RLG00000036893

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002716
Physical Location & Seq
Forward (+)
86199673 .. 86201190
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036893

Sequence Viewer

Length: 897 bp
ATGTCGATCACTAGCATTGTCCGTGGAGTCATTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTTACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAATAGTAGCAGTGTTGATGGCATAGACACGAGAGGATTTGATGTAGTGGACAAGATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGGTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCATCATGGACAGTCCTACTAGGAAGAAGGGATAGAACAACAGCAGACCGAACCGATGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGCACTATCCGGTGCTCACACATTTGGATGCTCCCAATGTCAGTTTTTCACTGATCGATTATACAACTTTAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACGTAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTTGACAGCAACTATTTCTCTAATCTTCAAGTTCATAAAGGTCTACACCAAAGCTACCAAGAGCTGTTTTCGACTAGCGGGGCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTTATGGAGAGATTCCATTGAACTGCTGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

299

Amino Acids

32.0

Weight (kDa)

4.32

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 246 7.8e-75 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 667
AciI CCGC 1 cut(s) 702
AclWI GGATC 4 cut(s) 47, 60, 599, 874
AcoI YGGCCR 1 cut(s) 594
AcuI CTGAAG 1 cut(s) 718
AfaI GTAC 2 cut(s) 384, 893
AfiI CCNNNNNNNGG 2 cut(s) 224, 575
AgsI TTSAA 3 cut(s) 372, 653, 835
AjnI CCWGG 1 cut(s) 591
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AluBI AGCT 7 cut(s) 41, 362, 404, 678, 688, 765, 887
AluI AGCT 7 cut(s) 41, 362, 404, 678, 688, 765, 887
Alw21I GWGCWC 1 cut(s) 448
AlwI GGATC 4 cut(s) 47, 60, 599, 874
AoxI GGCC 3 cut(s) 283, 409, 594
ApeKI GCWGC 3 cut(s) 65, 254, 875
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 883
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 3 cut(s) 52, 266, 862
BccI CCATC 3 cut(s) 146, 295, 614
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 1 cut(s) 593
BfaI CTAG 4 cut(s) 12, 305, 699, 884
BfmI CTRYAG 2 cut(s) 405, 841
BisI GCNGC 3 cut(s) 66, 255, 876
BlsI GCNGC 3 cut(s) 67, 256, 877
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 4 cut(s) 106, 128, 331, 449
BmtI GCTAGC 1 cut(s) 887
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 371, 574
Bsa29I ATCGAT 2 cut(s) 487, 776
BsaAI YACGTR 2 cut(s) 59, 544
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 575
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 593
BseCI ATCGAT 2 cut(s) 487, 776
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 2 cut(s) 224, 575
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 414, 879
BseXI GCAGC 3 cut(s) 52, 266, 862
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 3 cut(s) 285, 411, 596
BshVI ATCGAT 2 cut(s) 487, 776
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 224, 575
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 3 cut(s) 285, 411, 596
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 6 cut(s) 6, 52, 424, 484, 604, 866
BspACI CCGC 1 cut(s) 702
BspANI GGCC 3 cut(s) 285, 411, 596
BspCNI CTCAG 2 cut(s) 413, 880
BspDI ATCGAT 2 cut(s) 487, 776
BspLI GGNNCC 1 cut(s) 54
BspOI GCTAGC 1 cut(s) 887
BspPI GGATC 4 cut(s) 47, 60, 599, 874
BsrDI GCAATG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 6 cut(s) 6, 52, 424, 484, 604, 866
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 255
BstBAI YACGTR 2 cut(s) 59, 544
BstC8I GCNNGC 2 cut(s) 70, 885
BstDEI CTNAG 2 cut(s) 400, 888
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 464
BstKTI GATC 6 cut(s) 9, 55, 427, 487, 607, 869
BstMBI GATC 6 cut(s) 6, 52, 424, 484, 604, 866
BstMWI GCNNNNNNNGC 4 cut(s) 254, 350, 359, 884
BstNI CCWGG 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 2 cut(s) 405, 841
BstSNI TACGTA 1 cut(s) 544
BstV1I GCAGC 3 cut(s) 52, 266, 862
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 487, 776
BsuRI GGCC 3 cut(s) 285, 411, 596
BsuTUI ATCGAT 2 cut(s) 487, 776
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 480
Cac8I GCNNGC 2 cut(s) 70, 885
Cfr13I GGNCC 1 cut(s) 284
ClaI ATCGAT 2 cut(s) 487, 776
Csp6I GTAC 2 cut(s) 383, 892
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 2 cut(s) 92, 291
CviQI GTAC 2 cut(s) 383, 892
DdeI CTNAG 2 cut(s) 400, 888
DpnI GATC 6 cut(s) 8, 54, 426, 486, 606, 868
DpnII GATC 6 cut(s) 6, 52, 424, 484, 604, 866
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco105I TACGTA 1 cut(s) 544
Eco147I AGGCCT 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 591
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 2 cut(s) 95, 294
FaqI GGGAC 1 cut(s) 201
FatI CATG 2 cut(s) 91, 290
FauI CCCGC 1 cut(s) 695
FauNDI CATATG 1 cut(s) 563
FblI GTMKAC 1 cut(s) 667
Fnu4HI GCNGC 3 cut(s) 66, 255, 876
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 66, 255, 876
FspBI CTAG 4 cut(s) 12, 305, 699, 884
GluI GCNGC 3 cut(s) 66, 255, 876
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 3 cut(s) 285, 411, 596
HapII CCGG 1 cut(s) 441
Hin1II CATG 2 cut(s) 95, 294
HincII GTYRAC 2 cut(s) 727, 850
HindII GTYRAC 2 cut(s) 727, 850
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 6 cut(s) 27, 263, 514, 773, 826, 857
HpaI GTTAAC 2 cut(s) 727, 850
HpaII CCGG 1 cut(s) 441
Hpy166II GTNNAC 4 cut(s) 184, 668, 727, 850
Hpy188I TCNGA 1 cut(s) 747
Hpy188III TCNNGA 4 cut(s) 35, 279, 518, 805
Hpy8I GTNNAC 4 cut(s) 184, 668, 727, 850
HpyAV CCTTC 2 cut(s) 306, 365
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 58, 543
HpyCH4V TGCA 6 cut(s) 46, 68, 119, 200, 254, 434
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 350, 359, 884
HpyF3I CTNAG 2 cut(s) 400, 888
HpySE526I ACGT 2 cut(s) 58, 543
Hsp92II CATG 2 cut(s) 95, 294
KspAI GTTAAC 2 cut(s) 727, 850
Kzo9I GATC 6 cut(s) 6, 52, 424, 484, 604, 866
LmnI GCTCC 2 cut(s) 367, 467
Lsp1109I GCAGC 3 cut(s) 52, 266, 862
LweI GCATC 4 cut(s) 106, 128, 331, 449
MaeI CTAG 4 cut(s) 12, 305, 699, 884
MaeII ACGT 2 cut(s) 58, 543
MaeIII GTNAC 1 cut(s) 557
MalI GATC 6 cut(s) 8, 54, 426, 486, 606, 868
MboI GATC 6 cut(s) 6, 52, 424, 484, 604, 866
MboII GAAGA 4 cut(s) 272, 321, 641, 866
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 2 cut(s) 123, 598
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 3 cut(s) 36, 272, 523
MnlI CCTC 5 cut(s) 83, 161, 275, 619, 812
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 596
MseI TTAA 7 cut(s) 192, 501, 530, 726, 741, 783, 849
MslI CAYNNNNRTG 1 cut(s) 457
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 4 cut(s) 254, 350, 359, 884
NdeI CATATG 1 cut(s) 563
NdeII GATC 6 cut(s) 6, 52, 424, 484, 604, 866
NheI GCTAGC 1 cut(s) 883
NlaIII CATG 2 cut(s) 95, 294
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 121
PceI AGGCCT 1 cut(s) 411
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 773, 826, 857
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 3 cut(s) 67, 256, 877
PleI GAGTC 3 cut(s) 35, 271, 522
PpsI GAGTC 3 cut(s) 35, 271, 522
Ppu21I YACGTR 2 cut(s) 59, 544
Psp6I CCWGG 1 cut(s) 591
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 384, 893
RsaNI GTAC 2 cut(s) 383, 892
RseI CAYNNNNRTG 1 cut(s) 457
SaqAI TTAA 7 cut(s) 192, 501, 530, 726, 741, 783, 849
SatI GCNGC 3 cut(s) 66, 255, 876
Sau3AI GATC 6 cut(s) 6, 52, 424, 484, 604, 866
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 3 cut(s) 36, 272, 523
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 4 cut(s) 106, 128, 331, 449
SfcI CTRYAG 2 cut(s) 405, 841
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 2 cut(s) 386, 553
SmoI CTYRAG 2 cut(s) 386, 553
SnaBI TACGTA 1 cut(s) 544
Sse9I AATT 2 cut(s) 123, 598
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 1 cut(s) 702
SspMI CTAG 4 cut(s) 12, 305, 699, 884
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 61, 546
TaqI TCGA 5 cut(s) 5, 487, 536, 695, 776
TaqII GACCGA 1 cut(s) 348
TasI AATT 2 cut(s) 123, 598
TatI WGTACW 2 cut(s) 382, 891
TfiI GAWTC 3 cut(s) 773, 826, 857
Tru1I TTAA 7 cut(s) 192, 501, 530, 726, 741, 783, 849
Tru9I TTAA 7 cut(s) 192, 501, 530, 726, 741, 783, 849
TscAI CASTG 2 cut(s) 151, 487
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 3 cut(s) 65, 254, 875
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 3 cut(s) 363, 647, 849
TspGWI ACGGA 2 cut(s) 11, 65
TspRI CASTG 2 cut(s) 151, 487
Van91I CCANNNNNTGG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 4 cut(s) 12, 305, 699, 884
ZrmI AGTACT 1 cut(s) 893
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.