Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005816.1

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

52486 .. 53432

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005816.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgactctctacggtagaattcaggctattcaggaagaatcgcaacaattctccaatcctaacgaagtagttcgtctagaatccaatgaacaacaaggcaaccaagttgctgaaaaattggcttatgttagtgcttctaatactaatgtttcttggtgggatactcaagtgctcaggctgcctattgccgaaatttgtcccgtcacacgaaatttcggcacacacaaccacgccgacgcctccactctaatcctgccggcgctgtcgatcagaaatgtgggccagctcgccgtggatctcttagtcgcgtcgacgaaggctgagagagtcgggtttctggatagtccgtatgtccttccatgtgttggcaacgatgcatatggccctgttcctcaaggcccccttgctcttcctcttgaagcttatgaatcgtcttcttatggaatggctttaatccagcaaaggtcacccgttgttaaggtatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

162

Amino Acids

17.72

Weight (kDa)

4.92

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	2 cut(s)	311, 483
AccII	CGCG	1 cut(s)	308
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	18, 192, 211
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	419
AluBI	AGCT	2 cut(s)	286, 422
AluI	AGCT	2 cut(s)	286, 422
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	3 cut(s)	280, 382, 397
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	3 cut(s)	18, 192, 211
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	280, 383, 398
AsuHPI	GGTGA	1 cut(s)	459
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	275
BciVI	GTATCC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	77, 487
BfoI	RGCGCY	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
BmgT120I	GGNCC	3 cut(s)	280, 383, 398
BmiI	GGNNCC	1 cut(s)	400
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	150, 378
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	187, 312
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	3 cut(s)	282, 384, 399
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	282, 384, 399
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	267, 295
BspANI	GGCC	3 cut(s)	282, 384, 399
BspCNI	CTCAG	2 cut(s)	186, 313
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	2 cut(s)	267, 295
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	258, 284, 288
BstDEI	CTNAG	3 cut(s)	173, 301, 321
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	2 cut(s)	270, 298
BstMBI	GATC	2 cut(s)	267, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	465
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BstZ17I	GTATAC	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	282, 384, 399
BtgI	CCRYGG	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	258, 284, 288
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	280, 383, 398
CseI	GACGC	2 cut(s)	245, 297
CviAII	CATG	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	173, 301, 321
DpnI	GATC	2 cut(s)	269, 297
DpnII	GATC	2 cut(s)	267, 295
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	379
FaeI	CATG	1 cut(s)	363
FaiI	YATR	8 cut(s)	126, 351, 361, 379, 381, 426, 441, 484
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	359
FauNDI	CATATG	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	311, 483
Fnu4HI	GCNGC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	77, 487
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	282, 384, 399
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	2 cut(s)	245, 297
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	363
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	5 cut(s)	4, 38, 80, 327, 428
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	459
Hpy166II	GTNNAC	2 cut(s)	312, 484
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	4 cut(s)	32, 77, 338, 416
Hpy8I	GTNNAC	2 cut(s)	312, 484
Hpy99I	CGWCG	3 cut(s)	239, 313, 316
HpyAV	CCTTC	2 cut(s)	310, 365
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	3 cut(s)	173, 301, 321
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	363
HspAI	GCGC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	267, 295
LguI	GCTCTTC	1 cut(s)	414
LpnPI	CCDG	9 cut(s)	8, 17, 160, 266, 270, 296, 323, 399, 470
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	77, 487
MaeIII	GTNAC	2 cut(s)	202, 465
MalI	GATC	2 cut(s)	269, 297
MboI	GATC	2 cut(s)	267, 295
MboII	GAAGA	3 cut(s)	47, 401, 426
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	18, 47, 116, 192, 211
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	3 cut(s)	250, 402, 423
Mph1103I	ATGCAT	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	2 cut(s)	452, 477
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	178
NaeI	GCCGGC	1 cut(s)	258
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	267, 295
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	363
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	202, 465
NsiI	ATGCAT	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	414
PdiI	GCCGGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	38, 80, 428
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	3 cut(s)	280, 383, 398
PsuI	RGATCY	1 cut(s)	295
SalI	GTCGAC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	452, 477
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	2 cut(s)	267, 295
Sau96I	GGNCC	3 cut(s)	280, 383, 398
SchI	GAGTC	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	288, 424, 467, 483
SfaNI	GCATC	1 cut(s)	364
SgrDI	CGTCGACG	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	165, 393
SmoI	CTYRAG	2 cut(s)	165, 393
Sse9I	AATT	5 cut(s)	18, 47, 116, 192, 211
SspMI	CTAG	2 cut(s)	77, 487
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	266, 311
TasI	AATT	5 cut(s)	18, 47, 116, 192, 211
TfiI	GAWTC	3 cut(s)	38, 80, 428
Tru1I	TTAA	2 cut(s)	452, 477
Tru9I	TTAA	2 cut(s)	452, 477
TseFI	GTSAC	2 cut(s)	202, 465
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	2 cut(s)	202, 465
TspDTI	ATGAA	2 cut(s)	102, 441
TspGWI	ACGGA	1 cut(s)	336
Van91I	CCANNNNNTGG	1 cut(s)	365
XapI	RAATTY	3 cut(s)	18, 192, 211
XbaI	TCTAGA	1 cut(s)	76
XmiI	GTMKAC	2 cut(s)	311, 483
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	77, 487
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.