RLG00000036898

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002716
Physical Location & Seq
Forward (+)
86312308 .. 86313729
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036898

Sequence Viewer

Length: 1041 bp
ATGGCAACTACTAGCACTGCAGTTTTCTTTGCATTGTTGATCTTATTGTGTGCAGGAGGATATGGTGAGGCTCAGCTGACCCCGACATTCTACAATGAAGCATGCCCCGATGTGAATGTCACTAGCATTGTCCGTGGAGTCATTCAGGAGGCATTGCAGACGGATCCCCGTATCGCTGCAAGTCTTATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAACAGTAGCAGTGTCGATGGCATAGACAGCGAGAAAGCAGCCTTTCCGAATGTCAATTCAGCAAGAGGATTTGATGTTGTGGACAAGATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACGCCACCGATCTGGTTGCACTATCCGGTGCTCACACATTTGGACACGCCCAGTGTCAGTTTTTCATTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACCTTCAAGTTCATAAGGGTCTACTCCAAAGCGATCAAGAGCTGTTTTCGACTAGCGGGGCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAACCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

347

Amino Acids

36.76

Weight (kDa)

4.32

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 294 4.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 719
AccI GTMKAC 1 cut(s) 811
AciI CCGC 2 cut(s) 483, 846
AclWI GGATC 4 cut(s) 158, 171, 743, 1018
AcoI YGGCCR 1 cut(s) 738
AcuI CTGAAG 1 cut(s) 862
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 4 cut(s) 516, 646, 797, 979
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AluBI AGCT 6 cut(s) 76, 506, 548, 832, 909, 1031
AluI AGCT 6 cut(s) 76, 506, 548, 832, 909, 1031
Alw21I GWGCWC 1 cut(s) 592
AlwI GGATC 4 cut(s) 158, 171, 743, 1018
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 3 cut(s) 427, 553, 738
ApeKI GCWGC 5 cut(s) 176, 284, 398, 485, 1019
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 77
AsuNHI GCTAGC 1 cut(s) 1027
BalI TGGCCA 1 cut(s) 740
BamHI GGATCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 592
BbvI GCAGC 5 cut(s) 163, 296, 410, 472, 1006
BccI CCATC 4 cut(s) 257, 455, 758, 956
BcgI CGANNNNNNTGC 4 cut(s) 557, 591, 963, 997
BciT130I CCWGG 1 cut(s) 737
BfaI CTAG 5 cut(s) 12, 123, 449, 843, 1028
BfmI CTRYAG 3 cut(s) 18, 549, 982
BisI GCNGC 5 cut(s) 177, 285, 399, 486, 1020
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 5 cut(s) 178, 286, 400, 487, 1021
Bme1390I CCNGG 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 165, 430
BmrFI CCNGG 1 cut(s) 737
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 2 cut(s) 217, 239
BmtI GCTAGC 1 cut(s) 1031
BmuI ACTGGG 1 cut(s) 604
BpmI CTGGAG 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 515, 718
Bsa29I ATCGAT 2 cut(s) 631, 920
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 610
Bse3DI GCAATG 2 cut(s) 152, 393
BseBI CCWGG 1 cut(s) 737
BseCI ATCGAT 2 cut(s) 631, 920
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 2 cut(s) 152, 393
BseMII CTCAG 3 cut(s) 86, 558, 1023
BseNI ACTGG 1 cut(s) 610
BseXI GCAGC 5 cut(s) 163, 296, 410, 472, 1006
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 3 cut(s) 429, 555, 740
BshVI ATCGAT 2 cut(s) 631, 920
BsiHKAI GWGCWC 1 cut(s) 592
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 3 cut(s) 429, 555, 740
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 2 cut(s) 483, 846
BspANI GGCC 3 cut(s) 429, 555, 740
BspCNI CTCAG 3 cut(s) 85, 557, 1024
BspDI ATCGAT 2 cut(s) 631, 920
BspLI GGNNCC 2 cut(s) 165, 430
BspMAI CTGCAG 2 cut(s) 22, 986
BspOI GCTAGC 1 cut(s) 1031
BspPI GGATC 4 cut(s) 158, 171, 743, 1018
BsrDI GCAATG 2 cut(s) 152, 393
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 3 cut(s) 251, 370, 442
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 2 cut(s) 103, 1029
BstDEI CTNAG 3 cut(s) 72, 544, 1032
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 7 cut(s) 42, 166, 571, 631, 751, 826, 1013
BstMBI GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
BstMWI GCNNNNNNNGC 5 cut(s) 273, 398, 494, 503, 1028
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 3 cut(s) 18, 549, 982
BstV1I GCAGC 5 cut(s) 163, 296, 410, 472, 1006
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 2 cut(s) 631, 920
BsuRI GGCC 3 cut(s) 429, 555, 740
BsuTUI ATCGAT 2 cut(s) 631, 920
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 15, 262
BtsIMutI CAGTG 3 cut(s) 15, 262, 617
Cac8I GCNNGC 2 cut(s) 103, 1029
CaiI CAGNNNCTG 1 cut(s) 959
Cfr13I GGNCC 1 cut(s) 428
ClaI ATCGAT 2 cut(s) 631, 920
Csp6I GTAC 1 cut(s) 527
CspCI CAANNNNNGTGG 2 cut(s) 883, 918
CviAII CATG 3 cut(s) 102, 203, 435
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 3 cut(s) 72, 544, 1032
DpnI GATC 7 cut(s) 41, 165, 570, 630, 750, 825, 1012
DpnII GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 862
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 3 cut(s) 105, 206, 438
FaqI GGGAC 1 cut(s) 345
FatI CATG 3 cut(s) 101, 202, 434
FauI CCCGC 1 cut(s) 839
FauNDI CATATG 1 cut(s) 707
FblI GTMKAC 1 cut(s) 811
Fnu4HI GCNGC 5 cut(s) 177, 285, 399, 486, 1020
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 5 cut(s) 177, 285, 399, 486, 1020
FspBI CTAG 5 cut(s) 12, 123, 449, 843, 1028
GluI GCNGC 5 cut(s) 177, 285, 399, 486, 1020
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 429, 555, 740
HapII CCGG 1 cut(s) 585
Hin1II CATG 3 cut(s) 105, 206, 438
HincII GTYRAC 2 cut(s) 871, 994
HindII GTYRAC 2 cut(s) 871, 994
HinfI GANTC 6 cut(s) 138, 407, 658, 917, 970, 1001
HpaI GTTAAC 2 cut(s) 871, 994
HpaII CCGG 1 cut(s) 585
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 4 cut(s) 328, 812, 871, 994
Hpy188I TCNGA 2 cut(s) 294, 891
Hpy188III TCNNGA 5 cut(s) 146, 423, 662, 827, 949
Hpy8I GTNNAC 4 cut(s) 328, 812, 871, 994
HpyAV CCTTC 3 cut(s) 450, 509, 803
HpyCH4III ACNGT 3 cut(s) 251, 370, 442
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 398, 494, 503, 1028
HpyF3I CTNAG 3 cut(s) 72, 544, 1032
Hsp92II CATG 3 cut(s) 105, 206, 438
KspAI GTTAAC 2 cut(s) 871, 994
Kzo9I GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 5 cut(s) 163, 296, 410, 472, 1006
LweI GCATC 2 cut(s) 217, 239
MaeI CTAG 5 cut(s) 12, 123, 449, 843, 1028
MaeIII GTNAC 2 cut(s) 118, 701
MalI GATC 7 cut(s) 41, 165, 570, 630, 750, 825, 1012
MboI GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
MboII GAAGA 3 cut(s) 416, 465, 1010
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 3 cut(s) 234, 301, 742
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 3 cut(s) 147, 416, 667
MnlI CCTC 8 cut(s) 50, 61, 142, 305, 419, 442, 763, 956
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 740
MseI TTAA 6 cut(s) 336, 674, 870, 885, 927, 993
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 3 cut(s) 76, 485, 548
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 5 cut(s) 273, 398, 494, 503, 1028
NdeI CATATG 1 cut(s) 707
NdeII GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
NheI GCTAGC 1 cut(s) 1027
NlaIII CATG 3 cut(s) 105, 206, 438
NlaIV GGNNCC 2 cut(s) 165, 430
NmuCI GTSAC 2 cut(s) 118, 701
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 105
PaeI GCATGC 1 cut(s) 105
PceI AGGCCT 1 cut(s) 555
PctI GAATGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 3 cut(s) 917, 970, 1001
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 5 cut(s) 178, 286, 400, 487, 1021
PleI GAGTC 3 cut(s) 146, 415, 666
PpsI GAGTC 3 cut(s) 146, 415, 666
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 165, 430
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 2 cut(s) 22, 986
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 2 cut(s) 76, 548
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 6 cut(s) 336, 674, 870, 885, 927, 993
SatI GCNGC 5 cut(s) 177, 285, 399, 486, 1020
Sau3AI GATC 7 cut(s) 39, 163, 568, 628, 748, 823, 1010
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 3 cut(s) 147, 416, 667
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 2 cut(s) 217, 239
SfcI CTRYAG 3 cut(s) 18, 549, 982
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 530, 697
SmoI CTYRAG 2 cut(s) 530, 697
SphI GCATGC 1 cut(s) 105
Sse9I AATT 3 cut(s) 234, 301, 742
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 2 cut(s) 483, 846
SspMI CTAG 5 cut(s) 12, 123, 449, 843, 1028
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 251, 370, 442
TaqI TCGA 7 cut(s) 261, 631, 680, 771, 839, 920, 973
TasI AATT 3 cut(s) 234, 301, 742
TatI WGTACW 1 cut(s) 526
TfiI GAWTC 3 cut(s) 917, 970, 1001
Tru1I TTAA 6 cut(s) 336, 674, 870, 885, 927, 993
Tru9I TTAA 6 cut(s) 336, 674, 870, 885, 927, 993
TscAI CASTG 3 cut(s) 22, 262, 617
TseFI GTSAC 2 cut(s) 118, 701
TseI GCWGC 5 cut(s) 176, 284, 398, 485, 1019
Tsp45I GTSAC 2 cut(s) 118, 701
TspDTI ATGAA 5 cut(s) 111, 507, 613, 791, 993
TspGWI ACGGA 2 cut(s) 122, 176
TspRI CASTG 3 cut(s) 22, 262, 617
Van91I CCANNNNNTGG 1 cut(s) 719
XceI RCATGY 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 5 cut(s) 12, 123, 449, 843, 1028
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.