Rw6G009650

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002770
Physical Location & Seq
Forward (+)
16209050 .. 16211104
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009650.1

Sequence Viewer

Length: 537 bp
ATGACTCTCGACGGTAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGAAGTAGTTCCTCTGGAATCCAATGAACAACAAGGCAACCAAGTTGCTGACAAATTGGCTTATAAAAAGCTCTGCAAAACCACTCAACTTGCTCGAGAACTCAGACGCTCACTGAAAATGGAACTCATTCCCGAAGAAGGCACACACAACCACGCCGACTCCTCCACTCTAATCCTGCCGGCGCTGTCGATCGGAAATGTGGGCCAGCTAGCCGTTGATCTCTTAGTCGCGTCGACGAAGGCTGAGAGAGTCGGGTTTCTGGATAGTCCGTATGTCCTTCCATGTGTTGGCAACGATGCATATGGCCCTGTTCCTCAAGGCCACCTTGCTCTTCCTCTTGAAGTGGTTCCCAGATGCATTACCTGTCTAGCAGCAATGCCGATGGAAAAGATGATTACTGCGAACAGCTTGGGTGGAAAAGACTTTAGGATTATAACCCCAATTAGAGGTCATGGAAGTATCTTAACACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

178

Amino Acids

19.33

Weight (kDa)

5.94

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 78 - 123 1.3e-10 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 126, 497
AccB7I CCANNNNNTGG 1 cut(s) 350
AccI GTMKAC 1 cut(s) 296
AccII CGCG 1 cut(s) 293
AfiI CCNNNNNNNGG 3 cut(s) 200, 350, 509
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 3 cut(s) 133, 271, 471
AluI AGCT 3 cut(s) 133, 271, 471
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 3 cut(s) 265, 367, 382
ApeKI GCWGC 2 cut(s) 43, 434
Asp700I GAANNNNTTC 3 cut(s) 69, 189, 408
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 265, 368
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 156
BbvI GCAGC 2 cut(s) 55, 446
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 23
BfaI CTAG 2 cut(s) 272, 431
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 2 cut(s) 44, 435
BlsI GCNGC 2 cut(s) 45, 436
Bme1390I CCNGG 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 265, 368
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 349, 407
BmtI GCTAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 350, 509
Bse118I RCCGGY 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 23
BseLI CCNNNNNNNGG 3 cut(s) 200, 350, 509
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 178, 297
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 55, 446
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 267, 369, 384
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 200, 350, 509
BsnI GGCC 3 cut(s) 267, 369, 384
BsoBI CYCGRG 1 cut(s) 156
Bsp143I GATC 2 cut(s) 252, 280
BspANI GGCC 3 cut(s) 267, 369, 384
BspCNI CTCAG 2 cut(s) 177, 298
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 411
BspOI GCTAGC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 241
BssMI GATC 2 cut(s) 252, 280
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 243, 269, 273
BstDEI CTNAG 3 cut(s) 164, 286, 306
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 2 cut(s) 255, 283
BstMBI GATC 2 cut(s) 252, 280
BstMCI CGRYCG 1 cut(s) 255
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 55, 446
BsuRI GGCC 3 cut(s) 267, 369, 384
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 243, 269, 273
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 265, 368
CseI GACGC 2 cut(s) 177, 282
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 2 cut(s) 345, 515
DdeI CTNAG 3 cut(s) 164, 286, 306
DpnI GATC 2 cut(s) 254, 282
DpnII GATC 2 cut(s) 252, 280
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 21
EcoT22I ATGCAT 2 cut(s) 364, 422
FaeI CATG 2 cut(s) 348, 518
FaiI YATR 7 cut(s) 126, 336, 346, 364, 366, 497, 516
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 2 cut(s) 344, 514
FauNDI CATATG 1 cut(s) 364
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 2 cut(s) 44, 435
Fsp4HI GCNGC 2 cut(s) 44, 435
FspBI CTAG 2 cut(s) 272, 431
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 44, 435
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 3 cut(s) 267, 369, 384
HapII CCGG 1 cut(s) 242
HgaI GACGC 2 cut(s) 177, 282
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 348, 518
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 6 cut(s) 4, 18, 38, 80, 221, 312
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 167, 257
Hpy188III TCNNGA 7 cut(s) 8, 32, 77, 158, 194, 323, 401
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 3 cut(s) 14, 298, 301
HpyAV CCTTC 3 cut(s) 194, 295, 350
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 138, 362, 420
HpyF3I CTNAG 3 cut(s) 164, 286, 306
Hsp92II CATG 2 cut(s) 348, 518
HspAI GCGC 1 cut(s) 245
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 252, 280
LguI GCTCTTC 1 cut(s) 399
Lsp1109I GCAGC 2 cut(s) 55, 446
LweI GCATC 2 cut(s) 349, 407
MaeI CTAG 2 cut(s) 272, 431
MalI GATC 2 cut(s) 254, 282
MboI GATC 2 cut(s) 252, 280
MboII GAAGA 3 cut(s) 47, 209, 386
MluCI AATT 3 cut(s) 47, 116, 504
MlyI GAGTC 2 cut(s) 215, 321
MnlI CCTC 5 cut(s) 84, 235, 387, 408, 503
Mph1103I ATGCAT 2 cut(s) 364, 422
MroNI GCCGGC 1 cut(s) 241
MroXI GAANNNNTTC 3 cut(s) 69, 189, 408
MseI TTAA 1 cut(s) 527
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 293
NaeI GCCGGC 1 cut(s) 243
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 252, 280
NgoMIV GCCGGC 1 cut(s) 241
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 2 cut(s) 348, 518
NlaIV GGNNCC 1 cut(s) 411
NsiI ATGCAT 2 cut(s) 364, 422
PaeR7I CTCGAG 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 243
PdmI GAANNNNTTC 3 cut(s) 69, 189, 408
PfeI GAWTC 3 cut(s) 18, 38, 80
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 2 cut(s) 45, 436
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 2 cut(s) 215, 320
PpsI GAGTC 2 cut(s) 215, 320
PsiI TTATAA 2 cut(s) 126, 497
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 2 cut(s) 265, 368
PvuI CGATCG 1 cut(s) 255
SalI GTCGAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 2 cut(s) 44, 435
Sau3AI GATC 2 cut(s) 252, 280
Sau96I GGNCC 2 cut(s) 265, 368
SchI GAGTC 2 cut(s) 215, 321
ScrFI CCNGG 1 cut(s) 23
SetI ASST 6 cut(s) 135, 273, 390, 428, 473, 514
SfaNI GCATC 2 cut(s) 349, 407
Sfr274I CTCGAG 1 cut(s) 156
SgrDI CGTCGACG 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 156, 378
SmoI CTYRAG 2 cut(s) 156, 378
Sse9I AATT 3 cut(s) 47, 116, 504
SspMI CTAG 2 cut(s) 272, 431
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 4 cut(s) 9, 157, 251, 296
TasI AATT 3 cut(s) 47, 116, 504
TfiI GAWTC 3 cut(s) 18, 38, 80
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 43, 434
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 296
XmnI GAANNNNTTC 3 cut(s) 69, 189, 408
XspI CTAG 2 cut(s) 272, 431
Zsp2I ATGCAT 2 cut(s) 364, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.