Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003337.1

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

70741 .. 73890

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003337.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggaattcattcccgaagaaggcacacacaaccacgccgacgcctccactctaatcctgccggcgttgtcgatcggaaatgtgggccagctcgccgtggacctcttagtcgcgtcgacgaaggcggagagagtcgggtttctggatagtccgtatgtccttccatgtgttggcaacgatgcatatgggcctgttcctcaaggccaccttgctcttcctcttgaagcttatgaatcggcttctaatggaatggctttaatccagcaaaggtcacctgtagttaagggtaggatgattgagtttgctaagaagttggctgattatgttgctgcaagcgggaagaagcatgtgattgtgctttcgagcttggactttgggaggtggcagagaattgatatgtcaagtggttcccagatgcattacctgtctagtagcaatgccgatggtaccgatgattactgcgaaaagcttgggtggaaaagacttcaggattataaccccaatcagaggtcatggaagtatcttaacacattagctgatggcaatgccatgccagaggacagcttaccttttgaaggtgaattgcaagaagaagaatactactacccaagcttgccttttgcagctctcttttcttccttcaaggcaaaaggattgaaggtcacctgtattttatgctactgctcagaaggagacaacacacctgatgctttccatttggctgaagcagcatgcaaacttctgggtgtgagtcccagtaatttccatggcaacactgataattggcttattccaatttcttggaagactgtgtatggaccacccgcagatatgtctctcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

281

Amino Acids

30.83

Weight (kDa)

4.96

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	125, 336, 825
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	470, 744
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	4 cut(s)	20, 170, 507, 575
AgsI	TTSAA	4 cut(s)	224, 575, 643, 658
AluBI	AGCT	8 cut(s)	91, 227, 366, 469, 536, 564, 612, 626
AluI	AGCT	8 cut(s)	91, 227, 366, 469, 536, 564, 612, 626
Alw26I	GTCTC	2 cut(s)	687, 840
AoxI	GGCC	3 cut(s)	85, 188, 202
ApeKI	GCWGC	3 cut(s)	329, 623, 728
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	446
AspS9I	GGNCC	4 cut(s)	85, 100, 188, 818
AsuHPI	GGTGA	3 cut(s)	264, 590, 655
AvaII	GGWCC	2 cut(s)	100, 818
BanI	GGYRCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	3 cut(s)	316, 635, 740
BccI	CCATC	2 cut(s)	437, 533
BceAI	ACGGC	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	687, 840
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	3 cut(s)	330, 624, 729
BlsI	GCNGC	3 cut(s)	331, 625, 730
Bme18I	GGWCC	2 cut(s)	100, 818
BmgT120I	GGNCC	4 cut(s)	85, 100, 188, 818
BmiI	GGNNCC	2 cut(s)	409, 448
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	169, 405, 697
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	96, 766
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 170, 507, 575
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	2 cut(s)	442, 550
BseDI	CCNNGG	2 cut(s)	96, 766
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	4 cut(s)	20, 170, 507, 575
BseMI	GCAATG	2 cut(s)	442, 550
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	756
BseXI	GCAGC	3 cut(s)	316, 635, 740
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	87, 190, 204
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	4 cut(s)	20, 170, 507, 575
BsmAI	GTCTC	2 cut(s)	687, 840
BsmFI	GGGAC	1 cut(s)	738
BsnI	GGCC	3 cut(s)	87, 190, 204
Bsp143I	GATC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	766
BspACI	CCGC	3 cut(s)	125, 336, 825
BspANI	GGCC	3 cut(s)	87, 190, 204
BspCNI	CTCAG	1 cut(s)	698
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	409, 448
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	2 cut(s)	442, 550
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	756
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	96, 766
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	766
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	6 cut(s)	63, 89, 93, 334, 614, 733
BstDEI	CTNAG	3 cut(s)	106, 306, 685
BstDSI	CCRYGG	2 cut(s)	96, 766
BstEII	GGTNACC	2 cut(s)	270, 661
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	687, 840
BstMBI	GATC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	728
BstNSI	RCATGY	2 cut(s)	350, 735
BstPI	GGTNACC	2 cut(s)	270, 661
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	316, 635, 740
BstV2I	GAAGAC	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	87, 190, 204
BtgI	CCRYGG	2 cut(s)	96, 766
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	774
Cac8I	GCNNGC	6 cut(s)	63, 89, 93, 334, 614, 733
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	4 cut(s)	85, 100, 188, 818
CseI	GACGC	2 cut(s)	50, 102
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	6 cut(s)	165, 347, 513, 550, 732, 767
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	3 cut(s)	106, 306, 685
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	766
Eco47I	GGWCC	2 cut(s)	100, 818
Eco57I	CTGAAG	2 cut(s)	470, 744
Eco91I	GGTNACC	2 cut(s)	270, 661
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO65I	GGTNACC	2 cut(s)	270, 661
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	766
EcoT22I	ATGCAT	2 cut(s)	184, 420
ErhI	CCWWGG	1 cut(s)	766
FaeI	CATG	6 cut(s)	168, 350, 516, 553, 735, 770
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 601, 633
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	6 cut(s)	164, 346, 512, 549, 731, 766
FauI	CCCGC	2 cut(s)	329, 832
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	330, 624, 729
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	330, 624, 729
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	3 cut(s)	330, 624, 729
HaeIII	GGCC	3 cut(s)	87, 190, 204
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	2 cut(s)	50, 102
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	168, 350, 516, 553, 735, 770
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	3 cut(s)	225, 467, 610
HinfI	GANTC	3 cut(s)	132, 233, 751
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	264, 590, 655
Hpy166II	GTNNAC	2 cut(s)	100, 117
Hpy188I	TCNGA	3 cut(s)	77, 507, 688
Hpy188III	TCNNGA	4 cut(s)	14, 143, 221, 488
Hpy8I	GTNNAC	2 cut(s)	100, 117
Hpy99I	CGWCG	3 cut(s)	44, 118, 121
HpyAV	CCTTC	7 cut(s)	14, 115, 170, 569, 649, 652, 683
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4V	TGCA	6 cut(s)	182, 332, 418, 586, 623, 735
HpyF10VI	GCNNNNNNNGC	1 cut(s)	728
HpyF3I	CTNAG	3 cut(s)	106, 306, 685
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	6 cut(s)	168, 350, 516, 553, 735, 770
KpnI	GGTACC	1 cut(s)	450
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	219
Lsp1109I	GCAGC	3 cut(s)	316, 635, 740
LweI	GCATC	3 cut(s)	169, 405, 697
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	270, 661
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	7 cut(s)	29, 206, 352, 602, 605, 627, 817
MluCI	AATT	6 cut(s)	5, 390, 581, 760, 781, 795
MlyI	GAGTC	2 cut(s)	141, 760
MnlI	CCTC	7 cut(s)	55, 113, 207, 228, 372, 501, 550
Mph1103I	ATGCAT	2 cut(s)	184, 420
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	4 cut(s)	257, 282, 525, 844
MspI	CCGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	728
NaeI	GCCGGC	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	766
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	1 cut(s)	72
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	6 cut(s)	168, 350, 516, 553, 735, 770
NlaIV	GGNNCC	2 cut(s)	409, 448
NmuCI	GTSAC	2 cut(s)	270, 661
NsiI	ATGCAT	2 cut(s)	184, 420
NspI	RCATGY	2 cut(s)	350, 735
PaeI	GCATGC	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	331, 625, 730
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	140, 759
PpsI	GAGTC	2 cut(s)	140, 759
PsiI	TTATAA	1 cut(s)	495
PspEI	GGTNACC	2 cut(s)	270, 661
PspN4I	GGNNCC	2 cut(s)	409, 448
PspPI	GGNCC	4 cut(s)	85, 100, 188, 818
PvuI	CGATCG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	257, 282, 525, 844
SatI	GCNGC	3 cut(s)	330, 624, 729
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	4 cut(s)	85, 100, 188, 818
SchI	GAGTC	2 cut(s)	141, 760
SfaNI	GCATC	3 cut(s)	169, 405, 697
SfcI	CTRYAG	1 cut(s)	276
SgrDI	CGTCGACG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	100, 818
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	6 cut(s)	5, 390, 581, 760, 781, 795
SsiI	CCGC	3 cut(s)	125, 336, 825
SspMI	CTAG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	766
TaaI	ACNGT	1 cut(s)	811
TaqI	TCGA	3 cut(s)	71, 116, 362
TasI	AATT	6 cut(s)	5, 390, 581, 760, 781, 795
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	4 cut(s)	257, 282, 525, 844
Tru9I	TTAA	4 cut(s)	257, 282, 525, 844
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	2 cut(s)	270, 661
TseI	GCWGC	3 cut(s)	329, 623, 728
Tsp45I	GTSAC	2 cut(s)	270, 661
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	781
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	100, 818
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	2 cut(s)	350, 735
XmiI	GTMKAC	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	2 cut(s)	184, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.