Rh5BG548700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002716
Physical Location & Seq
Forward (+)
87181275 .. 87202646
21372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG548700.1

Sequence Viewer

Length: 948 bp
ATGGCACCAAAGAATAGAGCAGCAGCTGCTAAAGCTATCGCCTTAAGAATGAAAGCTGTGCAAATGAAGAGGGCTAAACCTAAGGATATAGAGCCGACAACTTCACCATTGAAAACGTTTGTGTCTAAAAAGAAGTCTGCATCTCCAAATAAGAAGGATGTGTCCCAAAAGAAGAGGACTTTGTCGCCAAAGAATAAGGCTGGATCCCCAAAGAAGAGGACTGTGTCGCCAACGAAGAAGGCTGCATTCCAAAAGAAGAACGGCGCATCCTGTTCTAGTGCTCGATCTATGAAGGATGTGTCAAGCAGTAAATCTGGAAACAATTTTATGTCCACTAAGATAGCACAGAGAGCAGCAGCTTGTAATGTGGAAGATATCAACGTAACAGGAGGATATGGTGAGGCTCAGCTGACCCCGACGTTCTACAATGAAGCATGCCCCGATGTGAATGTCACTAGCATTGTCCGTGGAGTCATTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAACAGTAGCAGTGTCGATGGAATAGACAGCGAGAAAGCAGCCTTTCCGAATGTTAATTCAGCGAGAGGATTTGATGTTGTGGACAAGATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAAGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGTACTCAAATATAAATGTTACATAGTACGTTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

315

Amino Acids

33.49

Weight (kDa)

9.7

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 155 - 305 3e-53 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 816
AclI AACGTT 1 cut(s) 116
AclWI GGATC 4 cut(s) 198, 211, 491, 504
AfaI GTAC 3 cut(s) 861, 912, 936
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 112, 849
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 8 cut(s) 26, 35, 56, 359, 409, 485, 839, 881
AluI AGCT 8 cut(s) 26, 35, 56, 359, 409, 485, 839, 881
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 4 cut(s) 198, 211, 491, 504
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 2 cut(s) 760, 886
Asp700I GAANNNNTTC 1 cut(s) 831
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 96, 410
AxyI CCTNAGG 1 cut(s) 81
BamHI GGATCC 2 cut(s) 203, 496
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 283
BccI CCATC 2 cut(s) 590, 788
BceAI ACGGC 1 cut(s) 277
BfaI CTAG 3 cut(s) 276, 456, 782
BfmI CTRYAG 1 cut(s) 882
BfrI CTTAAG 1 cut(s) 43
BlpI GCTNAGC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 4 cut(s) 6, 205, 498, 763
BmsI GCATC 4 cut(s) 149, 275, 550, 572
BpmI CTGGAG 1 cut(s) 777
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 848
BsaAI YACGTR 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 466
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 4 cut(s) 163, 266, 301, 799
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 419, 891
BseYI CCCAGC 1 cut(s) 695
BshFI GGCC 2 cut(s) 762, 888
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 283
BslFI GGGAC 2 cut(s) 148, 678
BsmFI GGGAC 2 cut(s) 148, 678
BsmI GAATGC 2 cut(s) 245, 691
BsnI GGCC 2 cut(s) 762, 888
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 203, 284, 496, 901
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 1 cut(s) 816
BspANI GGCC 2 cut(s) 762, 888
BspCNI CTCAG 2 cut(s) 418, 890
BspLI GGNNCC 4 cut(s) 6, 205, 498, 763
BspPI GGATC 4 cut(s) 198, 211, 491, 504
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 4 cut(s) 203, 284, 496, 901
Bst4CI ACNGT 4 cut(s) 223, 584, 703, 775
Bst6I CTCTTC 4 cut(s) 62, 167, 209, 732
BstAFI CTTAAG 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 436, 514
BstDEI CTNAG 4 cut(s) 81, 336, 405, 877
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 4 cut(s) 163, 266, 301, 799
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 4 cut(s) 206, 287, 499, 904
BstMBI GATC 4 cut(s) 203, 284, 496, 901
BstMWI GCNNNNNNNGC 6 cut(s) 26, 32, 350, 731, 827, 836
BstNSI RCATGY 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 882
BstX2I RGATCY 2 cut(s) 203, 496
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 203, 496
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 762, 888
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 4 cut(s) 163, 266, 301, 799
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 436, 514
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 761
Csp6I GTAC 3 cut(s) 860, 911, 935
CviAII CATG 3 cut(s) 435, 536, 768
CviQI GTAC 3 cut(s) 860, 911, 935
DdeI CTNAG 4 cut(s) 81, 336, 405, 877
DpnI GATC 4 cut(s) 205, 286, 498, 903
DpnII GATC 4 cut(s) 203, 284, 496, 901
Eam1104I CTCTTC 4 cut(s) 62, 167, 209, 732
EarI CTCTTC 4 cut(s) 62, 167, 209, 732
Eco147I AGGCCT 1 cut(s) 888
Eco32I GATATC 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 761
EcoRV GATATC 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 565
FaeI CATG 3 cut(s) 438, 539, 771
FaiI YATR 9 cut(s) 89, 290, 329, 396, 436, 537, 769, 921, 932
FaqI GGGAC 2 cut(s) 148, 678
FatI CATG 3 cut(s) 434, 535, 767
FokI GGATG 4 cut(s) 170, 253, 308, 806
FspBI CTAG 3 cut(s) 276, 456, 782
GlaI GCGC 1 cut(s) 265
GsaI CCCAGC 1 cut(s) 699
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 2 cut(s) 762, 888
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 438, 539, 771
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 2 cut(s) 471, 740
HphI GGTGA 2 cut(s) 96, 410
Hpy166II GTNNAC 2 cut(s) 333, 661
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 3 cut(s) 315, 479, 756
Hpy8I GTNNAC 2 cut(s) 333, 661
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 4 cut(s) 148, 232, 286, 842
HpyCH4III ACNGT 4 cut(s) 223, 584, 703, 775
HpyCH4IV ACGT 5 cut(s) 116, 381, 419, 502, 937
HpyCH4V TGCA 8 cut(s) 61, 140, 245, 490, 512, 563, 677, 731
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 32, 350, 731, 827, 836
HpyF3I CTNAG 4 cut(s) 81, 336, 405, 877
HpySE526I ACGT 5 cut(s) 116, 381, 419, 502, 937
Hsp92II CATG 3 cut(s) 438, 539, 771
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 203, 284, 496, 901
LmnI GCTCC 1 cut(s) 844
LweI GCATC 4 cut(s) 149, 275, 550, 572
MaeI CTAG 3 cut(s) 276, 456, 782
MaeII ACGT 5 cut(s) 116, 381, 419, 502, 937
MaeIII GTNAC 3 cut(s) 382, 451, 926
MalI GATC 4 cut(s) 205, 286, 498, 903
MboI GATC 4 cut(s) 203, 284, 496, 901
MboII GAAGA 8 cut(s) 79, 184, 226, 247, 268, 383, 749, 798
MflI RGATCY 2 cut(s) 203, 496
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 3 cut(s) 322, 567, 634
MlyI GAGTC 2 cut(s) 480, 749
MnlI CCTC 9 cut(s) 63, 168, 210, 383, 394, 527, 638, 752, 775
Mph1103I ATGCAT 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 3 cut(s) 44, 633, 669
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 4 cut(s) 26, 409, 818, 881
MspCI CTTAAG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 245, 691
MwoI GCNNNNNNNGC 6 cut(s) 26, 32, 350, 731, 827, 836
NdeII GATC 4 cut(s) 203, 284, 496, 901
NlaIII CATG 3 cut(s) 438, 539, 771
NlaIV GGNNCC 4 cut(s) 6, 205, 498, 763
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 438
PaeI GCATGC 1 cut(s) 438
PceI AGGCCT 1 cut(s) 888
PctI GAATGC 2 cut(s) 245, 691
PdmI GAANNNNTTC 1 cut(s) 831
PflFI GACNNNGTC 2 cut(s) 181, 223
PleI GAGTC 2 cut(s) 479, 748
PpsI GAGTC 2 cut(s) 479, 748
Ppu21I YACGTR 1 cut(s) 503
Psp1406I AACGTT 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 695
PspN4I GGNNCC 4 cut(s) 6, 205, 498, 763
PspPI GGNCC 1 cut(s) 761
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 2 cut(s) 203, 496
PsyI GACNNNGTC 2 cut(s) 181, 223
PvuII CAGCTG 3 cut(s) 26, 409, 881
RsaI GTAC 3 cut(s) 861, 912, 936
RsaNI GTAC 3 cut(s) 860, 911, 935
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 3 cut(s) 44, 633, 669
Sau3AI GATC 4 cut(s) 203, 284, 496, 901
Sau96I GGNCC 1 cut(s) 761
SchI GAGTC 2 cut(s) 480, 749
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 4 cut(s) 149, 275, 550, 572
SfcI CTRYAG 1 cut(s) 882
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 43, 863
SmoI CTYRAG 2 cut(s) 43, 863
SphI GCATGC 1 cut(s) 438
Sse9I AATT 3 cut(s) 322, 567, 634
SseBI AGGCCT 1 cut(s) 888
SsiI CCGC 1 cut(s) 816
SspMI CTAG 3 cut(s) 276, 456, 782
StuI AGGCCT 1 cut(s) 888
TaaI ACNGT 4 cut(s) 223, 584, 703, 775
TaiI ACGT 5 cut(s) 119, 384, 422, 505, 940
TaqI TCGA 2 cut(s) 283, 594
TasI AATT 3 cut(s) 322, 567, 634
TatI WGTACW 2 cut(s) 859, 910
Tru1I TTAA 3 cut(s) 44, 633, 669
Tru9I TTAA 3 cut(s) 44, 633, 669
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 5 cut(s) 65, 80, 305, 444, 840
TspGWI ACGGA 2 cut(s) 455, 509
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 2 cut(s) 181, 223
Vha464I CTTAAG 1 cut(s) 43
XceI RCATGY 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 3 cut(s) 276, 456, 782
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.