Rorug05G0594200

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002770
Physical Location & Seq
Forward (+)
79224733 .. 79233823
9091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0594200.1

Sequence Viewer

Length: 1281 bp
ATGTTGGCAATGTTCTGGGCTGAATGGATGGAAACGAATATGAGCGTTTTTGAATATTGTGAAGGGTGGGAGTTATCTACCTTCAGGGTTGAATTGCCTTCAAATGGGCTTTCTTTGCCACCGTGGTCGTCCAGTTTTGGTCCTCGGACTACGTTATCCAATGGAATTGTGTATGAGACGGACACTGAGCCCCTTGGTCCAGCTACATATTATGTGACTGACACAAACAGATGGGGAGTTAGCAATGTCGGTCTTAACACACGCTGCATCATATTGACTGGGACCAACAATCCACAGCATACAATATCCACTTCATCTCCAATCGGAAGTACTTCAGACCCTACGCTATTTCAGAGTGCAAGGATCTCTGCTTCATCACTCAGATACTATGGCTTGGGTCTTGAGAATGGAAACTATACCGTGACGCTTGAATTTGCAGAACAAGCTATCCTAGATACTCCTACAAGAAAAAGTCTTGGAAGACGTGTGTTTGATATATATCCAGATTTTGATATACGAAAGGAGACAAATAGGACATCTTTGCTAGCTATTGAAAAGGTATACGAGGCTCAGGTGGTTTCAGAGAATTACCATGAAATCCATTTCTTCTGGGCTGGAAAGGGGACTTGCTGTATACCAGAGGAGGGTACATATGGACCTCTTATTTCAGCCATCAGTGCTGCACCTGGTAAATGGGTATCTTGCACCGGAATATGCTATGCGCCTATGCGTGGACACTTGACAGAGAAGACCGATGTGTTTGCCTATGCTGTTGTCATTATAGAAATTGTCAGCGGTAGGCCAAATTCTGATCCAAGTTTGGAAGGCGATATGGTTTATCTTCTTAAATTGGCTTGGAACTTGCATGAAAACAAACGTGAAGTTGATCTAGTAGACTTTAGATTATCTGAATTCAATAAGGAAGAAGCAAGACGAATTATCAACATAGGACTTTTGTGCACTCAGTCATCACCAATGCTACGACCACCTATGTCTCGCGTGATCGGAATGCTTGCAGGAGATATTGAAGTGACTCCTGCTATTTCAAAGCCTGGTTACTTGACAGACTGGAGATTTGATGATGCAACTACTATCACCAGCCAAACGAAATTTGGTGATGGGAGTACTGGCAACAGTCTAGGAACTGATATGTCAACTAGAGGAACTGACTTCAGCTTTTACAACTCGTCGGCAAGTACAAGCGTGATGGAGGATGCAGGGCAATTACCTTCAAATGCCACTCTTCCCATACTCGATATTACGAATGGTGGTGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

426

Amino Acids

46.97

Weight (kDa)

4.83

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 49 - 225 7.9e-27 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 561, 634, 894
AccII CGCG 1 cut(s) 999
AciI CCGC 1 cut(s) 795
AclWI GGATC 2 cut(s) 371, 806
AcsI RAATTY 4 cut(s) 431, 805, 911, 1109
AcuI CTGAAG 3 cut(s) 67, 318, 1156
AfaI GTAC 4 cut(s) 331, 649, 1126, 1198
AfiI CCNNNNNNNGG 3 cut(s) 104, 644, 731
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 9 cut(s) 53, 92, 102, 431, 554, 916, 1028, 1047, 1233
AjiI CACGTC 1 cut(s) 485
AjnI CCWGG 2 cut(s) 685, 1051
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
AluBI AGCT 4 cut(s) 203, 446, 548, 1176
AluI AGCT 4 cut(s) 203, 446, 548, 1176
Alw21I GWGCWC 1 cut(s) 962
Alw26I GTCTC 3 cut(s) 170, 518, 999
Alw44I GTGCAC 1 cut(s) 958
AlwI GGATC 2 cut(s) 371, 806
AoxI GGCC 1 cut(s) 800
ApaLI GTGCAC 1 cut(s) 958
ApeKI GCWGC 2 cut(s) 264, 680
ApoI RAATTY 4 cut(s) 431, 805, 911, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 1058, 1090
Asp700I GAANNNNTTC 1 cut(s) 331
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 4 cut(s) 140, 197, 282, 656
AsuHPI GGTGA 3 cut(s) 963, 1087, 1127
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 4 cut(s) 140, 197, 282, 656
BaeGI GKGCMC 1 cut(s) 962
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 2 cut(s) 487, 755
Bbv12I GWGCWC 1 cut(s) 962
BbvI GCAGC 2 cut(s) 251, 667
BccI CCATC 5 cut(s) 22, 225, 680, 1112, 1201
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 2 cut(s) 687, 1053
BcoDI GTCTC 3 cut(s) 170, 518, 999
BfaI CTAG 5 cut(s) 452, 545, 890, 1139, 1158
BisI GCNGC 2 cut(s) 265, 681
BlsI GCNGC 2 cut(s) 266, 682
BmcAI AGTACT 2 cut(s) 331, 1126
Bme1390I CCNGG 2 cut(s) 687, 1053
Bme18I GGWCC 4 cut(s) 140, 197, 282, 656
BmgBI CACGTC 1 cut(s) 485
BmgT120I GGNCC 4 cut(s) 140, 197, 282, 656
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 2 cut(s) 687, 1053
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 276, 1072, 1204
BmtI GCTAGC 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 487, 755
BpmI CTGGAG 1 cut(s) 1090
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 122, 143, 193
BsaWI WCCGGW 1 cut(s) 707
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 644, 731
Bse1I ACTGG 4 cut(s) 132, 283, 1073, 1132
Bse3DI GCAATG 2 cut(s) 15, 250
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 687, 1053
BseDI CCNNGG 3 cut(s) 122, 143, 193
BseGI GGATG 2 cut(s) 33, 1219
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 3 cut(s) 104, 644, 731
BseMI GCAATG 2 cut(s) 15, 250
BseMII CTCAG 4 cut(s) 177, 394, 584, 977
BseNI ACTGG 4 cut(s) 132, 283, 1073, 1132
BseRI GAGGAG 1 cut(s) 656
BseSI GKGCMC 1 cut(s) 962
BseXI GCAGC 2 cut(s) 251, 667
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 1 cut(s) 999
BshFI GGCC 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 962
BsiSI CCGG 1 cut(s) 708
BslFI GGGAC 2 cut(s) 295, 637
BslI CCNNNNNNNGG 3 cut(s) 104, 644, 731
BsmAI GTCTC 3 cut(s) 170, 518, 999
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 295, 637
BsmI GAATGC 1 cut(s) 1014
BsnI GGCC 1 cut(s) 802
Bsp1286I GDGCHC 2 cut(s) 192, 962
Bsp143I GATC 4 cut(s) 363, 811, 886, 1002
BspACI CCGC 1 cut(s) 795
BspANI GGCC 1 cut(s) 802
BspCNI CTCAG 4 cut(s) 178, 393, 583, 976
BspFNI CGCG 1 cut(s) 999
BspLI GGNNCC 1 cut(s) 283
BspOI GCTAGC 1 cut(s) 548
BspPI GGATC 2 cut(s) 371, 806
BsrDI GCAATG 2 cut(s) 15, 250
BsrI ACTGG 4 cut(s) 132, 283, 1073, 1132
BssECI CCNNGG 3 cut(s) 122, 143, 193
BssMI GATC 4 cut(s) 363, 811, 886, 1002
BssNAI GTATAC 2 cut(s) 562, 635
BssT1I CCWWGG 1 cut(s) 193
Bst1107I GTATAC 2 cut(s) 562, 635
Bst2UI CCWGG 2 cut(s) 687, 1053
Bst4CI ACNGT 3 cut(s) 123, 421, 1136
Bst6I CTCTTC 1 cut(s) 1248
BstC8I GCNNGC 2 cut(s) 546, 1014
BstDEI CTNAG 4 cut(s) 186, 380, 570, 963
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 33, 1219
BstFNI CGCG 1 cut(s) 999
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 4 cut(s) 366, 814, 889, 1005
BstMAI GTCTC 3 cut(s) 170, 518, 999
BstMBI GATC 4 cut(s) 363, 811, 886, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 115, 443, 677
BstNI CCWGG 2 cut(s) 687, 1053
BstSCI CCNGG 2 cut(s) 685, 1051
BstSLI GKGCMC 1 cut(s) 962
BstUI CGCG 1 cut(s) 999
BstV1I GCAGC 2 cut(s) 251, 667
BstV2I GAAGAC 2 cut(s) 487, 755
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZ17I GTATAC 2 cut(s) 562, 635
BsuRI GGCC 1 cut(s) 802
BtgI CCRYGG 1 cut(s) 122
BtrI CACGTC 1 cut(s) 485
BtsCI GGATG 2 cut(s) 33, 1219
BtsIMutI CAGTG 2 cut(s) 183, 682
Cac8I GCNNGC 2 cut(s) 546, 1014
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 4 cut(s) 140, 197, 282, 656
CseI GACGC 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 4 cut(s) 330, 648, 1125, 1197
CviAII CATG 2 cut(s) 593, 866
CviQI GTAC 4 cut(s) 330, 648, 1125, 1197
DdeI CTNAG 4 cut(s) 186, 380, 570, 963
DpnI GATC 4 cut(s) 365, 813, 888, 1004
DpnII GATC 4 cut(s) 363, 811, 886, 1002
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 4 cut(s) 140, 197, 282, 656
Eco57I CTGAAG 3 cut(s) 67, 318, 1156
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 685, 1051
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 596, 869
FaqI GGGAC 2 cut(s) 295, 637
FatI CATG 2 cut(s) 592, 865
FauNDI CATATG 1 cut(s) 652
FblI GTMKAC 3 cut(s) 561, 634, 894
Fnu4HI GCNGC 2 cut(s) 265, 681
FokI GGATG 2 cut(s) 40, 1226
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 265, 681
FspBI CTAG 5 cut(s) 452, 545, 890, 1139, 1158
GlaI GCGC 1 cut(s) 723
GluI GCNGC 2 cut(s) 265, 681
GsuI CTGGAG 1 cut(s) 1090
HaeIII GGCC 1 cut(s) 802
HapII CCGG 1 cut(s) 708
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 724
Hin1II CATG 2 cut(s) 596, 869
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 1155
HindII GTYRAC 1 cut(s) 1155
HinfI GANTC 1 cut(s) 1033
HpaII CCGG 1 cut(s) 708
HphI GGTGA 3 cut(s) 963, 1087, 1127
Hpy166II GTNNAC 6 cut(s) 562, 635, 734, 895, 960, 1155
Hpy188I TCNGA 9 cut(s) 147, 326, 337, 354, 383, 583, 811, 910, 1007
Hpy188III TCNNGA 2 cut(s) 401, 503
Hpy8I GTNNAC 6 cut(s) 562, 635, 734, 895, 960, 1155
Hpy99I CGWCG 1 cut(s) 1192
HpyAV CCTTC 5 cut(s) 56, 91, 108, 818, 1239
HpyCH4III ACNGT 3 cut(s) 123, 421, 1136
HpyCH4IV ACGT 3 cut(s) 152, 484, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 443, 677
HpyF3I CTNAG 4 cut(s) 186, 380, 570, 963
HpySE526I ACGT 3 cut(s) 152, 484, 877
Hsp92II CATG 2 cut(s) 596, 869
HspAI GCGC 1 cut(s) 722
Kzo9I GATC 4 cut(s) 363, 811, 886, 1002
Lsp1109I GCAGC 2 cut(s) 251, 667
LweI GCATC 3 cut(s) 276, 1072, 1204
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 5 cut(s) 452, 545, 890, 1139, 1158
MaeII ACGT 3 cut(s) 152, 484, 877
MaeIII GTNAC 4 cut(s) 214, 421, 1030, 1055
MalI GATC 4 cut(s) 365, 813, 888, 1004
MboI GATC 4 cut(s) 363, 811, 886, 1002
MboII GAAGA 6 cut(s) 492, 598, 760, 833, 935, 1235
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 192, 962
MlyI GAGTC 1 cut(s) 1027
MnlI CCTC 7 cut(s) 153, 559, 634, 637, 669, 1154, 1204
MroXI GAANNNNTTC 1 cut(s) 331
MseI TTAA 2 cut(s) 255, 846
MspA1I CMGCKG 1 cut(s) 795
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 2 cut(s) 687, 1053
Mva1269I GAATGC 1 cut(s) 1014
MvaI CCWGG 2 cut(s) 687, 1053
MvnI CGCG 1 cut(s) 999
MwoI GCNNNNNNNGC 3 cut(s) 115, 443, 677
NdeI CATATG 1 cut(s) 652
NdeII GATC 4 cut(s) 363, 811, 886, 1002
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 2 cut(s) 596, 869
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 3 cut(s) 214, 421, 1030
PctI GAATGC 1 cut(s) 1014
PdmI GAANNNNTTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 266, 682
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
Psp6I CCWGG 2 cut(s) 685, 1051
PspGI CCWGG 2 cut(s) 685, 1051
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 4 cut(s) 140, 197, 282, 656
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 4 cut(s) 331, 649, 1126, 1198
RsaNI GTAC 4 cut(s) 330, 648, 1125, 1197
SaqAI TTAA 2 cut(s) 255, 846
SatI GCNGC 2 cut(s) 265, 681
Sau3AI GATC 4 cut(s) 363, 811, 886, 1002
Sau96I GGNCC 4 cut(s) 140, 197, 282, 656
ScaI AGTACT 2 cut(s) 331, 1126
SchI GAGTC 1 cut(s) 1027
ScrFI CCNGG 2 cut(s) 687, 1053
SduI GDGCHC 2 cut(s) 192, 962
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 3 cut(s) 276, 1072, 1204
SinI GGWCC 4 cut(s) 140, 197, 282, 656
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SsiI CCGC 1 cut(s) 795
SspI AATATT 1 cut(s) 56
SspMI CTAG 5 cut(s) 452, 545, 890, 1139, 1158
StyD4I CCNGG 2 cut(s) 685, 1051
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 3 cut(s) 123, 421, 1136
TaiI ACGT 3 cut(s) 155, 487, 880
TaqI TCGA 1 cut(s) 1254
TaqII GACCGA 2 cut(s) 239, 767
TatI WGTACW 3 cut(s) 329, 1124, 1196
Tru1I TTAA 2 cut(s) 255, 846
Tru9I TTAA 2 cut(s) 255, 846
TscAI CASTG 2 cut(s) 190, 682
TseFI GTSAC 3 cut(s) 214, 421, 1030
TseI GCWGC 2 cut(s) 264, 680
Tsp45I GTSAC 3 cut(s) 214, 421, 1030
TspDTI ATGAA 4 cut(s) 303, 363, 609, 882
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 190, 682
VneI GTGCAC 1 cut(s) 958
VpaK11BI GGWCC 4 cut(s) 140, 197, 282, 656
XapI RAATTY 4 cut(s) 431, 805, 911, 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 1109
XmiI GTMKAC 3 cut(s) 561, 634, 894
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 5 cut(s) 452, 545, 890, 1139, 1158
ZrmI AGTACT 2 cut(s) 331, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.