pycom03g01150

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002716
Physical Location & Seq
Reverse (-)
898191 .. 900123
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01150.1

Sequence Viewer

Length: 1053 bp
ATGCCTTCTTCTTGTAGCGCTCAATTTTGTTACAAATATATTTTTGTAATATTACTAATCTTGTGTGCAAGTGCAGGATGTGGTGCTCAGTTGACTCCTACGTTTTATGATGAATCATGCCCGAATGCCACCAGCATTGTGCGTGGAGTCATTCAAGAGGCTCTGCAGACCGATCCCCGGATTGCTGCCAGCCTCACTCGGCTTCACTTCCACGATTGCTTCGTCAATGGTTGCGATGGATCAATTCTGTTGGACAACAGCACCAGTTCTACCAGTACCATAGACAGCGAAAAAACAGCATTTCCAAATAACAACTCAGTCAGAGGATTTGATGTTGTGGACAGTATCAAGACTGCATTGGAGAATGCTTGTCCCGCCGTCGTTTCCTGTGCTGATATTCTCGCCATTGGTGCCGAAGAATCTGTTGCTTTGTCTGGAGGTCCTTCATGGACAGTGCTATTAGGAAGAAGGGATAGCACAACAGCGAATCGCACGGCTGCCAACTTAGCCATTCCAGCTCCTACTTTAACACTTGATGGACTCAAGGCCAACTTCTTAGCTGTAGGCCTCAACACCACTGATCTGGTTGCACTATCTGGTGCTCACACATTTGGGCGTGCTAGATGTCAATCTTTCACCAATCGATTGTATAACTTCAGCGGCACAGGCAGTCCTGATCCAACCTTGAACTCAACCTACTTAGAAACACTGAGTGATATATGCCCGCAGAATGGGAATAGCAGTGTGCTAACCAATTTGGATCCTGTAACGCCCGACACTTTTGATGCAAAGTATTTCTCGAATCTTCAAGTCCAGCAAGGCTTGCTCCAAAGCGATCAAGAGCTGTTTTCAACTAGCGGGGCTGATACCATCGGCATTGTTAACAACTTCAGCACTAATCAGAGCGCATTCTTTGAGAGTTTCGTGGAATCCATGATTAAAATGGGGAATATAAGCCCCTTGACCGGTACTGATGGAGAGATTCGATTGAACTGCCGTAGGGTTAATGGAGATTCATATGGATCAGCTGCTACTTTGGTAGCTGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

351

Amino Acids

37.11

Weight (kDa)

4.51

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 299 2.6e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 410
AciI CCGC 4 cut(s) 375, 660, 725, 858
AclWI GGATC 6 cut(s) 167, 247, 671, 755, 768, 1030
AcuI CTGAAG 2 cut(s) 640, 874
AdeI CACNNNGTG 1 cut(s) 713
AfaI GTAC 2 cut(s) 277, 970
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 177, 731, 965
AgeI ACCGGT 1 cut(s) 965
AgsI TTSAA 5 cut(s) 155, 688, 809, 852, 991
AluBI AGCT 5 cut(s) 518, 560, 844, 1028, 1043
AluI AGCT 5 cut(s) 518, 560, 844, 1028, 1043
Alw21I GWGCWC 2 cut(s) 88, 604
AlwI GGATC 6 cut(s) 167, 247, 671, 755, 768, 1030
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 2 cut(s) 546, 565
ApeKI GCWGC 3 cut(s) 185, 497, 1028
AsiGI ACCGGT 1 cut(s) 965
AspLEI GCGC 2 cut(s) 20, 908
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 440
BamHI GGATCC 1 cut(s) 760
BanI GGYRCC 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 88, 604
BbvI GCAGC 3 cut(s) 172, 484, 1015
BccI CCATC 4 cut(s) 230, 530, 878, 968
BceAI ACGGC 3 cut(s) 362, 510, 981
BcgI CGANNNNNNTGC 2 cut(s) 975, 1009
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 2 cut(s) 621, 855
BfmI CTRYAG 2 cut(s) 164, 561
BfoI RGCGCY 1 cut(s) 21
BisI GCNGC 4 cut(s) 186, 498, 661, 1029
BlsI GCNGC 4 cut(s) 187, 499, 662, 1030
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 412, 762
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 775
BpmI CTGGAG 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 178
Bsa29I ATCGAT 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 628
BsaJI CCNNGG 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 965
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 731, 965
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 2 cut(s) 264, 273
Bse8I GATNNNNATC 1 cut(s) 628
BseCI ATCGAT 1 cut(s) 643
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 628
BseLI CCNNNNNNNGG 3 cut(s) 177, 731, 965
BseMII CTCAG 3 cut(s) 101, 330, 701
BseNI ACTGG 2 cut(s) 264, 273
BseXI GCAGC 3 cut(s) 172, 484, 1015
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 2 cut(s) 548, 567
BshNI GGYRCC 1 cut(s) 410
BshTI ACCGGT 1 cut(s) 965
BshVI ATCGAT 1 cut(s) 643
BsiHKAI GWGCWC 2 cut(s) 88, 604
BsiSI CCGG 2 cut(s) 178, 966
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 3 cut(s) 177, 731, 965
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 3 cut(s) 130, 370, 908
BsnI GGCC 2 cut(s) 548, 567
Bsp1286I GDGCHC 2 cut(s) 88, 604
Bsp143I GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
BspACI CCGC 4 cut(s) 375, 660, 725, 858
BspANI GGCC 2 cut(s) 548, 567
BspCNI CTCAG 3 cut(s) 100, 329, 702
BspDI ATCGAT 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 412, 762
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 6 cut(s) 167, 247, 671, 755, 768, 1030
BspT107I GGYRCC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 965
BsrI ACTGG 2 cut(s) 264, 273
BssAI RCCGGY 1 cut(s) 965
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
Bst4CI ACNGT 2 cut(s) 344, 454
BstAPI GCANNNNNTGC 1 cut(s) 823
BstC8I GCNNGC 4 cut(s) 190, 618, 725, 824
BstDEI CTNAG 6 cut(s) 87, 316, 505, 556, 700, 710
BstF5I GGATG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 908
BstKTI GATC 7 cut(s) 175, 242, 583, 679, 763, 838, 1025
BstMBI GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
BstMWI GCNNNNNNNGC 6 cut(s) 374, 410, 506, 515, 666, 823
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 2 cut(s) 164, 561
BstV1I GCAGC 3 cut(s) 172, 484, 1015
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 760
Bsu15I ATCGAT 1 cut(s) 643
BsuRI GGCC 2 cut(s) 548, 567
BsuTUI ATCGAT 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 83
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 4 cut(s) 459, 576, 707, 748
Cac8I GCNNGC 4 cut(s) 190, 618, 725, 824
CfoI GCGC 2 cut(s) 20, 908
Cfr10I RCCGGY 1 cut(s) 965
Cfr13I GGNCC 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 643
Csp6I GTAC 2 cut(s) 276, 969
CspAI ACCGGT 1 cut(s) 965
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 117, 447, 934
CviQI GTAC 2 cut(s) 276, 969
DdeI CTNAG 6 cut(s) 87, 316, 505, 556, 700, 710
DpnI GATC 7 cut(s) 174, 241, 582, 678, 762, 837, 1024
DpnII GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
DraIII CACNNNGTG 1 cut(s) 713
Eco147I AGGCCT 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 440
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 640, 874
EcoO109I RGGNCCY 1 cut(s) 440
FaeI CATG 3 cut(s) 120, 450, 937
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 116, 446, 933
FauI CCCGC 3 cut(s) 382, 732, 851
FauNDI CATATG 1 cut(s) 1018
Fnu4HI GCNGC 4 cut(s) 186, 498, 661, 1029
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 4 cut(s) 186, 498, 661, 1029
FspBI CTAG 2 cut(s) 621, 855
GlaI GCGC 2 cut(s) 19, 907
GluI GCNGC 4 cut(s) 186, 498, 661, 1029
GsuI CTGGAG 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 548, 567
HapII CCGG 2 cut(s) 178, 966
HhaI GCGC 2 cut(s) 20, 908
Hin1II CATG 3 cut(s) 120, 450, 937
Hin6I GCGC 2 cut(s) 18, 906
HinP1I GCGC 2 cut(s) 18, 906
HincII GTYRAC 2 cut(s) 93, 883
HindII GTYRAC 2 cut(s) 93, 883
HpaI GTTAAC 1 cut(s) 883
HpaII CCGG 2 cut(s) 178, 966
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 3 cut(s) 93, 340, 883
Hpy188I TCNGA 2 cut(s) 323, 903
Hpy188III TCNNGA 6 cut(s) 155, 349, 435, 674, 799, 839
Hpy8I GTNNAC 3 cut(s) 93, 340, 883
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 15, 453, 462
HpyCH4III ACNGT 2 cut(s) 344, 454
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 6 cut(s) 68, 74, 166, 356, 590, 788
HpyF10VI GCNNNNNNNGC 6 cut(s) 374, 410, 506, 515, 666, 823
HpyF3I CTNAG 6 cut(s) 87, 316, 505, 556, 700, 710
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 3 cut(s) 120, 450, 937
HspAI GCGC 2 cut(s) 18, 906
KspAI GTTAAC 1 cut(s) 883
Kzo9I GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
LmnI GCTCC 2 cut(s) 523, 831
Lsp1109I GCAGC 3 cut(s) 172, 484, 1015
LweI GCATC 1 cut(s) 775
MaeI CTAG 2 cut(s) 621, 855
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 29, 766
MalI GATC 7 cut(s) 174, 241, 582, 678, 762, 837, 1024
MboI GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
MboII GAAGA 3 cut(s) 428, 477, 797
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 2 cut(s) 88, 604
MluCI AATT 3 cut(s) 23, 243, 754
MlyI GAGTC 3 cut(s) 88, 156, 534
MmeI TCCRAC 2 cut(s) 231, 704
MnlI CCTC 5 cut(s) 151, 203, 317, 431, 578
MseI TTAA 5 cut(s) 527, 882, 939, 1005, 1051
MspA1I CMGCKG 2 cut(s) 660, 1028
MspI CCGG 2 cut(s) 178, 966
MspR9I CCNGG 1 cut(s) 178
Mva1269I GAATGC 3 cut(s) 130, 370, 908
MwoI GCNNNNNNNGC 6 cut(s) 374, 410, 506, 515, 666, 823
NciI CCSGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 1018
NdeII GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
NlaIII CATG 3 cut(s) 120, 450, 937
NlaIV GGNNCC 2 cut(s) 412, 762
NmeAIII GCCGAG 1 cut(s) 178
PceI AGGCCT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 3 cut(s) 130, 370, 908
PfeI GAWTC 7 cut(s) 113, 419, 487, 802, 929, 982, 1013
PinAI ACCGGT 1 cut(s) 965
PkrI GCNGC 4 cut(s) 187, 499, 662, 1030
PleI GAGTC 3 cut(s) 88, 155, 534
PpsI GAGTC 3 cut(s) 88, 155, 534
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 412, 762
PspPI GGNCC 1 cut(s) 440
PspPPI RGGWCCY 1 cut(s) 440
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PstI CTGCAG 1 cut(s) 168
PsuI RGATCY 1 cut(s) 760
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 2 cut(s) 277, 970
RsaNI GTAC 2 cut(s) 276, 969
SaqAI TTAA 5 cut(s) 527, 882, 939, 1005, 1051
SatI GCNGC 4 cut(s) 186, 498, 661, 1029
Sau3AI GATC 7 cut(s) 172, 239, 580, 676, 760, 835, 1022
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 3 cut(s) 88, 156, 534
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 2 cut(s) 88, 604
SetI ASST 9 cut(s) 104, 442, 520, 562, 686, 698, 846, 1030, 1045
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 2 cut(s) 164, 561
SinI GGWCC 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 3 cut(s) 23, 243, 754
SseBI AGGCCT 1 cut(s) 567
SsiI CCGC 4 cut(s) 375, 660, 725, 858
SspI AATATT 2 cut(s) 51, 1049
SspMI CTAG 2 cut(s) 621, 855
StuI AGGCCT 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 344, 454
TaiI ACGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 643, 800, 985
TaqII GACCGA 1 cut(s) 185
TasI AATT 3 cut(s) 23, 243, 754
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 7 cut(s) 113, 419, 487, 802, 929, 982, 1013
Tru1I TTAA 5 cut(s) 527, 882, 939, 1005, 1051
Tru9I TTAA 5 cut(s) 527, 882, 939, 1005, 1051
TscAI CASTG 4 cut(s) 459, 583, 714, 748
TseI GCWGC 3 cut(s) 185, 497, 1028
TspDTI ATGAA 3 cut(s) 126, 435, 1005
TspRI CASTG 4 cut(s) 459, 583, 714, 748
VpaK11BI GGWCC 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XspI CTAG 2 cut(s) 621, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.