RLG00000036895

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002716
Physical Location & Seq
Forward (+)
86234640 .. 86236135
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036895

Sequence Viewer

Length: 810 bp
ATGAATCCGACGGCTTTGATCTCCTCCATCTCACCCCCTCGCGCCACCTTCGCCACCATGAATCCAGGGTTTGCTTCTCCACGCGGGTCCATGCTCAGACCCGGGTTCTGTAGCCTGCCGTCGACTCTGACCCGAATTCCGACCCGATCTGTAGTTGGGTTTATGGATTTCCGTGAGGAAGGTTGCGAGGAGCCGATGTCGATGTCGATTTTCTGTGAGGATATGGTGAGGCTCAGTTGGCCCCGACATTCTACAATGAAGCATGCCCCGATTAGCAGTGTCGATGGCATAGACAGCAAGAAAGCAGCCTTTCCGAATGTCAATTCAGCGAGCGGATTTGATGTTGTGGACAAGATTACAACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGGTATTCTTGCCATTGCAGCACAAGAGTCTGTTTCTTTGCTTATACCACAAATAGGCACACCAGGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCAAACCATTGCTAAAGTAGCCCTTCGAGCTTCCACCACAAACCTTGATGTACTGAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGATTTGCATATTCACAGGTGCTCACACATTTGGACGCGCTGGGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGTCTACTCCAAAGCGACCAAGTGCTGTTTTCGACCAGCGATGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

270

Amino Acids

28.75

Weight (kDa)

8.09

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 94 - 255 3.2e-37 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 2 cut(s) 122, 764
AccII CGCG 3 cut(s) 42, 84, 639
AciI CCGC 2 cut(s) 84, 333
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 1 cut(s) 558
AfiI CCNNNNNNNGG 2 cut(s) 455, 752
AgsI TTSAA 1 cut(s) 679
AjnI CCWGG 2 cut(s) 64, 463
AluBI AGCT 2 cut(s) 536, 578
AluI AGCT 2 cut(s) 536, 578
Alw21I GWGCWC 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 2 cut(s) 239, 583
ApeKI GCWGC 2 cut(s) 305, 419
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 2 cut(s) 44, 641
AspS9I GGNCC 2 cut(s) 87, 240
AsuC2I CCSGG 2 cut(s) 102, 103
AsuHPI GGTGA 2 cut(s) 24, 238
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 317, 431
BccI CCATC 3 cut(s) 35, 278, 485
BceAI ACGGC 2 cut(s) 27, 103
BciT130I CCWGG 2 cut(s) 66, 465
BcnI CCSGG 2 cut(s) 102, 103
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 3 cut(s) 109, 150, 579
BisI GCNGC 2 cut(s) 306, 420
BlsI GCNGC 2 cut(s) 307, 421
Bme1390I CCNGG 4 cut(s) 66, 102, 103, 465
Bme18I GGWCC 1 cut(s) 87
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 87, 240
BmiI GGNNCC 3 cut(s) 88, 192, 242
BmrFI CCNGG 4 cut(s) 66, 102, 103, 465
BmsI GCATC 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 2 cut(s) 102, 103
Bsa29I ATCGAT 1 cut(s) 664
BsaJI CCNNGG 3 cut(s) 65, 101, 464
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 752
Bse3DI GCAATG 2 cut(s) 414, 513
BseBI CCWGG 2 cut(s) 66, 465
BseCI ATCGAT 1 cut(s) 664
BseDI CCNNGG 3 cut(s) 65, 101, 464
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 455, 752
BseMI GCAATG 2 cut(s) 414, 513
BseMII CTCAG 3 cut(s) 109, 247, 588
BseRI GAGGAG 2 cut(s) 13, 203
BseXI GCAGC 2 cut(s) 317, 431
BseYI CCCAGC 2 cut(s) 383, 641
Bsh1236I CGCG 3 cut(s) 42, 84, 639
BshFI GGCC 2 cut(s) 241, 585
BshVI ATCGAT 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 2 cut(s) 366, 481
BslI CCNNNNNNNGG 2 cut(s) 455, 752
BsmFI GGGAC 2 cut(s) 366, 481
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 241, 585
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 4 cut(s) 18, 146, 598, 661
BspACI CCGC 2 cut(s) 84, 333
BspANI GGCC 2 cut(s) 241, 585
BspCNI CTCAG 3 cut(s) 108, 246, 587
BspDI ATCGAT 1 cut(s) 664
BspFNI CGCG 3 cut(s) 42, 84, 639
BspLI GGNNCC 3 cut(s) 88, 192, 242
BsrBI CCGCTC 1 cut(s) 333
BsrDI GCAATG 2 cut(s) 414, 513
BssECI CCNNGG 3 cut(s) 65, 101, 464
BssMI GATC 4 cut(s) 18, 146, 598, 661
Bst2UI CCWGG 2 cut(s) 66, 465
Bst4CI ACNGT 2 cut(s) 391, 472
BstC8I GCNNGC 3 cut(s) 116, 264, 331
BstDEI CTNAG 3 cut(s) 95, 233, 574
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 3 cut(s) 42, 84, 639
BstHHI GCGC 2 cut(s) 44, 641
BstKTI GATC 4 cut(s) 21, 149, 601, 664
BstMBI GATC 4 cut(s) 18, 146, 598, 661
BstMWI GCNNNNNNNGC 6 cut(s) 50, 238, 294, 419, 524, 533
BstNI CCWGG 2 cut(s) 66, 465
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 4 cut(s) 64, 100, 101, 463
BstSFI CTRYAG 3 cut(s) 109, 150, 579
BstUI CGCG 3 cut(s) 42, 84, 639
BstV1I GCAGC 2 cut(s) 317, 431
Bsu15I ATCGAT 1 cut(s) 664
BsuRI GGCC 2 cut(s) 241, 585
BsuTUI ATCGAT 1 cut(s) 664
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 283, 657
Cac8I GCNNGC 3 cut(s) 116, 264, 331
CfoI GCGC 2 cut(s) 44, 641
Cfr13I GGNCC 2 cut(s) 87, 240
Cfr9I CCCGGG 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 664
CseI GACGC 1 cut(s) 645
Csp6I GTAC 1 cut(s) 557
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 3 cut(s) 58, 91, 263
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 3 cut(s) 95, 233, 574
DpnI GATC 4 cut(s) 20, 148, 600, 663
DpnII GATC 4 cut(s) 18, 146, 598, 661
Eco147I AGGCCT 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 64, 463
FaeI CATG 3 cut(s) 61, 94, 266
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 2 cut(s) 366, 481
FatI CATG 3 cut(s) 57, 90, 262
FauI CCCGC 1 cut(s) 77
FauNDI CATATG 1 cut(s) 740
FblI GTMKAC 2 cut(s) 122, 764
Fnu4HI GCNGC 2 cut(s) 306, 420
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 306, 420
FspBI CTAG 1 cut(s) 479
GlaI GCGC 2 cut(s) 43, 640
GluI GCNGC 2 cut(s) 306, 420
GsaI CCCAGC 2 cut(s) 387, 645
HaeIII GGCC 2 cut(s) 241, 585
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 645
HhaI GCGC 2 cut(s) 44, 641
Hin1II CATG 3 cut(s) 61, 94, 266
Hin6I GCGC 2 cut(s) 42, 639
HinP1I GCGC 2 cut(s) 42, 639
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 5 cut(s) 4, 61, 124, 428, 691
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 24, 238
Hpy166II GTNNAC 3 cut(s) 123, 349, 765
Hpy188I TCNGA 6 cut(s) 9, 98, 129, 141, 315, 603
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 3 cut(s) 123, 349, 765
Hpy99I CGWCG 2 cut(s) 13, 124
HpyAV CCTTC 4 cut(s) 58, 173, 480, 539
HpyCH4III ACNGT 2 cut(s) 391, 472
HpyCH4V TGCA 3 cut(s) 365, 419, 609
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 238, 294, 419, 524, 533
HpyF3I CTNAG 3 cut(s) 95, 233, 574
Hsp92II CATG 3 cut(s) 61, 94, 266
HspAI GCGC 2 cut(s) 42, 639
Kzo9I GATC 4 cut(s) 18, 146, 598, 661
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 2 cut(s) 317, 431
LweI GCATC 1 cut(s) 791
MaeI CTAG 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 734
MalI GATC 4 cut(s) 20, 148, 600, 663
MbiI CCGCTC 1 cut(s) 333
MboI GATC 4 cut(s) 18, 146, 598, 661
MboII GAAGA 1 cut(s) 495
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 2 cut(s) 135, 322
MlyI GAGTC 3 cut(s) 118, 437, 700
MmeI TCCRAC 2 cut(s) 32, 164
MnlI CCTC 6 cut(s) 34, 48, 169, 181, 211, 222
MseI TTAA 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 4 cut(s) 66, 102, 103, 465
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 2 cut(s) 66, 465
MvnI CGCG 3 cut(s) 42, 84, 639
MwoI GCNNNNNNNGC 6 cut(s) 50, 238, 294, 419, 524, 533
NciI CCSGG 2 cut(s) 102, 103
NdeI CATATG 1 cut(s) 740
NdeII GATC 4 cut(s) 18, 146, 598, 661
NlaIII CATG 3 cut(s) 61, 94, 266
NlaIV GGNNCC 3 cut(s) 88, 192, 242
NmuCI GTSAC 1 cut(s) 734
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PceI AGGCCT 1 cut(s) 585
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 4, 61
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 2 cut(s) 307, 421
PleI GAGTC 3 cut(s) 118, 436, 699
PpsI GAGTC 3 cut(s) 118, 436, 699
Psp6I CCWGG 2 cut(s) 64, 463
PspFI CCCAGC 2 cut(s) 383, 641
PspGI CCWGG 2 cut(s) 64, 463
PspN4I GGNNCC 3 cut(s) 88, 192, 242
PspPI GGNCC 2 cut(s) 87, 240
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
SalI GTCGAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 2 cut(s) 306, 420
Sau3AI GATC 4 cut(s) 18, 146, 598, 661
Sau96I GGNCC 2 cut(s) 87, 240
SchI GAGTC 3 cut(s) 118, 437, 700
ScrFI CCNGG 4 cut(s) 66, 102, 103, 465
SduI GDGCHC 1 cut(s) 625
SetI ASST 9 cut(s) 50, 184, 538, 552, 580, 622, 707, 719, 731
SfaNI GCATC 1 cut(s) 791
SfcI CTRYAG 3 cut(s) 109, 150, 579
SinI GGWCC 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
SphI GCATGC 1 cut(s) 266
Sse9I AATT 2 cut(s) 135, 322
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 2 cut(s) 84, 333
SspMI CTAG 1 cut(s) 479
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 4 cut(s) 64, 100, 101, 463
TaaI ACNGT 2 cut(s) 391, 472
TaqI TCGA 8 cut(s) 122, 200, 206, 282, 532, 664, 713, 792
TasI AATT 2 cut(s) 135, 322
TatI WGTACW 1 cut(s) 556
TfiI GAWTC 2 cut(s) 4, 61
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 2 cut(s) 283, 664
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 2 cut(s) 305, 419
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 3 cut(s) 17, 74, 272
TspGWI ACGGA 1 cut(s) 161
TspMI CCCGGG 1 cut(s) 101
TspRI CASTG 2 cut(s) 283, 664
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 122, 764
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.