Rh5DG559100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002716
Physical Location & Seq
Forward (+)
86263972 .. 86264460
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG559100.1

Sequence Viewer

Length: 489 bp
ATGGACAACATTGATCGGATTTGCATATTCACAGGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACCTTCAAGTTCATAAGGGTCTACTCCAAAGCGACCAAGAGCTGTTTTCGACTAGCGGGGCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

162

Amino Acids

17.85

Weight (kDa)

4.11

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 8 - 110 3e-23 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AccI GTMKAC 1 cut(s) 259
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 294
AclWI GGATC 2 cut(s) 191, 466
AcoI YGGCCR 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 94, 245, 427
AjnI CCWGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 3 cut(s) 280, 357, 479
AluI AGCT 3 cut(s) 280, 357, 479
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 2 cut(s) 191, 466
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 206, 404
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 2 cut(s) 291, 476
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 52
BmtI GCTAGC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 166
Bsa29I ATCGAT 2 cut(s) 79, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 185
BseCI ATCGAT 2 cut(s) 79, 368
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 188
BshVI ATCGAT 2 cut(s) 79, 368
BsiHKAI GWGCWC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 13, 76, 196, 458
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 2 cut(s) 79, 368
BspFNI CGCG 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 434
BspOI GCTAGC 1 cut(s) 479
BspPI GGATC 2 cut(s) 191, 466
BsrI ACTGG 1 cut(s) 58
BssMI GATC 4 cut(s) 13, 76, 196, 458
Bst2UI CCWGG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 16, 79, 199, 461
BstMBI GATC 4 cut(s) 13, 76, 196, 458
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 454
Bsu15I ATCGAT 2 cut(s) 79, 368
BsuRI GGCC 1 cut(s) 188
BsuTUI ATCGAT 2 cut(s) 79, 368
BtsIMutI CAGTG 2 cut(s) 65, 72
Cac8I GCNNGC 1 cut(s) 477
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 56
ClaI ATCGAT 2 cut(s) 79, 368
CseI GACGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 484
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviJI RGCY 6 cut(s) 188, 280, 299, 357, 393, 479
CviKI_1 RGCY 6 cut(s) 188, 280, 299, 357, 393, 479
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 1 cut(s) 480
DpnI GATC 4 cut(s) 15, 78, 198, 460
DpnII GATC 4 cut(s) 13, 76, 196, 458
EaeI YGGCCR 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 183
FaiI YATR 8 cut(s) 26, 85, 137, 155, 157, 252, 314, 389
FauI CCCGC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 155
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 291, 476
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 56
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 319, 442
HindII GTYRAC 2 cut(s) 319, 442
HinfI GANTC 4 cut(s) 106, 365, 418, 449
HpaI GTTAAC 2 cut(s) 319, 442
Hpy166II GTNNAC 3 cut(s) 260, 319, 442
Hpy188I TCNGA 2 cut(s) 18, 339
Hpy188III TCNNGA 2 cut(s) 110, 397
Hpy8I GTNNAC 3 cut(s) 260, 319, 442
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 24, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 1 cut(s) 480
HspAI GCGC 1 cut(s) 54
KspAI GTTAAC 2 cut(s) 319, 442
Kzo9I GATC 4 cut(s) 13, 76, 196, 458
LpnPI CCDG 8 cut(s) 18, 71, 87, 123, 170, 197, 222, 387
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 2 cut(s) 291, 476
MaeIII GTNAC 1 cut(s) 149
MalI GATC 4 cut(s) 15, 78, 198, 460
MboI GATC 4 cut(s) 13, 76, 196, 458
MboII GAAGA 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 2 cut(s) 211, 404
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 5 cut(s) 122, 318, 333, 375, 441
Msp20I TGGCCA 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeI CATATG 1 cut(s) 155
NdeII GATC 4 cut(s) 13, 76, 196, 458
NheI GCTAGC 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 365, 418, 449
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PstI CTGCAG 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SaqAI TTAA 5 cut(s) 122, 318, 333, 375, 441
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 4 cut(s) 13, 76, 196, 458
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 40
SetI ASST 9 cut(s) 37, 122, 134, 146, 211, 243, 282, 359, 481
SfcI CTRYAG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 291, 476
StyD4I CCNGG 1 cut(s) 183
TaqI TCGA 6 cut(s) 79, 128, 219, 287, 368, 421
TasI AATT 1 cut(s) 190
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 3 cut(s) 365, 418, 449
Tru1I TTAA 5 cut(s) 122, 318, 333, 375, 441
Tru9I TTAA 5 cut(s) 122, 318, 333, 375, 441
TscAI CASTG 2 cut(s) 65, 79
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 239, 441
TspRI CASTG 2 cut(s) 65, 79
Van91I CCANNNNNTGG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 2 cut(s) 291, 476
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.