Rh6AG113500

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002770
Physical Location & Seq
Forward (+)
16989073 .. 16993373
4301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG113500.1

Sequence Viewer

Length: 372 bp
ATGGAACTCATTCCCGAAGAAGGTACACACAACCACGCCGACTCCTCCACTCTAATCCTGCCGGCGCTGTCGATCGGAAATGTGGGCCAGCTCGCCGTGGATCTCTTAGTCGCGTCGACGAAGGCTGAGAGAGTCGGGTTTCTGGATAGTCCGTATGTCCTTCCATGTGTTGGCAACGATGCATATGGCCCTGTTCCTCAAGGCCACCTTGCTCTTCCTCTTGAAGATGGGAGGTCATTACCTGTTCAGAAGCTCAATTTAGTGTCACCTCCAGCAATGTCGTTTTGTAATCCCTTGTTCCTCATTATCGGCTTTGAATACACAGATGGGATCATGAGCCAAGATATATCAGTGTTAGCTTATTCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

123

Amino Acids

13.06

Weight (kDa)

4.32

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 18 - 65 3.6e-11 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 113
AclWI GGATC 2 cut(s) 108, 338
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 20, 170
AgsI TTSAA 2 cut(s) 224, 317
AluBI AGCT 3 cut(s) 91, 253, 359
AluI AGCT 3 cut(s) 91, 253, 359
AlwI GGATC 2 cut(s) 108, 338
AoxI GGCC 3 cut(s) 85, 187, 202
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 85, 188
AsuHPI GGTGA 1 cut(s) 258
BccI CCATC 2 cut(s) 221, 320
BceAI ACGGC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 85, 188
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 170
Bse118I RCCGGY 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 20, 170
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 87, 189, 204
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 20, 170
BsnI GGCC 3 cut(s) 87, 189, 204
Bsp143I GATC 3 cut(s) 72, 100, 330
BspANI GGCC 3 cut(s) 87, 189, 204
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 333
BspPI GGATC 2 cut(s) 108, 338
BspQI GCTCTTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 72, 100, 330
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 63, 89, 93
BstDEI CTNAG 2 cut(s) 106, 126
BstDSI CCRYGG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 75, 103, 333
BstMBI GATC 3 cut(s) 72, 100, 330
BstMCI CGRYCG 1 cut(s) 75
BstUI CGCG 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 87, 189, 204
BtgI CCRYGG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 357, 372
Cac8I GCNNGC 3 cut(s) 63, 89, 93
CciI TCATGA 1 cut(s) 333
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 85, 188
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 24
CviAII CATG 2 cut(s) 165, 334
CviJI RGCY 9 cut(s) 87, 91, 125, 189, 204, 253, 312, 339, 359
CviKI_1 RGCY 9 cut(s) 87, 91, 125, 189, 204, 253, 312, 339, 359
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 106, 126
DpnI GATC 3 cut(s) 74, 102, 332
DpnII GATC 3 cut(s) 72, 100, 330
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 2 cut(s) 168, 337
FaiI YATR 6 cut(s) 156, 166, 184, 186, 335, 347
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 2 cut(s) 164, 333
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 116
GlaI GCGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 3 cut(s) 87, 189, 204
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 168, 337
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 2 cut(s) 41, 132
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 26, 117
Hpy188I TCNGA 2 cut(s) 77, 249
Hpy188III TCNNGA 4 cut(s) 14, 143, 221, 334
Hpy8I GTNNAC 2 cut(s) 26, 117
Hpy99I CGWCG 2 cut(s) 118, 121
HpyAV CCTTC 3 cut(s) 14, 115, 170
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 106, 126
Hsp92II CATG 2 cut(s) 168, 337
HspAI GCGC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 72, 100, 330
LguI GCTCTTC 1 cut(s) 219
LpnPI CCDG 7 cut(s) 71, 75, 101, 128, 204, 255, 285
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 264
MalI GATC 3 cut(s) 74, 102, 332
MboI GATC 3 cut(s) 72, 100, 330
MboII GAAGA 3 cut(s) 29, 206, 236
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 256
MlyI GAGTC 2 cut(s) 35, 141
MnlI CCTC 6 cut(s) 55, 207, 225, 228, 279, 311
Mph1103I ATGCAT 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 9
MspI CCGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 113
NaeI GCCGGC 1 cut(s) 63
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 72, 100, 330
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 2 cut(s) 168, 337
NmuCI GTSAC 1 cut(s) 264
NsiI ATGCAT 1 cut(s) 184
PagI TCATGA 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 170
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 35, 140
PpsI GAGTC 2 cut(s) 35, 140
PspPI GGNCC 2 cut(s) 85, 188
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 219
Sau3AI GATC 3 cut(s) 72, 100, 330
Sau96I GGNCC 2 cut(s) 85, 188
SchI GAGTC 2 cut(s) 35, 141
SetI ASST 8 cut(s) 25, 93, 210, 236, 244, 255, 271, 361
SfaNI GCATC 1 cut(s) 169
SgrDI CGTCGACG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 1 cut(s) 256
TaqI TCGA 2 cut(s) 71, 116
TasI AATT 1 cut(s) 256
TscAI CASTG 2 cut(s) 357, 372
TseFI GTSAC 1 cut(s) 264
Tsp45I GTSAC 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 357, 372
Van91I CCANNNNNTGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.