Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

79155191 .. 79155685

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGGCCAAGTACCAAAATGGATGTGGAACACAAGCAGAGGGTCTTTGGAGTTCTTGGACATTTCTCATAACCGCCTTTCAGGCTTTGACCAGCCTCCGGTTGTCCTTCTCTGGGATATACCATTTGTGCTGGATCTTTCGTTCAACAGGCTTAGTGGTCCATTGTTGGTACCTTCGTCGTCACGATCCATGATGGAATTCTATCACATTTCAAACAACAAATTAACTGGAGAAATTTCACCTTTGATTTGTAATGCGAGTCTTCTTATTTCCCTTGATGTGTCAAATAACCATTTGAGTGGCATGCTTCCCCGGTGTCTCGGAAACTTCAGTAGTCGTCTTGAAGTTTTAAGTGTTGGAAACAACTATTTTCATGGCACTCTTCCTCATTTATGCCCCACCAATGGAAGCGATTTGGCAGTGATTGATGTCAGTCGTAACCAACTGCAGGGGAAATTACCGAGGTCATTGGGAAATTGTTCCCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

164

Amino Acids

18.11

Weight (kDa)

6.49

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	144, 183
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	2 cut(s)	200, 237
AcuI	CTGAAG	1 cut(s)	316
AfaI	GTAC	2 cut(s)	15, 174
AfiI	CCNNNNNNNGG	4 cut(s)	100, 115, 407, 451
AgsI	TTSAA	3 cut(s)	148, 216, 347
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	144, 183
AoxI	GGCC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	200, 237
Asp700I	GAANNNNTTC	1 cut(s)	481
Asp718I	GGTACC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BalI	TGGCCA	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	257
BccI	CCATC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	449
BglI	GCCNNNNNGGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	314, 464
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 115, 407, 451
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	314, 464
BseGI	GGATG	2 cut(s)	10, 30
BseLI	CCNNNNNNNGG	4 cut(s)	100, 115, 407, 451
BseNI	ACTGG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	101, 316
BslI	CCNNNNNNNGG	4 cut(s)	100, 115, 407, 451
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	136, 188
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	2 cut(s)	144, 183
BspT107I	GGYRCC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	314, 464
BssMI	GATC	2 cut(s)	136, 188
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	10, 30
BstKTI	GATC	2 cut(s)	139, 191
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	136, 188
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	10, 30
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	14, 173
CviAII	CATG	3 cut(s)	193, 307, 377
CviJI	RGCY	4 cut(s)	9, 87, 97, 154
CviKI_1	RGCY	4 cut(s)	9, 87, 97, 154
CviQI	GTAC	2 cut(s)	14, 173
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	138, 190
DpnII	GATC	2 cut(s)	136, 188
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	196, 310, 380
FaiI	YATR	6 cut(s)	72, 122, 194, 308, 378, 397
FatI	CATG	3 cut(s)	192, 306, 376
FokI	GGATG	2 cut(s)	17, 37
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	101, 316
Hin1II	CATG	3 cut(s)	196, 310, 380
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	101, 316
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	2 cut(s)	186, 344
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	119, 186
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	196, 310, 380
KpnI	GGTACC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	136, 188
LpnPI	CCDG	9 cut(s)	69, 100, 107, 114, 119, 136, 216, 329, 437
MaeIII	GTNAC	2 cut(s)	183, 440
MalI	GATC	2 cut(s)	138, 190
MboI	GATC	2 cut(s)	136, 188
MboII	GAAGA	2 cut(s)	257, 377
MflI	RGATCY	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	5 cut(s)	200, 224, 237, 458, 478
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	35, 108, 399, 459
Mox20I	TGGCCA	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	2 cut(s)	227, 353
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	9
MspI	CCGG	2 cut(s)	101, 316
MspR9I	CCNGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	136, 188
NlaIII	CATG	3 cut(s)	196, 310, 380
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	481
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	15, 174
RsaNI	GTAC	2 cut(s)	14, 173
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	227, 353
Sau3AI	GATC	2 cut(s)	136, 188
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	3 cut(s)	178, 247, 470
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	300
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	5 cut(s)	200, 224, 237, 458, 478
SsiI	CCGC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	314
TasI	AATT	5 cut(s)	200, 224, 237, 458, 478
Tru1I	TTAA	2 cut(s)	227, 353
Tru9I	TTAA	2 cut(s)	227, 353
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	200, 237
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.