Rorug05G0472200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002716
Physical Location & Seq
Forward (+)
64872180 .. 64875158
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0472200.1

Sequence Viewer

Length: 2190 bp
ATGGATCCACGTTTCTCTGAATTTCCCAATTTCAATGATCAAACCCTTTTGCCCGATATGTTGAATGAGTACCCAAGTAGTGACCCTTTTGAAGATCTTAGCTTTTCGGACCCAAACCCCAGTAACTCTGCTCTGTCGTCGAGCTTTAGCCCCGATGGAGATGATGTTGAGTTTTCTGATAGTTTGCTCAAGTACATAAACCAGGTGCTTATGGAGGAGGACATGGAGTCAAAGCCATGTATGTTCCATGACCCTTTGGCTATTCAAGCCACTGAGGAGTCTCTTTATGAGGTTATTGGGGGAGGGAAGTACCCAACTTCCCAAGACCAGAACCCTCTTTGTGTTGATCAAAATGTTCAGAGCCCAGATGGCGGTTATTTTTCTGGAAGTTCCAGTGATTCTAGCTCTAGTCCTGGTCCTTCCGTTGACTCTTGCCCGGTCACTGCTCAGTTTGTAGAGACTAGGAGCTCTATATTGCAAAACCCTATTCCTGAAAACTTTGTTTTCCAGTCCCCTTCCAGGGCTAGGTCTCAATCGTCGTCGGATGGGTATGGAAATGGGAATGGGATGGTGGGTTCTTATAGGAGTGAGCTAATGGTTCCTGATGTGCTTAGTAAGAATGAATTGTTAGTGCAGTTTAACCTAGGGGCAGAGGAGGGTAGTAAGTTTCTTCCTAGAGGTCAATTGATTAGTGCGGAGGGCAACAAGATGTATGCTGTGGTGAATAAAAAGGCTGGAGATGCGGTAGTAACAACGCAGAAGAATGGGAGTGAGCAATTTCATGTTGGTTCAAGAGGAAAAAAGAATCATCAAAGGGAAGATATAGATCTGGAGGATGGGAGGAGTAACAAGCAACCAGCAGTTTATATGGACGATGAGGAGGGTGAGCTGTCTGATATTTTTGACAAGGTGTTGCTCTGTAAGCCTTTGGAGGGTAAAGACGATGAAGCCAGTCAGAATGGAGCAAACAATGGCCTGCAGCAGGATGTGCAATCTGTTGGAATTGGTAATGGGAAGGGTCGCCGCAAGATTCATGGCAACAAGAAGGAAGTGATAGATTTGAGGGCTCTTCTGATTTTATGTGCACAAGCTGTTTCTGTTGATGATCACGAGACTGCTAGTGAGCTACTAAAGCAGATTATGCAGCACTCTTCCCCATTTGGTGATTGTGCTCAGAGGTTGGCTCATTGCTTTGCAAATGCTCTTGAAGCGCGGTTAGCTGGCACTGGAACTCAAATATATACTGCTTTATCTGCTAAACGAATGTCAGCTGCGGATATGCTGAAGTTTTACCAAGCTTATATTGCAGCCTGCCCATTCATGAAGATGTCCATGATCTTTGCAAACCATATGATTTTAAAAGCAGCTGAGAAAGCAGAAACACTTCATATAATAGATTTTGGTATCCTTTATGGTTTTCAGTGGCCTGCTCTCATTCATTGCCTCTCAAGAAGACCTGGTGGACCTCCCAAATTACGTATTACAGGGGTAGAGCTTCCCTTAAGTGGTTTTCGACCAGAAGAAAGAGTCCAAGAGACAGGGCATCGCTTGGCAAAGTATTGTAAGCGATTTAATGTTCCTTTTGAGTACTATGCCATAGCCAAAAAATGGGAAACTGTCCAATTTGATGACCTCAAAGTTCAAAGAAATGAGGTGCTTGCTGTTAATTGTCTCTGCCGATTTAAGAACCTCCTTGATGAGACCGTTGTGGTAAACAGTCCAAGGGATACTGTTCTAAATTTAATTAGGAAGTTAAATCCTGATGTCTTTGTCCAAAGTGTTGTTAATGGATCCTATCGTGCACCCTTCTTTGTTTCACGCTTCCGAGAGGCACTATTCCACTTCTCTGCATTGTTTGATATGTTTGATAACAATTTGCCTCGTGAAGATCCGATGAGATTAGGGTTTGAGAAAGAGTTTATTGGACGTGAAGTTGTGAATATAGTAGCTTGTGAGGGCTCAGAAAGAATTGTGAGGCCAGAAACATATAAGCAGTGGCAGGTTCGGAACATGAGGGCTGGGTTCAGACAGCTGCCCTTGGACCGTGAAGTCATGAACAAAATAAAGGATAAAGTAAAAACGGGGTACAGCCCTGATTTTGTGGTTGATGAGGATGGCCGCTGGATGCTGCAGGGATGGAAGGGCAGAATTATGTTTTGTTCCGCCTGTTGGGCACCGCCTAGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

729

Amino Acids

81.64

Weight (kDa)

5.38

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 354 - 724 3e-118 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2048
Acc36I ACCTGC 1 cut(s) 1990
AccB1I GGYRCC 1 cut(s) 2173
AccB7I CCANNNNNTGG 1 cut(s) 1608
AccII CGCG 1 cut(s) 1213
AciI CCGC 9 cut(s) 372, 695, 743, 1024, 1213, 1274, 2119, 2163, 2177
AclWI GGATC 4 cut(s) 12, 1785, 1798, 1883
AcoI YGGCCR 1 cut(s) 2116
AcsI RAATTY 2 cut(s) 20, 1738
AcuI CTGAAG 1 cut(s) 1304
AfaI GTAC 5 cut(s) 71, 194, 311, 1589, 2087
AfiI CCNNNNNNNGG 9 cut(s) 371, 519, 520, 525, 932, 982, 1505, 1608, 2169
AflII CTTAAG 1 cut(s) 1501
AgsI TTSAA 7 cut(s) 34, 64, 92, 266, 792, 1208, 1643
AhdI GACNNNNNGTC 1 cut(s) 226
AjiI CACGTC 1 cut(s) 1928
AjnI CCWGG 4 cut(s) 201, 412, 518, 1456
AloI GAACNNNNNNTCC 2 cut(s) 559, 591
Alw21I GWGCWC 4 cut(s) 470, 1087, 1174, 1804
Alw26I GTCTC 7 cut(s) 285, 452, 534, 1106, 1529, 1676, 1694
Alw44I GTGCAC 2 cut(s) 1083, 1800
AlwI GGATC 4 cut(s) 12, 1785, 1798, 1883
AoxI GGCC 4 cut(s) 973, 1424, 1976, 2116
ApaLI GTGCAC 2 cut(s) 1083, 1800
ApeKI GCWGC 7 cut(s) 979, 1144, 1271, 1307, 1364, 2032, 2128
ApoI RAATTY 2 cut(s) 20, 1738
Asp700I GAANNNNTTC 1 cut(s) 1383
AspA2I CCTAGG 2 cut(s) 643, 2180
AspLEI GCGC 1 cut(s) 1213
AspS9I GGNCC 4 cut(s) 109, 416, 1463, 2041
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 733, 896, 1175
AvaII GGWCC 4 cut(s) 109, 416, 1463, 2041
AvrII CCTAGG 2 cut(s) 643, 2180
BaeGI GKGCMC 3 cut(s) 1087, 1804, 2176
BamHI GGATCC 2 cut(s) 4, 1790
BanI GGYRCC 1 cut(s) 2173
BanII GRGCYC 4 cut(s) 365, 470, 1069, 1961
BauI CACGAG 2 cut(s) 1109, 1881
BbsI GAAGAC 1 cut(s) 1459
Bbv12I GWGCWC 4 cut(s) 470, 1087, 1174, 1804
BbvI GCAGC 7 cut(s) 991, 1156, 1258, 1319, 1376, 2019, 2115
BccI CCATC 7 cut(s) 149, 362, 539, 562, 830, 2108, 2130
BciT130I CCWGG 4 cut(s) 203, 414, 520, 1458
BciVI GTATCC 2 cut(s) 1415, 1720
BclI TGATCA 3 cut(s) 37, 346, 1105
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 7 cut(s) 285, 452, 534, 1106, 1529, 1676, 1694
BfaI CTAG 8 cut(s) 402, 408, 462, 525, 644, 675, 1119, 2181
BfmI CTRYAG 2 cut(s) 977, 2129
BfrI CTTAAG 1 cut(s) 1501
BfuAI ACCTGC 1 cut(s) 1990
BfuI GTATCC 2 cut(s) 1415, 1720
BglI GCCNNNNNGGC 2 cut(s) 369, 2171
BglII AGATCT 2 cut(s) 94, 826
BisI GCNGC 9 cut(s) 980, 1024, 1145, 1272, 1308, 1365, 2033, 2119, 2129
BlnI CCTAGG 2 cut(s) 643, 2180
BlsI GCNGC 9 cut(s) 981, 1025, 1146, 1273, 1309, 1366, 2034, 2120, 2130
BmcAI AGTACT 1 cut(s) 1589
Bme1390I CCNGG 5 cut(s) 203, 414, 437, 520, 1458
Bme18I GGWCC 4 cut(s) 109, 416, 1463, 2041
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 1928
BmgT120I GGNCC 4 cut(s) 109, 416, 1463, 2041
BmiI GGNNCC 5 cut(s) 6, 111, 600, 1792, 2175
BmrFI CCNGG 5 cut(s) 203, 414, 437, 520, 1458
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 730, 1552, 2115
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 1459
BplI GAGNNNNNCTC 2 cut(s) 1168, 1200
BpmI CTGGAG 2 cut(s) 756, 851
BpuEI CTTGAG 2 cut(s) 173, 1432
BpuMI CCSGG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 1478
BsaBI GATNNNNATC 1 cut(s) 825
BsaI GGTCTC 2 cut(s) 534, 1694
BsaJI CCNNGG 5 cut(s) 519, 643, 1721, 2037, 2180
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 729, 759
Bsc4I CCNNNNNNNGG 9 cut(s) 371, 519, 520, 525, 932, 982, 1505, 1608, 2169
Bse1I ACTGG 5 cut(s) 120, 393, 508, 951, 1231
Bse3DI GCAATG 2 cut(s) 1186, 1438
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 4 cut(s) 203, 414, 520, 1458
BseDI CCNNGG 5 cut(s) 519, 643, 1721, 2037, 2180
BseGI GGATG 7 cut(s) 550, 573, 841, 991, 2119, 2130, 2141
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 9 cut(s) 371, 519, 520, 525, 932, 982, 1505, 1608, 2169
BseMI GCAATG 2 cut(s) 1186, 1438
BseMII CTCAG 5 cut(s) 264, 461, 1187, 1359, 1974
BseNI ACTGG 5 cut(s) 120, 393, 508, 951, 1231
BseRI GAGGAG 5 cut(s) 230, 290, 668, 856, 893
BseSI GKGCMC 3 cut(s) 1087, 1804, 2176
BseXI GCAGC 7 cut(s) 991, 1156, 1258, 1319, 1376, 2019, 2115
BseYI CCCAGC 1 cut(s) 2018
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 1213
BshFI GGCC 4 cut(s) 975, 1426, 1978, 2118
BshNI GGYRCC 1 cut(s) 2173
BsiHKAI GWGCWC 4 cut(s) 470, 1087, 1174, 1804
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 9 cut(s) 371, 519, 520, 525, 932, 982, 1505, 1608, 2169
BsmAI GTCTC 7 cut(s) 285, 452, 534, 1106, 1529, 1676, 1694
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 4 cut(s) 975, 1426, 1978, 2118
Bso31I GGTCTC 2 cut(s) 534, 1694
Bsp1286I GDGCHC 8 cut(s) 365, 470, 1069, 1087, 1174, 1804, 1961, 2176
Bsp143I GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
BspACI CCGC 9 cut(s) 372, 695, 743, 1024, 1213, 1274, 2119, 2163, 2177
BspANI GGCC 4 cut(s) 975, 1426, 1978, 2118
BspCNI CTCAG 5 cut(s) 265, 460, 1186, 1360, 1973
BspFNI CGCG 1 cut(s) 1213
BspHI TCATGA 2 cut(s) 1320, 2052
BspLI GGNNCC 5 cut(s) 6, 111, 600, 1792, 2175
BspMAI CTGCAG 2 cut(s) 981, 2133
BspMI ACCTGC 1 cut(s) 1990
BspPI GGATC 4 cut(s) 12, 1785, 1798, 1883
BspQI GCTCTTC 1 cut(s) 1074
BspT107I GGYRCC 1 cut(s) 2173
BspTI CTTAAG 1 cut(s) 1501
BspTNI GGTCTC 2 cut(s) 534, 1694
BsrDI GCAATG 2 cut(s) 1186, 1438
BsrI ACTGG 5 cut(s) 120, 393, 508, 951, 1231
BssECI CCNNGG 5 cut(s) 519, 643, 1721, 2037, 2180
BssMI GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
BssSI CACGAG 2 cut(s) 1109, 1881
BssT1I CCWWGG 4 cut(s) 643, 1721, 2037, 2180
Bst2BI CACGAG 2 cut(s) 1109, 1881
Bst2UI CCWGG 4 cut(s) 203, 414, 520, 1458
Bst4CI ACNGT 5 cut(s) 1618, 1705, 1718, 1732, 2045
Bst6I CTCTTC 2 cut(s) 1074, 1156
BstAFI CTTAAG 1 cut(s) 1501
BstAPI GCANNNNNTGC 2 cut(s) 988, 1141
BstBAI YACGTR 1 cut(s) 1478
BstC8I GCNNGC 5 cut(s) 977, 1222, 1312, 1428, 1659
BstDEI CTNAG 7 cut(s) 98, 273, 447, 611, 1173, 1368, 1960
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 7 cut(s) 550, 573, 841, 991, 2119, 2130, 2141
BstFNI CGCG 1 cut(s) 1213
BstHHI GCGC 1 cut(s) 1213
BstKTI GATC 9 cut(s) 7, 40, 97, 349, 829, 1108, 1338, 1793, 1891
BstMAI GTCTC 7 cut(s) 285, 452, 534, 1106, 1529, 1676, 1694
BstMBI GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
BstNI CCWGG 4 cut(s) 203, 414, 520, 1458
BstSCI CCNGG 5 cut(s) 201, 412, 435, 518, 1456
BstSFI CTRYAG 2 cut(s) 977, 2129
BstSLI GKGCMC 3 cut(s) 1087, 1804, 2176
BstSNI TACGTA 1 cut(s) 1478
BstUI CGCG 1 cut(s) 1213
BstV1I GCAGC 7 cut(s) 991, 1156, 1258, 1319, 1376, 2019, 2115
BstV2I GAAGAC 1 cut(s) 1459
BstX2I RGATCY 5 cut(s) 4, 94, 826, 1790, 1888
BstYI RGATCY 5 cut(s) 4, 94, 826, 1790, 1888
BsuI GTATCC 2 cut(s) 1415, 1720
BsuRI GGCC 4 cut(s) 975, 1426, 1978, 2118
BtgZI GCGATG 1 cut(s) 1529
BtrI CACGTC 1 cut(s) 1928
BtsCI GGATG 7 cut(s) 550, 573, 841, 991, 2119, 2130, 2141
BtsI GCAGTG 2 cut(s) 441, 2000
BtsIMutI CAGTG 6 cut(s) 270, 400, 441, 1224, 1427, 2000
BveI ACCTGC 1 cut(s) 1990
Cac8I GCNNGC 5 cut(s) 977, 1222, 1312, 1428, 1659
CciI TCATGA 2 cut(s) 1320, 2052
CfoI GCGC 1 cut(s) 1213
Cfr13I GGNCC 4 cut(s) 109, 416, 1463, 2041
CsiI ACCWGGT 2 cut(s) 201, 1456
Csp6I GTAC 5 cut(s) 70, 193, 310, 1588, 2086
CviAII CATG 9 cut(s) 223, 237, 248, 782, 1034, 1321, 1333, 2011, 2053
CviQI GTAC 5 cut(s) 70, 193, 310, 1588, 2086
DdeI CTNAG 7 cut(s) 98, 273, 447, 611, 1173, 1368, 1960
DpnI GATC 9 cut(s) 6, 39, 96, 348, 828, 1107, 1337, 1792, 1890
DpnII GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
DraI TTTAAA 1 cut(s) 1359
DrdI GACNNNNNNGTC 1 cut(s) 2048
DriI GACNNNNNGTC 1 cut(s) 226
DseDI GACNNNNNNGTC 1 cut(s) 2048
EaeI YGGCCR 1 cut(s) 2116
Eam1104I CTCTTC 2 cut(s) 1074, 1156
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 2 cut(s) 1074, 1156
EciI GGCGGA 1 cut(s) 2152
Ecl136II GAGCTC 1 cut(s) 468
Eco105I TACGTA 1 cut(s) 1478
Eco130I CCWWGG 4 cut(s) 643, 1721, 2037, 2180
Eco24I GRGCYC 4 cut(s) 365, 470, 1069, 1961
Eco31I GGTCTC 2 cut(s) 534, 1694
Eco47I GGWCC 4 cut(s) 109, 416, 1463, 2041
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 1304
EcoICRI GAGCTC 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoRII CCWGG 4 cut(s) 201, 412, 518, 1456
EcoT14I CCWWGG 4 cut(s) 643, 1721, 2037, 2180
EcoT38I GRGCYC 4 cut(s) 365, 470, 1069, 1961
ErhI CCWWGG 4 cut(s) 643, 1721, 2037, 2180
FaeI CATG 9 cut(s) 226, 240, 251, 785, 1037, 1324, 1336, 2014, 2056
FaqI GGGAC 1 cut(s) 496
FatI CATG 9 cut(s) 222, 236, 247, 781, 1033, 1320, 1332, 2010, 2052
FauNDI CATATG 1 cut(s) 1350
FbaI TGATCA 3 cut(s) 37, 346, 1105
Fnu4HI GCNGC 9 cut(s) 980, 1024, 1145, 1272, 1308, 1365, 2033, 2119, 2129
FokI GGATG 7 cut(s) 557, 580, 848, 998, 2126, 2137, 2148
FriOI GRGCYC 4 cut(s) 365, 470, 1069, 1961
Fsp4HI GCNGC 9 cut(s) 980, 1024, 1145, 1272, 1308, 1365, 2033, 2119, 2129
FspBI CTAG 8 cut(s) 402, 408, 462, 525, 644, 675, 1119, 2181
GlaI GCGC 1 cut(s) 1212
GluI GCNGC 9 cut(s) 980, 1024, 1145, 1272, 1308, 1365, 2033, 2119, 2129
GsaI CCCAGC 1 cut(s) 2022
GsuI CTGGAG 2 cut(s) 756, 851
HaeIII GGCC 4 cut(s) 975, 1426, 1978, 2118
HapII CCGG 1 cut(s) 437
HhaI GCGC 1 cut(s) 1213
Hin1II CATG 9 cut(s) 226, 240, 251, 785, 1037, 1324, 1336, 2014, 2056
Hin6I GCGC 1 cut(s) 1211
HinP1I GCGC 1 cut(s) 1211
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 1296
HinfI GANTC 7 cut(s) 227, 278, 398, 428, 805, 1030, 1527
HpaII CCGG 1 cut(s) 437
HphI GGTGA 3 cut(s) 733, 896, 1175
Hpy166II GTNNAC 5 cut(s) 427, 1085, 1463, 1714, 1802
Hpy8I GTNNAC 5 cut(s) 427, 1085, 1463, 1714, 1802
Hpy99I CGWCG 3 cut(s) 142, 541, 544
HpyAV CCTTC 6 cut(s) 429, 525, 1009, 1039, 1816, 2134
HpyCH4III ACNGT 5 cut(s) 1618, 1705, 1718, 1732, 2045
HpyCH4IV ACGT 3 cut(s) 10, 1477, 1927
HpyF3I CTNAG 7 cut(s) 98, 273, 447, 611, 1173, 1368, 1960
HpySE526I ACGT 3 cut(s) 10, 1477, 1927
Hsp92II CATG 9 cut(s) 226, 240, 251, 785, 1037, 1324, 1336, 2014, 2056
HspAI GCGC 1 cut(s) 1211
Ksp22I TGATCA 3 cut(s) 37, 346, 1105
Kzo9I GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 2 cut(s) 465, 962
Lsp1109I GCAGC 7 cut(s) 991, 1156, 1258, 1319, 1376, 2019, 2115
LweI GCATC 3 cut(s) 730, 1552, 2115
MabI ACCWGGT 2 cut(s) 201, 1456
MaeI CTAG 8 cut(s) 402, 408, 462, 525, 644, 675, 1119, 2181
MaeII ACGT 3 cut(s) 10, 1477, 1927
MaeIII GTNAC 5 cut(s) 80, 122, 439, 748, 845
MalI GATC 9 cut(s) 6, 39, 96, 348, 828, 1107, 1337, 1792, 1890
MboI GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 5 cut(s) 4, 94, 826, 1790, 1888
MhlI GDGCHC 8 cut(s) 365, 470, 1069, 1087, 1174, 1804, 1961, 2176
MlyI GAGTC 4 cut(s) 236, 287, 422, 1536
MmeI TCCRAC 2 cut(s) 522, 979
MroXI GAANNNNTTC 1 cut(s) 1383
MslI CAYNNNNRTG 1 cut(s) 1325
MspA1I CMGCKG 4 cut(s) 1271, 1367, 2032, 2121
MspCI CTTAAG 1 cut(s) 1501
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 5 cut(s) 203, 414, 437, 520, 1458
MunI CAATTG 1 cut(s) 683
MvaI CCWGG 4 cut(s) 203, 414, 520, 1458
MvnI CGCG 1 cut(s) 1213
NciI CCSGG 1 cut(s) 437
NdeI CATATG 1 cut(s) 1350
NdeII GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
NlaIII CATG 9 cut(s) 226, 240, 251, 785, 1037, 1324, 1336, 2014, 2056
NlaIV GGNNCC 5 cut(s) 6, 111, 600, 1792, 2175
NmuCI GTSAC 2 cut(s) 80, 439
PagI TCATGA 2 cut(s) 1320, 2052
PciSI GCTCTTC 1 cut(s) 1074
PdmI GAANNNNTTC 1 cut(s) 1383
PfeI GAWTC 3 cut(s) 398, 805, 1030
PflMI CCANNNNNTGG 1 cut(s) 1608
PkrI GCNGC 9 cut(s) 981, 1025, 1146, 1273, 1309, 1366, 2034, 2120, 2130
PleI GAGTC 4 cut(s) 235, 286, 422, 1535
PpsI GAGTC 4 cut(s) 235, 286, 422, 1535
Ppu21I YACGTR 1 cut(s) 1478
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 4 cut(s) 201, 412, 518, 1456
PspFI CCCAGC 1 cut(s) 2018
PspGI CCWGG 4 cut(s) 201, 412, 518, 1456
PspN4I GGNNCC 5 cut(s) 6, 111, 600, 1792, 2175
PspPI GGNCC 4 cut(s) 109, 416, 1463, 2041
PstI CTGCAG 2 cut(s) 981, 2133
PsuI RGATCY 5 cut(s) 4, 94, 826, 1790, 1888
PvuII CAGCTG 3 cut(s) 1271, 1367, 2032
RsaI GTAC 5 cut(s) 71, 194, 311, 1589, 2087
RsaNI GTAC 5 cut(s) 70, 193, 310, 1588, 2086
RseI CAYNNNNRTG 1 cut(s) 1325
SacI GAGCTC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 1074
SatI GCNGC 9 cut(s) 980, 1024, 1145, 1272, 1308, 1365, 2033, 2119, 2129
Sau3AI GATC 9 cut(s) 4, 37, 94, 346, 826, 1105, 1335, 1790, 1888
Sau96I GGNCC 4 cut(s) 109, 416, 1463, 2041
ScaI AGTACT 1 cut(s) 1589
SchI GAGTC 4 cut(s) 236, 287, 422, 1536
ScrFI CCNGG 5 cut(s) 203, 414, 437, 520, 1458
SduI GDGCHC 8 cut(s) 365, 470, 1069, 1087, 1174, 1804, 1961, 2176
SexAI ACCWGGT 2 cut(s) 201, 1456
SfaNI GCATC 3 cut(s) 730, 1552, 2115
SfcI CTRYAG 2 cut(s) 977, 2129
SinI GGWCC 4 cut(s) 109, 416, 1463, 2041
SmiMI CAYNNNNRTG 1 cut(s) 1325
SmlI CTYRAG 3 cut(s) 188, 1447, 1501
SmoI CTYRAG 3 cut(s) 188, 1447, 1501
SnaBI TACGTA 1 cut(s) 1478
SsiI CCGC 9 cut(s) 372, 695, 743, 1024, 1213, 1274, 2119, 2163, 2177
SspMI CTAG 8 cut(s) 402, 408, 462, 525, 644, 675, 1119, 2181
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 5 cut(s) 201, 412, 435, 518, 1456
StyI CCWWGG 4 cut(s) 643, 1721, 2037, 2180
TaaI ACNGT 5 cut(s) 1618, 1705, 1718, 1732, 2045
TaiI ACGT 3 cut(s) 13, 1480, 1930
TaqI TCGA 2 cut(s) 140, 1513
TatI WGTACW 2 cut(s) 192, 1587
TauI GCSGC 2 cut(s) 1026, 2121
TfiI GAWTC 3 cut(s) 398, 805, 1030
TscAI CASTG 6 cut(s) 277, 400, 448, 1231, 1427, 2000
TseFI GTSAC 2 cut(s) 80, 439
TseI GCWGC 7 cut(s) 979, 1144, 1271, 1307, 1364, 2032, 2128
Tsp45I GTSAC 2 cut(s) 80, 439
TspDTI ATGAA 9 cut(s) 636, 770, 960, 1022, 1309, 1337, 1376, 1427, 2069
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 6 cut(s) 277, 400, 448, 1231, 1427, 2000
Van91I CCANNNNNTGG 1 cut(s) 1608
Vha464I CTTAAG 1 cut(s) 1501
VneI GTGCAC 2 cut(s) 1083, 1800
VpaK11BI GGWCC 4 cut(s) 109, 416, 1463, 2041
XagI CCTNNNNNAGG 1 cut(s) 980
XapI RAATTY 2 cut(s) 20, 1738
XmaJI CCTAGG 2 cut(s) 643, 2180
XmnI GAANNNNTTC 1 cut(s) 1383
XspI CTAG 8 cut(s) 402, 408, 462, 525, 644, 675, 1119, 2181
ZrmI AGTACT 1 cut(s) 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.