(s) 190, 323, 437, 499, 1033
LweI GCATC 2 cut(s) 244, 266
MaeI CTAG 5 cut(s) 39, 150, 476, 870, 1055
MaeII ACGT 2 cut(s) 113, 196
MaeIII GTNAC 1 cut(s) 728
MalI GATC 6 cut(s) 68, 192, 597, 657, 777, 1039
MboI GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
MboII GAAGA 3 cut(s) 443, 492, 1037
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 619
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 3 cut(s) 261, 328, 769
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 3 cut(s) 174, 443, 694
MnlI CCTC 9 cut(s) 77, 88, 221, 332, 446, 469, 550, 790, 983
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 767
MseI TTAA 6 cut(s) 363, 701, 897, 912, 954, 1020
MslI CAYNNNNRTG 2 cut(s) 228, 890
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 3 cut(s) 103, 512, 575
MspI CCGG 1 cut(s) 612
MspR9I CCNGG 1 cut(s) 764
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 5 cut(s) 300, 425, 521, 530, 1055
NdeI CATATG 1 cut(s) 734
NdeII GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
NheI GCTAGC 1 cut(s) 1054
NlaIII CATG 4 cut(s) 132, 233, 465, 895
NlaIV GGNNCC 2 cut(s) 192, 457
NmuCI GTSAC 1 cut(s) 728
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PceI AGGCCT 1 cut(s) 582
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 142, 944, 997, 1028
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 5 cut(s) 205, 313, 427, 514, 1048
PleI GAGTC 3 cut(s) 173, 442, 693
PpsI GAGTC 3 cut(s) 173, 442, 693
Ppu21I YACGTR 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 762
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 2 cut(s) 192, 457
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 2 cut(s) 49, 1013
PstNI CAGNNNCTG 1 cut(s) 986
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 103, 575
RsaI GTAC 3 cut(s) 43, 555, 1064
RsaNI GTAC 3 cut(s) 42, 554, 1063
RseI CAYNNNNRTG 2 cut(s) 228, 890
SaqAI TTAA 6 cut(s) 363, 701, 897, 912, 954, 1020
SatI GCNGC 5 cut(s) 204, 312, 426, 513, 1047
Sau3AI GATC 6 cut(s) 66, 190, 595, 655, 775, 1037
Sau96I GGNCC 1 cut(s) 455
ScaI AGTACT 2 cut(s) 43, 1064
SchI GAGTC 3 cut(s) 174, 443, 694
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 1 cut(s) 619
SfaNI GCATC 2 cut(s) 244, 266
SfcI CTRYAG 3 cut(s) 45, 576, 1009
SmiMI CAYNNNNRTG 2 cut(s) 228, 890
SmlI CTYRAG 2 cut(s) 557, 724
SmoI CTYRAG 2 cut(s) 557, 724
SpeI ACTAGT 1 cut(s) 38
SphI GCATGC 1 cut(s) 132
Sse9I AATT 3 cut(s) 261, 328, 769
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 2 cut(s) 510, 873
SspMI CTAG 5 cut(s) 39, 150, 476, 870, 1055
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 762
TaaI ACNGT 4 cut(s) 23, 278, 397, 469
TaiI ACGT 2 cut(s) 116, 199
TaqI TCGA 7 cut(s) 288, 658, 707, 798, 866, 947, 1000
TasI AATT 3 cut(s) 261, 328, 769
TatI WGTACW 3 cut(s) 41, 553, 1062
TfiI GAWTC 4 cut(s) 142, 944, 997, 1028
Tru1I TTAA 6 cut(s) 363, 701, 897, 912, 954, 1020
Tru9I TTAA 6 cut(s) 363, 701, 897, 912, 954, 1020
TscAI CASTG 4 cut(s) 26, 289, 644, 658
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 5 cut(s) 203, 311, 425, 512, 1046
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 3 cut(s) 138, 534, 1020
TspGWI ACGGA 2 cut(s) 149, 203
TspRI CASTG 4 cut(s) 26, 289, 644, 658
Van91I CCANNNNNTGG 1 cut(s) 746
XceI RCATGY 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 5 cut(s) 39, 150, 476, 870, 1055
ZrmI AGTACT 2 cut(s) 43, 1064
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.