Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Reverse (-)

7937262 .. 7940309

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAATTCGTTGCTGAACAAGGCAAACACGCCCATGGTGGCTCTTCCACTCTGATCCTGCCAGCTTTGTCAATTGGAAATGTGGGGCAGCTTGCGGTGGACCTTCTAGTTGCATCAATGAAAGCAGAGAGAGTTGGGTATTTGGACACTCCATTTGTGGTTCCTTGTGTCGGCAATGATGCCTATGGGCCTGTTCCTAATGGGGAGCTTGCTCTCCCTCTTGAAGCTTATGATTCATCTTCCAATGCAATGTCTCTAATCCAACAAAGGTCCCCTGTTGTAAAGGGAAGGATGATTGAATTTGCTAAATGTGTGGCTGATTATGTTGCTGCTAGTGGAAAGAAGAATGTTGTTGTGCTCTCGAGCTTGGATTTTGGGAGGTGGCAGAGAGTTGATATGTCAAGTGGTTTGCAGATGCATTACCTGTCTAGCACCAATTCAGATGGAACAGATGATTATTGTGAACAGCTTGGGTGGAAAAGGCTGCAGGAATATAACCCCACTCAGAAGGCCTGGAAGTATCTCAATACATTAGCTGAGGGCAATGCTGTGCCGGAGGACATCTTGCCCTTTGAAGGCGAACTAGAAGAAGAAGAATATTACTACCCGAGCTTGCCATTCGCGGCACTTTTTTCTTGTCTCAAGGCCAAAGGATTGAAGGTTACCTGCTTATTATGCTACTGCTCAGAAGGAGACAACATACCTGATGCTTTCCATTTGGCCGAGGCAGCATGCAAACTTCTGCAATTAAATCCCAGTAATTTCCATGGCAACAATGATAAATGGGTTATTCCATGTTCTTGGAAGACTCTGTATGGACCACCGGCCGATATGTCCCTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

282

Amino Acids

30.81

Weight (kDa)

4.84

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	674
AccII	CGCG	1 cut(s)	623
AciI	CCGC	2 cut(s)	95, 623
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	2 cut(s)	720, 825
AcsI	RAATTY	2 cut(s)	5, 299
AfiI	CCNNNNNNNGG	2 cut(s)	170, 575
AgsI	TTSAA	4 cut(s)	224, 299, 575, 658
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	8 cut(s)	65, 91, 208, 227, 366, 469, 536, 612
AluI	AGCT	8 cut(s)	65, 91, 208, 227, 366, 469, 536, 612
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	258, 644, 687
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	361, 607
AoxI	GGCC	5 cut(s)	188, 510, 645, 720, 825
ApeKI	GCWGC	4 cut(s)	88, 329, 484, 728
ApoI	RAATTY	2 cut(s)	5, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspS9I	GGNCC	4 cut(s)	100, 188, 270, 818
AvaI	CYCGRG	2 cut(s)	361, 607
AvaII	GGWCC	3 cut(s)	100, 270, 818
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	100, 316, 471, 740
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	258, 644, 687
BfaI	CTAG	4 cut(s)	107, 333, 429, 584
BfmI	CTRYAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	5 cut(s)	89, 330, 485, 624, 729
BlsI	GCNGC	5 cut(s)	90, 331, 486, 625, 730
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	3 cut(s)	100, 270, 818
BmeT110I	CYCGRG	2 cut(s)	361, 607
BmgT120I	GGNCC	4 cut(s)	100, 188, 270, 818
BmiI	GGNNCC	2 cut(s)	162, 272
BmrFI	CCNGG	1 cut(s)	514
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	4 cut(s)	122, 169, 405, 697
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	812
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	34, 723, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 575
Bse118I	RCCGGY	1 cut(s)	823
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	3 cut(s)	181, 255, 550
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	3 cut(s)	34, 723, 766
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	170, 575
BseMI	GCAATG	3 cut(s)	181, 255, 550
BseMII	CTCAG	3 cut(s)	518, 528, 699
BseNI	ACTGG	1 cut(s)	756
BseX3I	CGGCCG	1 cut(s)	825
BseXI	GCAGC	4 cut(s)	100, 316, 471, 740
Bsh1236I	CGCG	1 cut(s)	623
Bsh1285I	CGRYCG	1 cut(s)	828
BshFI	GGCC	5 cut(s)	190, 512, 647, 722, 827
BsiEI	CGRYCG	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	2 cut(s)	361, 607
BsiSI	CCGG	2 cut(s)	554, 824
BslFI	GGGAC	2 cut(s)	256, 820
BslI	CCNNNNNNNGG	2 cut(s)	170, 575
BsmAI	GTCTC	3 cut(s)	258, 644, 687
BsmFI	GGGAC	2 cut(s)	256, 820
BsnI	GGCC	5 cut(s)	190, 512, 647, 722, 827
BsoBI	CYCGRG	2 cut(s)	361, 607
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	54
Bsp19I	CCATGG	2 cut(s)	34, 766
BspACI	CCGC	2 cut(s)	95, 623
BspANI	GGCC	5 cut(s)	190, 512, 647, 722, 827
BspCNI	CTCAG	3 cut(s)	517, 529, 698
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	2 cut(s)	162, 272
BspMAI	CTGCAG	1 cut(s)	489
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	49
BsrDI	GCAATG	3 cut(s)	181, 255, 550
BsrFI	RCCGGY	1 cut(s)	823
BsrI	ACTGG	1 cut(s)	756
BssAI	RCCGGY	1 cut(s)	823
BssECI	CCNNGG	3 cut(s)	34, 723, 766
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	34, 766
Bst2UI	CCWGG	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	5 cut(s)	63, 93, 210, 614, 733
BstDEI	CTNAG	3 cut(s)	504, 537, 685
BstDSI	CCRYGG	2 cut(s)	34, 766
BstEII	GGTNACC	1 cut(s)	661
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	623
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	3 cut(s)	258, 644, 687
BstMBI	GATC	1 cut(s)	54
BstMCI	CGRYCG	1 cut(s)	828
BstMWI	GCNNNNNNNGC	2 cut(s)	675, 728
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	735
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	4 cut(s)	100, 316, 471, 740
BstV2I	GAAGAC	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstZI	CGGCCG	1 cut(s)	825
BsuRI	GGCC	5 cut(s)	190, 512, 647, 722, 827
BtgI	CCRYGG	2 cut(s)	34, 766
BtsCI	GGATG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	5 cut(s)	63, 93, 210, 614, 733
Cfr10I	RCCGGY	1 cut(s)	823
Cfr13I	GGNCC	4 cut(s)	100, 188, 270, 818
CviAII	CATG	4 cut(s)	35, 732, 767, 795
DdeI	CTNAG	3 cut(s)	504, 537, 685
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	720, 825
EagI	CGGCCG	1 cut(s)	825
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	34, 766
Eco147I	AGGCCT	1 cut(s)	512
Eco47I	GGWCC	3 cut(s)	100, 270, 818
Eco52I	CGGCCG	1 cut(s)	825
Eco88I	CYCGRG	2 cut(s)	361, 607
Eco91I	GGTNACC	1 cut(s)	661
EcoO109I	RGGNCCY	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	2 cut(s)	34, 766
EcoT22I	ATGCAT	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	34, 766
FaeI	CATG	4 cut(s)	38, 735, 770, 798
FaqI	GGGAC	2 cut(s)	256, 820
FatI	CATG	4 cut(s)	34, 731, 766, 794
Fnu4HI	GCNGC	5 cut(s)	89, 330, 485, 624, 729
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	5 cut(s)	89, 330, 485, 624, 729
FspBI	CTAG	4 cut(s)	107, 333, 429, 584
GluI	GCNGC	5 cut(s)	89, 330, 485, 624, 729
HaeIII	GGCC	5 cut(s)	190, 512, 647, 722, 827
HapII	CCGG	2 cut(s)	554, 824
Hin1II	CATG	4 cut(s)	38, 735, 770, 798
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	233, 808
HpaII	CCGG	2 cut(s)	554, 824
Hpy166II	GTNNAC	2 cut(s)	100, 464
Hpy188I	TCNGA	4 cut(s)	54, 442, 507, 688
Hpy188III	TCNNGA	2 cut(s)	221, 361
Hpy8I	GTNNAC	2 cut(s)	100, 464
HpyAV	CCTTC	6 cut(s)	113, 282, 502, 569, 652, 683
HpyCH4V	TGCA	7 cut(s)	113, 248, 412, 418, 487, 735, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	675, 728
HpyF3I	CTNAG	3 cut(s)	504, 537, 685
Hsp92II	CATG	4 cut(s)	38, 735, 770, 798
Kzo9I	GATC	1 cut(s)	54
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	4 cut(s)	100, 316, 471, 740
LweI	GCATC	4 cut(s)	122, 169, 405, 697
MaeI	CTAG	4 cut(s)	107, 333, 429, 584
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	7 cut(s)	36, 231, 355, 599, 602, 605, 817
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	6 cut(s)	5, 72, 299, 436, 746, 760
MlyI	GAGTC	1 cut(s)	802
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	228, 372, 532, 550, 718
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	1 cut(s)	749
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	2 cut(s)	554, 824
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	2 cut(s)	675, 728
NcoI	CCATGG	2 cut(s)	34, 766
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	4 cut(s)	38, 735, 770, 798
NlaIV	GGNNCC	2 cut(s)	162, 272
NmeAIII	GCCGAG	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	735
PaeI	GCATGC	1 cut(s)	735
PaeR7I	CTCGAG	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	90, 331, 486, 625, 730
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
PpuMI	RGGWCCY	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	162, 272
PspPI	GGNCC	4 cut(s)	100, 188, 270, 818
PspPPI	RGGWCCY	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	5 cut(s)	89, 330, 485, 624, 729
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	4 cut(s)	100, 188, 270, 818
SchI	GAGTC	1 cut(s)	802
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	4 cut(s)	122, 169, 405, 697
SfcI	CTRYAG	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	361
SinI	GGWCC	3 cut(s)	100, 270, 818
SlaI	CTCGAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	361, 641
SmoI	CTYRAG	2 cut(s)	361, 641
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	6 cut(s)	5, 72, 299, 436, 746, 760
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	2 cut(s)	95, 623
SspI	AATATT	1 cut(s)	599
SspMI	CTAG	4 cut(s)	107, 333, 429, 584
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	2 cut(s)	34, 766
TaqI	TCGA	1 cut(s)	362
TasI	AATT	6 cut(s)	5, 72, 299, 436, 746, 760
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TseI	GCWGC	4 cut(s)	88, 329, 484, 728
TspDTI	ATGAA	2 cut(s)	134, 225
VpaK11BI	GGWCC	3 cut(s)	100, 270, 818
XapI	RAATTY	2 cut(s)	5, 299
XceI	RCATGY	1 cut(s)	735
XhoI	CTCGAG	1 cut(s)	361
XspI	CTAG	4 cut(s)	107, 333, 429, 584
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.