AT3G18940

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002770
Physical Location & Seq
Reverse (-)
6526734 .. 6529173
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18940.1

Sequence Viewer

Length: 846 bp
ATGGAGTTTGTTGTTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCAGCATTGTCAATTGGGAATGTAGGACAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAGAGTTGGTTATCTTGATGATCCAAATCTGCTTCCTTGTGTTGGAAATGATGCTTATGGCCCTCTTCCTTGTGGCGAGATCGCCCTTCCTCTCGAGGTTTATGAGTCATCTTCAATTGCTACTACCCTTGCTCAGCAACGGTCTCCAGTTGCAAAGGGAATGATGATTAAATTTGCGGAGAATATAGCCAATTTTGCTGCTTCAAGTGGAAAGAAGCACATCATTGTGTTATCGAGTTTAGACTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAACGCTGAATCTGATGGAAGAGATGATCACTGTGAAAGGCTTGGGTTTGGAAGATTGCACGAGTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAAAAGAACAGTGTAGAAGAGCTGGCGTTGCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTTGCCATTTGCAGCTCTTTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGATGACATGCCTGCTATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTTCATCTAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGGGAAATGGCAGATACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCGGATATGTCTATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

281

Amino Acids

30.91

Weight (kDa)

4.58

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 18 - 249 4.3e-22 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 1 cut(s) 305
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 3 cut(s) 555, 705, 723
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 6 cut(s) 17, 243, 333, 539, 587, 655
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 2 cut(s) 276, 684
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 2 cut(s) 187, 406
ApeKI GCWGC 3 cut(s) 326, 382, 620
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 708
AspS9I GGNCC 2 cut(s) 188, 407
AvaI CYCGRG 1 cut(s) 221
BanII GRGCYC 1 cut(s) 823
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 823
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 313, 369, 632
BccI CCATC 1 cut(s) 437
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 276, 684
BfaI CTAG 3 cut(s) 29, 107, 716
BisI GCNGC 3 cut(s) 327, 383, 621
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 3 cut(s) 328, 384, 622
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 188, 407
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 2 cut(s) 524, 720
Bpu1102I GCTNAGC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 763
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 124, 275
Bse8I GATNNNNATC 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 826
BseDI CCNNGG 1 cut(s) 763
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 3 cut(s) 275, 645, 711
BseNI ACTGG 2 cut(s) 124, 275
BseRI GAGGAG 1 cut(s) 813
BseXI GCAGC 3 cut(s) 313, 369, 632
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 2 cut(s) 189, 408
BsiHKAI GWGCWC 1 cut(s) 823
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 827
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 276, 684
BsnI GGCC 2 cut(s) 189, 408
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 823
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 4 cut(s) 100, 148, 207, 454
Bsp1720I GCTNAGC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 189, 408
BspCNI CTCAG 3 cut(s) 274, 644, 712
BspEI TCCGGA 1 cut(s) 826
BspPI GGATC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 549
BspTNI GGTCTC 1 cut(s) 276
BsrI ACTGG 2 cut(s) 124, 275
BssECI CCNNGG 1 cut(s) 763
BssMI GATC 4 cut(s) 100, 148, 207, 454
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 488
Bst4CI ACNGT 5 cut(s) 270, 461, 548, 680, 795
Bst6I CTCTTC 4 cut(s) 198, 442, 549, 800
BstC8I GCNNGC 4 cut(s) 93, 561, 611, 668
BstDEI CTNAG 5 cut(s) 261, 524, 631, 720, 732
BstDSI CCRYGG 1 cut(s) 763
BstKTI GATC 4 cut(s) 103, 151, 210, 457
BstMAI GTCTC 2 cut(s) 276, 684
BstMBI GATC 4 cut(s) 100, 148, 207, 454
BstMWI GCNNNNNNNGC 3 cut(s) 323, 565, 641
BstNSI RCATGY 1 cut(s) 666
BstV1I GCAGC 3 cut(s) 313, 369, 632
BstV2I GAAGAC 1 cut(s) 594
BsuRI GGCC 2 cut(s) 189, 408
BtgI CCRYGG 1 cut(s) 763
BtsIMutI CAGTG 2 cut(s) 457, 553
Cac8I GCNNGC 4 cut(s) 93, 561, 611, 668
Cfr13I GGNCC 2 cut(s) 188, 407
Csp6I GTAC 1 cut(s) 520
CviAII CATG 3 cut(s) 663, 764, 801
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 5 cut(s) 261, 524, 631, 720, 732
DpnI GATC 4 cut(s) 102, 150, 209, 456
DpnII GATC 4 cut(s) 100, 148, 207, 454
Eam1104I CTCTTC 4 cut(s) 198, 442, 549, 800
EarI CTCTTC 4 cut(s) 198, 442, 549, 800
Ecl136II GAGCTC 1 cut(s) 821
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 823
Eco31I GGTCTC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 821
Eco57I CTGAAG 3 cut(s) 555, 705, 723
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 821
EcoT14I CCWWGG 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 3 cut(s) 666, 767, 804
FalI AAGNNNNNCTT 4 cut(s) 567, 599, 696, 728
FatI CATG 3 cut(s) 662, 763, 800
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 327, 383, 621
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 3 cut(s) 327, 383, 621
FspBI CTAG 3 cut(s) 29, 107, 716
GluI GCNGC 3 cut(s) 327, 383, 621
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 189, 408
HapII CCGG 1 cut(s) 827
Hin1II CATG 3 cut(s) 666, 767, 804
HindIII AAGCTT 2 cut(s) 607, 734
HinfI GANTC 4 cut(s) 233, 437, 497, 748
HpaII CCGG 1 cut(s) 827
Hpy188I TCNGA 5 cut(s) 442, 502, 574, 685, 747
Hpy188III TCNNGA 6 cut(s) 143, 221, 402, 701, 752, 827
HpyAV CCTTC 6 cut(s) 14, 224, 497, 579, 680, 767
HpyCH4III ACNGT 5 cut(s) 270, 461, 548, 680, 795
HpyCH4V TGCA 5 cut(s) 125, 281, 385, 487, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 565, 641
HpyF3I CTNAG 5 cut(s) 261, 524, 631, 720, 732
Hsp92II CATG 3 cut(s) 666, 767, 804
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 100, 148, 207, 454
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 2 cut(s) 818, 826
LpnPI CCDG 9 cut(s) 75, 105, 288, 398, 545, 680, 714, 765, 840
Lsp1109I GCAGC 3 cut(s) 313, 369, 632
LweI GCATC 1 cut(s) 169
MaeI CTAG 3 cut(s) 29, 107, 716
MaeIII GTNAC 1 cut(s) 674
MalI GATC 4 cut(s) 102, 150, 209, 456
MboI GATC 4 cut(s) 100, 148, 207, 454
MfeI CAATTG 2 cut(s) 72, 243
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 4 cut(s) 72, 243, 299, 319
MlyI GAGTC 2 cut(s) 242, 742
MmeI TCCRAC 2 cut(s) 151, 494
MnlI CCTC 7 cut(s) 201, 217, 228, 398, 641, 715, 834
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 3 cut(s) 297, 639, 844
MslI CAYNNNNRTG 2 cut(s) 353, 492
MspI CCGG 1 cut(s) 827
MunI CAATTG 2 cut(s) 72, 243
MwoI GCNNNNNNNGC 3 cut(s) 323, 565, 641
NcoI CCATGG 1 cut(s) 763
NdeII GATC 4 cut(s) 100, 148, 207, 454
NlaIII CATG 3 cut(s) 666, 767, 804
NspI RCATGY 1 cut(s) 666
PaeR7I CTCGAG 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 437, 497
PkrI GCNGC 3 cut(s) 328, 384, 622
PleI GAGTC 2 cut(s) 241, 742
PpsI GAGTC 2 cut(s) 241, 742
Psp124BI GAGCTC 1 cut(s) 823
PspFI CCCAGC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 188, 407
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 2 cut(s) 353, 492
SacI GAGCTC 1 cut(s) 823
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 3 cut(s) 297, 639, 844
SatI GCNGC 3 cut(s) 327, 383, 621
Sau3AI GATC 4 cut(s) 100, 148, 207, 454
Sau96I GGNCC 2 cut(s) 188, 407
SchI GAGTC 2 cut(s) 242, 742
SduI GDGCHC 1 cut(s) 823
SfaNI GCATC 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 353, 492
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 72, 243, 299, 319
SsiI CCGC 1 cut(s) 305
SspMI CTAG 3 cut(s) 29, 107, 716
SstI GAGCTC 1 cut(s) 823
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 5 cut(s) 270, 461, 548, 680, 795
TaqI TCGA 4 cut(s) 47, 222, 362, 401
TasI AATT 4 cut(s) 72, 243, 299, 319
TfiI GAWTC 2 cut(s) 437, 497
Tru1I TTAA 3 cut(s) 297, 639, 844
Tru9I TTAA 3 cut(s) 297, 639, 844
TscAI CASTG 2 cut(s) 464, 553
TseI GCWGC 3 cut(s) 326, 382, 620
TspDTI ATGAA 4 cut(s) 51, 594, 717, 789
TspRI CASTG 2 cut(s) 464, 553
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 666
XhoI CTCGAG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 3 cut(s) 29, 107, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.