Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Reverse (-)

79163940 .. 79164914

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATGTTGATCCATCATCCCTCTGTATTTCTCCACCTGGGTTACATTCTGTTGATGAGGTTGTGTCTAGTGGTGTCCTCTCAGTAAGCAGACAGAGGTCCTTGTTTAACACAGAAACTGAAGATCTGCTTTCCACAGATGATCCTCTCACTAATCCAAGTGAATATGAGGATGATATTTTAGATGAAAATTGCGAAAAAAATGTGATGAGTACGAATCCACTCTCCTTTCATATCCCTTGTTTAACAATGGAGTTTGTGGAGCAATGCACGGTACCCCATCCTAATGATTTCCACAGCCATGAAGTCAATCCCACGGTTACTTTGAAAGTATGTGATGACAATACCGTTAATAACAATACCTCCCCATCTTCATCTGTGCCTCTTGAACCACAAGCTTCAGGTGTCATAGAAAATGAGAACATGGAAATTGAAAGTATGGACGGAATGGACTTTGTGGAGCATTGCGCATTAACCAATCCCAACAGTAACCACAGCCATGATATCGATATTGAGCCTACTGTTATTTCCAAAAGATCTCCGGACAATACTGTTTTTAACAAGACCTCTGCATCTTCATCCATGCCTGTTGAATCAGAAATGGTTGAAGTGGCTGAAACTTCAGGTTTCATTTTAGAAAATGATAGAATGGAAATTGGAAGTGAGAATGGTAGCACAAGCAAGCACAAATTGGACGGTGTTCGTGGTTGTATGATAAATGGTTCAGATTGTAGTCGGGATTCTGAGTCAGTTGGCAATGCGATGGTTGTGTACTCAGAACCATTGCTCAAGTTCTCATCAACATCAAGTTGCAACAAGGAAGAGCTGCCTGTTGAGAATGGGGCTACTGAAACTGGGTCTGGTGAGAAGTCATCTTCAATCACTGAATCTTATCTTAAAAAGTGTAAACTTCAAGAGGGTGCCGAAATCATCAACAACAATGAGGCGATCGATCCACCAGCCAGTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

324

Amino Acids

35.18

Weight (kDa)

4.25

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	469
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	274, 920
AccIII	TCCGGA	1 cut(s)	541
AclWI	GGATC	3 cut(s)	5, 137, 947
AcuI	CTGAAG	3 cut(s)	141, 384, 606
AfaI	GTAC	3 cut(s)	214, 276, 773
AgsI	TTSAA	7 cut(s)	328, 389, 434, 593, 608, 879, 914
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	398, 826
AluI	AGCT	2 cut(s)	398, 826
AlwI	GGATC	3 cut(s)	5, 137, 947
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	826
Asp718I	GGTACC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	99
BanI	GGYRCC	2 cut(s)	274, 920
BbvI	GCAGC	1 cut(s)	813
BccI	CCATC	4 cut(s)	22, 288, 376, 757
BciT130I	CCWGG	1 cut(s)	39
BfaI	CTAG	1 cut(s)	69
BglII	AGATCT	2 cut(s)	124, 536
BisI	GCNGC	1 cut(s)	827
BlsI	GCNGC	1 cut(s)	828
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	276, 922
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	864
BmsI	GCATC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	864
BoxI	GACNNNNGTC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	773
Bsa29I	ATCGAT	2 cut(s)	507, 951
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	38, 315
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	2 cut(s)	859, 963
Bse3DI	GCAATG	4 cut(s)	272, 463, 763, 782
Bse8I	GATNNNNATC	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	39
BseCI	ATCGAT	2 cut(s)	507, 951
BseDI	CCNNGG	2 cut(s)	38, 315
BseGI	GGATG	5 cut(s)	10, 17, 178, 280, 578
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	4 cut(s)	272, 463, 763, 782
BseMII	CTCAG	3 cut(s)	96, 735, 789
BseNI	ACTGG	2 cut(s)	859, 963
BseXI	GCAGC	1 cut(s)	813
Bsh1285I	CGRYCG	1 cut(s)	951
BshNI	GGYRCC	2 cut(s)	274, 920
BshVI	ATCGAT	2 cut(s)	507, 951
BsiEI	CGRYCG	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
BspCNI	CTCAG	3 cut(s)	95, 736, 788
BspDI	ATCGAT	2 cut(s)	507, 951
BspEI	TCCGGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	276, 922
BspPI	GGATC	3 cut(s)	5, 137, 947
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	2 cut(s)	274, 920
BsrDI	GCAATG	4 cut(s)	272, 463, 763, 782
BsrI	ACTGG	2 cut(s)	859, 963
BssECI	CCNNGG	2 cut(s)	38, 315
BssMI	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	7 cut(s)	274, 319, 349, 488, 523, 553, 698
Bst6I	CTCTTC	1 cut(s)	816
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	82, 744, 775
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	5 cut(s)	10, 17, 178, 280, 578
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	6 cut(s)	13, 127, 145, 539, 951, 955
BstMBI	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
BstMCI	CGRYCG	1 cut(s)	951
BstNI	CCWGG	1 cut(s)	39
BstPAI	GACNNNNGTC	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	813
BstX2I	RGATCY	2 cut(s)	124, 536
BstYI	RGATCY	2 cut(s)	124, 536
Bsu15I	ATCGAT	2 cut(s)	507, 951
BsuTUI	ATCGAT	2 cut(s)	507, 951
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	776
BtsCI	GGATG	5 cut(s)	10, 17, 178, 280, 578
BtsIMutI	CAGTG	1 cut(s)	882
Cac8I	GCNNGC	1 cut(s)	683
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	99
ClaI	ATCGAT	2 cut(s)	507, 951
Csp6I	GTAC	3 cut(s)	213, 275, 772
CviAII	CATG	4 cut(s)	302, 424, 500, 583
CviJI	RGCY	8 cut(s)	300, 398, 498, 517, 614, 826, 845, 962
CviKI_1	RGCY	8 cut(s)	300, 398, 498, 517, 614, 826, 845, 962
CviQI	GTAC	3 cut(s)	213, 275, 772
DdeI	CTNAG	3 cut(s)	82, 744, 775
DpnI	GATC	6 cut(s)	12, 126, 144, 538, 950, 954
DpnII	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	3 cut(s)	141, 384, 606
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	505
FaeI	CATG	4 cut(s)	305, 427, 503, 586
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	4 cut(s)	301, 423, 499, 582
Fnu4HI	GCNGC	1 cut(s)	827
FokI	GGATG	5 cut(s)	4, 17, 185, 267, 565
Fsp4HI	GCNGC	1 cut(s)	827
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	469
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	1 cut(s)	827
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	4 cut(s)	305, 427, 503, 586
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	5 cut(s)	217, 593, 740, 746, 887
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	1 cut(s)	875
Hpy166II	GTNNAC	2 cut(s)	772, 908
Hpy188I	TCNGA	4 cut(s)	598, 727, 745, 778
Hpy188III	TCNNGA	4 cut(s)	386, 542, 737, 914
Hpy8I	GTNNAC	2 cut(s)	772, 908
HpyCH4III	ACNGT	7 cut(s)	274, 319, 349, 488, 523, 553, 698
HpyCH4V	TGCA	3 cut(s)	270, 572, 813
HpyF3I	CTNAG	3 cut(s)	82, 744, 775
Hsp92II	CATG	4 cut(s)	305, 427, 503, 586
HspAI	GCGC	1 cut(s)	468
Kpn2I	TCCGGA	1 cut(s)	541
KpnI	GGTACC	1 cut(s)	278
Kzo9I	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	2 cut(s)	262, 460
LpnPI	CCDG	9 cut(s)	24, 51, 387, 555, 600, 609, 840, 843, 846
Lsp1109I	GCAGC	1 cut(s)	813
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	42, 319, 488
MalI	GATC	6 cut(s)	12, 126, 144, 538, 950, 954
MboI	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
MboII	GAAGA	5 cut(s)	134, 363, 567, 833, 867
MflI	RGATCY	2 cut(s)	124, 536
MluCI	AATT	4 cut(s)	190, 429, 654, 689
MlyI	GAGTC	1 cut(s)	755
MroI	TCCGGA	1 cut(s)	541
MseI	TTAA	6 cut(s)	108, 245, 351, 473, 558, 897
MslI	CAYNNNNRTG	3 cut(s)	285, 300, 498
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
NlaIII	CATG	4 cut(s)	305, 427, 503, 586
NlaIV	GGNNCC	2 cut(s)	276, 922
NsbI	TGCGCA	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	816
PfeI	GAWTC	4 cut(s)	217, 593, 740, 887
PkrI	GCNGC	1 cut(s)	828
Ple19I	CGATCG	1 cut(s)	951
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PpuMI	RGGWCCY	1 cut(s)	99
PshAI	GACNNNNGTC	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	276, 922
PspPI	GGNCC	1 cut(s)	99
PspPPI	RGGWCCY	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	124, 536
PvuI	CGATCG	1 cut(s)	951
RsaI	GTAC	3 cut(s)	214, 276, 773
RsaNI	GTAC	3 cut(s)	213, 275, 772
RseI	CAYNNNNRTG	3 cut(s)	285, 300, 498
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	6 cut(s)	108, 245, 351, 473, 558, 897
SatI	GCNGC	1 cut(s)	827
Sau3AI	GATC	6 cut(s)	10, 124, 142, 536, 948, 952
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	9 cut(s)	40, 63, 101, 365, 400, 406, 569, 628, 828
SfaNI	GCATC	1 cut(s)	581
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	3 cut(s)	285, 300, 498
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	4 cut(s)	190, 429, 654, 689
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	7 cut(s)	274, 319, 349, 488, 523, 553, 698
TaqI	TCGA	2 cut(s)	507, 951
TasI	AATT	4 cut(s)	190, 429, 654, 689
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	4 cut(s)	217, 593, 740, 887
Tru1I	TTAA	6 cut(s)	108, 245, 351, 473, 558, 897
Tru9I	TTAA	6 cut(s)	108, 245, 351, 473, 558, 897
TscAI	CASTG	1 cut(s)	889
TseI	GCWGC	1 cut(s)	826
TspDTI	ATGAA	6 cut(s)	201, 221, 318, 363, 567, 619
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	889
VpaK11BI	GGWCC	1 cut(s)	99
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.