Rh6AG113800

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002770
Physical Location & Seq
Forward (+)
17030500 .. 17035326
4827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG113800.1

Sequence Viewer

Length: 672 bp
ATGGAATTCATTCCCGAAGAAGGCACACACAACCACGCCGACGCCTCCACTCTAATCCTGCCGGCGTTGTCGATCGGAAATGTGGGCCAGCTCGCCGTGGATCTCTTAGTCGCGTCGACGAAGGCGGAGAGAGTCGGGTTTCTGGATAGTCCGTATGTCCTTCCATGTGTTGGCAACGATGCATATGGGCCTGTTCCTCAAGGCCACCTTGCTCTTCCTCTTGAAGCTTATGAATCGGCTTCTAATGGAATGGCTTTAATCCAGCAAAGGTCACCTGTTGTTAAGGGTAGGATGATTGAGTTTGCTAAGACGTTGGCTGATTATGTTGCTGCGAGTGGGAAGAAGCATGTGATTGTGCTTTCGAGCTTGGACTTTGGGAGGTGGCAGAGAATTGATATGTCAAGTGGTTCCCAGATGCATTACCTATCTAGTAGCAATGCCGATGGAACAGATGACTACTGCGAAAAGCTTGGGTGGAAAAGACTTCAGGATTATAACCCCAATCAGAGGTCATGGAAGTATCTTAACACATTAGCTGATGGCAATGCCATGCCAGAGGACAGCTTACCTTTTGAAGGTGAATTGGAAGAAGAAGAATACTACCACCCAAGCTTGCCTTTTGCAGCTCTCTTTTCTTCCTTCAAGGTATTCTTTTTGAATTATACCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

223

Amino Acids

24.68

Weight (kDa)

4.8

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 18 - 131 1.3e-21 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 4 cut(s) 20, 170, 507, 575
AgsI TTSAA 4 cut(s) 224, 575, 643, 658
AluBI AGCT 8 cut(s) 91, 227, 366, 469, 536, 564, 612, 626
AluI AGCT 8 cut(s) 91, 227, 366, 469, 536, 564, 612, 626
AlwI GGATC 1 cut(s) 108
AoxI GGCC 3 cut(s) 85, 188, 202
ApeKI GCWGC 2 cut(s) 329, 623
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 85, 188
AsuHPI GGTGA 2 cut(s) 264, 590
BbvI GCAGC 2 cut(s) 316, 635
BccI CCATC 2 cut(s) 437, 533
BceAI ACGGC 1 cut(s) 80
BfaI CTAG 1 cut(s) 429
BisI GCNGC 2 cut(s) 330, 624
BlsI GCNGC 2 cut(s) 331, 625
BmgT120I GGNCC 2 cut(s) 85, 188
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 2 cut(s) 169, 405
BpuEI CTTGAG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 170, 507, 575
Bse118I RCCGGY 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 442, 550
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 4 cut(s) 20, 170, 507, 575
BseMI GCAATG 2 cut(s) 442, 550
BseXI GCAGC 2 cut(s) 316, 635
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 87, 190, 204
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 4 cut(s) 20, 170, 507, 575
BsnI GGCC 3 cut(s) 87, 190, 204
Bsp143I GATC 2 cut(s) 72, 100
BspACI CCGC 1 cut(s) 125
BspANI GGCC 3 cut(s) 87, 190, 204
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 442, 550
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 72, 100
BssNI GRCGYC 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 63, 89, 93, 614
BstDEI CTNAG 2 cut(s) 106, 306
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 2 cut(s) 75, 103
BstMBI GATC 2 cut(s) 72, 100
BstMCI CGRYCG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 270
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 316, 635
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 87, 190, 204
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 297
Cac8I GCNNGC 4 cut(s) 63, 89, 93, 614
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 85, 188
CseI GACGC 2 cut(s) 50, 102
CviAII CATG 4 cut(s) 165, 347, 513, 550
DdeI CTNAG 2 cut(s) 106, 306
DpnI GATC 2 cut(s) 74, 102
DpnII GATC 2 cut(s) 72, 100
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO65I GGTNACC 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 5
EcoT22I ATGCAT 2 cut(s) 184, 420
FaeI CATG 4 cut(s) 168, 350, 516, 553
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 601, 633, 635, 667
FatI CATG 4 cut(s) 164, 346, 512, 549
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 2 cut(s) 330, 624
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 2 cut(s) 330, 624
FspBI CTAG 1 cut(s) 429
GluI GCNGC 2 cut(s) 330, 624
HaeIII GGCC 3 cut(s) 87, 190, 204
HapII CCGG 1 cut(s) 62
HgaI GACGC 2 cut(s) 50, 102
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 168, 350, 516, 553
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 3 cut(s) 225, 467, 610
HinfI GANTC 2 cut(s) 132, 233
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 264, 590
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 77, 507
Hpy188III TCNNGA 4 cut(s) 14, 143, 221, 488
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 3 cut(s) 44, 118, 121
HpyAV CCTTC 5 cut(s) 14, 115, 170, 569, 649
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 182, 418, 623
HpyF3I CTNAG 2 cut(s) 106, 306
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 168, 350, 516, 553
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 72, 100
LguI GCTCTTC 1 cut(s) 219
Lsp1109I GCAGC 2 cut(s) 316, 635
LweI GCATC 2 cut(s) 169, 405
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 74, 102
MboI GATC 2 cut(s) 72, 100
MboII GAAGA 7 cut(s) 29, 206, 352, 599, 602, 605, 627
MflI RGATCY 1 cut(s) 100
MluCI AATT 4 cut(s) 5, 390, 581, 658
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 6 cut(s) 55, 207, 228, 372, 501, 550
Mph1103I ATGCAT 2 cut(s) 184, 420
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 3 cut(s) 257, 282, 525
MspI CCGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 113
NaeI GCCGGC 1 cut(s) 63
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 72, 100
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 4 cut(s) 168, 350, 516, 553
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 184, 420
NspI RCATGY 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 2 cut(s) 331, 625
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 495
PspEI GGTNACC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 2 cut(s) 85, 188
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 75
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 257, 282, 525
SatI GCNGC 2 cut(s) 330, 624
Sau3AI GATC 2 cut(s) 72, 100
Sau96I GGNCC 2 cut(s) 85, 188
SchI GAGTC 1 cut(s) 141
SfaNI GCATC 2 cut(s) 169, 405
SgrDI CGTCGACG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 4 cut(s) 5, 390, 581, 658
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 429
TaiI ACGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 71, 116, 362
TasI AATT 4 cut(s) 5, 390, 581, 658
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 257, 282, 525
Tru9I TTAA 3 cut(s) 257, 282, 525
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 329, 623
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 429
Zsp2I ATGCAT 2 cut(s) 184, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.