FvH4_5g16250

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002770
Physical Location & Seq
Reverse (-)
9271867 .. 9272606
740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16250.t1

Sequence Viewer

Length: 315 bp
ATGGAGTTCATTCCCGAACAGGGCACTCACAGCCACGCCGACTCCTCCACTCTAATCCTGCCGGCGCTGTCGATCGGAAATGTGGGCCAGCTCGCCGTGGATCTTTTAGTGGCGTCGTCGAAGGCGGACAGAGTCGGGTTTCTGGATAGTCCGTATGTTCTTCCTTGTGTTGGCAACGATGCATATGGGCCTGTTCCTCAAGGCCAACTTGCTCTTCCTCTTGAAGCTTATGAATCGGCTTCTAATGGGATAGCTTTAATCCAGCAAAGGTCACCTGCTGTTAAGACTCTCAAGGACCGGTCTCTAAACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

105

Amino Acids

10.93

Weight (kDa)

4.82

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 18 - 95 7.8e-13 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AciI CCGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 20, 170
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 3 cut(s) 91, 227, 254
AluI AGCT 3 cut(s) 91, 227, 254
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 108
AoxI GGCC 3 cut(s) 85, 188, 202
AsiGI ACCGGT 1 cut(s) 297
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 85, 188, 295
AsuHPI GGTGA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 85, 188, 295
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 2 cut(s) 183, 275
BsaHI GRCGYC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 170
Bse118I RCCGGY 2 cut(s) 61, 297
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 20, 170
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 87, 190, 204
BshTI ACCGGT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 62, 298
BslI CCNNNNNNNGG 2 cut(s) 20, 170
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 3 cut(s) 87, 190, 204
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 72, 100
BspACI CCGC 1 cut(s) 125
BspANI GGCC 3 cut(s) 87, 190, 204
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 306
BsrFI RCCGGY 2 cut(s) 61, 297
BssAI RCCGGY 2 cut(s) 61, 297
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 72, 100
BssNI GRCGYC 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 63, 89, 93
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 75, 103
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 2 cut(s) 72, 100
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 87, 190, 204
BtgI CCRYGG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 63, 89, 93
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 2 cut(s) 61, 297
Cfr13I GGNCC 3 cut(s) 85, 188, 295
CseI GACGC 1 cut(s) 102
CspAI ACCGGT 1 cut(s) 297
CviJI RGCY 8 cut(s) 33, 87, 91, 190, 204, 227, 239, 254
CviKI_1 RGCY 8 cut(s) 33, 87, 91, 190, 204, 227, 239, 254
DpnI GATC 2 cut(s) 74, 102
DpnII GATC 2 cut(s) 72, 100
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 270
EcoO65I GGTNACC 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 184
FaiI YATR 5 cut(s) 156, 184, 186, 231, 313
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FauNDI CATATG 1 cut(s) 184
GlaI GCGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 3 cut(s) 87, 190, 204
HapII CCGG 2 cut(s) 62, 298
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 113
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 4 cut(s) 41, 132, 233, 286
HpaII CCGG 2 cut(s) 62, 298
HphI GGTGA 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 3 cut(s) 14, 143, 221
Hpy99I CGWCG 2 cut(s) 118, 121
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 113
HspAI GCGC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 72, 100
LguI GCTCTTC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 5, 71, 75, 101, 128, 204, 275, 288, 311
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 74, 102
MboI GATC 2 cut(s) 72, 100
MboII GAAGA 2 cut(s) 152, 206
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 26
MlyI GAGTC 3 cut(s) 35, 141, 280
MnlI CCTC 3 cut(s) 55, 207, 228
Mph1103I ATGCAT 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 2 cut(s) 257, 282
MspI CCGG 2 cut(s) 62, 298
MwoI GCNNNNNNNGC 1 cut(s) 30
NaeI GCCGGC 1 cut(s) 63
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 72, 100
NgoMIV GCCGGC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 297
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 3 cut(s) 35, 140, 280
PpsI GAGTC 3 cut(s) 35, 140, 280
PspEI GGTNACC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 85, 188, 295
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 131
PvuI CGATCG 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 257, 282
Sau3AI GATC 2 cut(s) 72, 100
Sau96I GGNCC 3 cut(s) 85, 188, 295
SchI GAGTC 3 cut(s) 35, 141, 280
SduI GDGCHC 1 cut(s) 26
SetI ASST 6 cut(s) 93, 229, 256, 272, 277, 312
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 198, 290
SmoI CTYRAG 2 cut(s) 198, 290
SsiI CCGC 1 cut(s) 125
TaqI TCGA 2 cut(s) 71, 119
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 257, 282
Tru9I TTAA 2 cut(s) 257, 282
TseFI GTSAC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.