RLG00000014472

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002770
Physical Location & Seq
Reverse (-)
53580093 .. 53580628
536 bp
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UTR
Exon/CDS
Intron
RLM00000014472

Sequence Viewer

Length: 324 bp
ATGGGAAATGTGGGCCAGCTCGCCGTGGATCTCTTAGTCGCGTCGACGAAGGCGGAGAGAGTCGGGTTTCTGGATAGTCCGTATGTCCTTCCATGTGTTGGCAACGATGCATATGGCCCTGTTCCTCAAGGCCACCTTGCTCTTGCAGCTCTTCCTCTTGAAGCTTATGAATCGGCTTCTAATGGAATGGCTTTAATCCAGCAAAGGTCATCTGTTGTTAAGTTGGCTGATTATGTTGCTGCGAGTGGGAAGAAGCACGTGATTGTGCTTTCGAGCTTGGACTTTGGGAGGTGGCAGAGAATTGATATGTCAAGGTATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

108

Amino Acids

11.49

Weight (kDa)

7.89

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 1 - 98 9.2e-13 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 41
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 36
AcvI CACGTG 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 4 cut(s) 19, 149, 164, 276
AluI AGCT 4 cut(s) 19, 149, 164, 276
AlwI GGATC 1 cut(s) 36
AoxI GGCC 3 cut(s) 13, 115, 130
ApeKI GCWGC 2 cut(s) 146, 239
AspS9I GGNCC 2 cut(s) 13, 116
BbrPI CACGTG 1 cut(s) 259
BbvI GCAGC 2 cut(s) 158, 226
BceAI ACGGC 1 cut(s) 8
BisI GCNGC 2 cut(s) 147, 240
BlsI GCNGC 2 cut(s) 148, 241
BmgT120I GGNCC 2 cut(s) 13, 116
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 158, 226
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 3 cut(s) 15, 117, 132
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 3 cut(s) 15, 117, 132
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 53
BspANI GGCC 3 cut(s) 15, 117, 132
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 36
BspQI GCTCTTC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 17, 21
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 158, 226
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 3 cut(s) 15, 117, 132
BtgI CCRYGG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 17, 21
Cfr13I GGNCC 2 cut(s) 13, 116
CseI GACGC 1 cut(s) 30
CviAII CATG 1 cut(s) 93
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 68
Eco72I CACGTG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 112
FaeI CATG 1 cut(s) 96
FaiI YATR 8 cut(s) 84, 94, 112, 114, 168, 234, 308, 318
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 1 cut(s) 92
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 147, 240
Fsp4HI GCNGC 2 cut(s) 147, 240
GluI GCNGC 2 cut(s) 147, 240
HaeIII GGCC 3 cut(s) 15, 117, 132
HgaI GACGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 96
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 2 cut(s) 60, 170
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 71, 158
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 46, 49
HpyAV CCTTC 2 cut(s) 43, 98
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 110, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 29, 56, 132, 212
Lsp1109I GCAGC 2 cut(s) 158, 226
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 258
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 143, 262
MflI RGATCY 1 cut(s) 28
MluCI AATT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 3 cut(s) 135, 165, 282
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 2 cut(s) 194, 219
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeI CATATG 1 cut(s) 112
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 2 cut(s) 148, 241
PleI GAGTC 1 cut(s) 68
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 259
PspCI CACGTG 1 cut(s) 259
PspPI GGNCC 2 cut(s) 13, 116
PsuI RGATCY 1 cut(s) 28
SalI GTCGAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 194, 219
SatI GCNGC 2 cut(s) 147, 240
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 13, 116
SchI GAGTC 1 cut(s) 69
SetI ASST 9 cut(s) 21, 138, 151, 166, 209, 261, 278, 293, 317
SfaNI GCATC 1 cut(s) 97
SgrDI CGTCGACG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 53
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 44, 272
TasI AATT 1 cut(s) 300
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 194, 219
Tru9I TTAA 2 cut(s) 194, 219
TseI GCWGC 2 cut(s) 146, 239
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 69
Van91I CCANNNNNTGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.