RchiOBHm_Chr6g0260971

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002770
Physical Location & Seq
Forward (+)
15959837 .. 15963183
3347 bp
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UTR
Exon/CDS
Intron
PRQ23404

Sequence Viewer

Length: 753 bp
ATGGAACTCATTCCCGAAGAAGGCACACACAACCACGCCGACTCCTCCACTCTAATCCTGCTGGCGCTGTCGATCGGAAATGTGGGCCAGCTCGCCGTGGATCTCTTAGTCGCGTCGACGAAGGCTGAGAGAGTCGGGTTTCTGGATAGTCCGTATGTCCTTCCATGTGTTGGCAACGATGCATATGGCCCTGTTCCTCAAGGCCACCTTGCTCTTCCTCTTGAAGCTTATGAATCGTCTTCTAATGGAATGGCTTTAATCCAGCAAAGGTCACCTGTTGTTAAGGGCAGAGAATTGATATGTCAAGCTTGTGGTTCCCAGATGCATTACCTGTCTAGCAGCAATGCCGATGGAAAAGATGATTACTGCGAACAGCTTGGGTGGAAAAGACTTCAGGATTATAACCCCAATCAGAGGTCATGGAAGTATCTTAACACATTAGCTGATGGCAATGCCATGCCAGAGGACAGCTTACCTTTTGAAGGTGAATTGGAAGAAGAAGAATACTACTACCCAAGCTTGCCTTTTTCAGCTCTCTTTTCTTCCTTAAAGGCAAAAGGATTGAAGGTCGCCTGTTTATTATGCTACTGCTCAGAAGGAGACAATACACCTGATGCTTTCCATTTGGCTGAAGCAGCATGCAAACTTCTGGGTGTGAGTCCCAGTAATTTCCATTGCAACACTGATAATTGGTTTATTCCAATTTCTTGGAAGACTGTGTATGGACCACCCGCAGACATGTCTCTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

250

Amino Acids

27.38

Weight (kDa)

4.6

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 23 - 100 2.3e-12 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 732
AclWI GGATC 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 377, 651
AfiI CCNNNNNNNGG 4 cut(s) 20, 170, 414, 482
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 3 cut(s) 224, 482, 565
AluBI AGCT 8 cut(s) 91, 227, 308, 376, 443, 471, 519, 533
AluI AGCT 8 cut(s) 91, 227, 308, 376, 443, 471, 519, 533
Alw26I GTCTC 2 cut(s) 594, 747
AlwI GGATC 1 cut(s) 108
AoxI GGCC 3 cut(s) 85, 187, 202
ApeKI GCWGC 2 cut(s) 339, 635
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 85, 188, 725
AsuHPI GGTGA 2 cut(s) 264, 497
AvaII GGWCC 1 cut(s) 725
BbsI GAAGAC 2 cut(s) 231, 719
BbvI GCAGC 2 cut(s) 351, 647
BccI CCATC 2 cut(s) 344, 440
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 594, 747
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 2 cut(s) 340, 636
BlsI GCNGC 2 cut(s) 341, 637
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 3 cut(s) 85, 188, 725
BmiI GGNNCC 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 3 cut(s) 169, 312, 604
BmuI ACTGGG 1 cut(s) 657
BpiI GAAGAC 2 cut(s) 231, 719
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 170, 414, 482
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 3 cut(s) 349, 457, 673
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 4 cut(s) 20, 170, 414, 482
BseMI GCAATG 3 cut(s) 349, 457, 673
BseMII CTCAG 2 cut(s) 117, 606
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 2 cut(s) 351, 647
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 87, 189, 204
BsiEI CGRYCG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 4 cut(s) 20, 170, 414, 482
BsmAI GTCTC 2 cut(s) 594, 747
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 3 cut(s) 87, 189, 204
Bsp143I GATC 2 cut(s) 72, 100
BspACI CCGC 1 cut(s) 732
BspANI GGCC 3 cut(s) 87, 189, 204
BspCNI CTCAG 2 cut(s) 118, 605
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 219
BsrDI GCAATG 3 cut(s) 349, 457, 673
BsrI ACTGG 1 cut(s) 663
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 72, 100
Bst4CI ACNGT 1 cut(s) 718
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 5 cut(s) 63, 89, 93, 521, 640
BstDEI CTNAG 3 cut(s) 106, 126, 592
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 75, 103
BstMAI GTCTC 2 cut(s) 594, 747
BstMBI GATC 2 cut(s) 72, 100
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNSI RCATGY 2 cut(s) 642, 742
BstPI GGTNACC 1 cut(s) 270
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 351, 647
BstV2I GAAGAC 2 cut(s) 231, 719
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 708
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 87, 189, 204
BtgI CCRYGG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 5 cut(s) 63, 89, 93, 521, 640
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 3 cut(s) 85, 188, 725
CseI GACGC 1 cut(s) 102
CviAII CATG 5 cut(s) 165, 420, 457, 639, 739
DdeI CTNAG 3 cut(s) 106, 126, 592
DpnI GATC 2 cut(s) 74, 102
DpnII GATC 2 cut(s) 72, 100
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 377, 651
Eco91I GGTNACC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 480
EcoO65I GGTNACC 1 cut(s) 270
EcoT22I ATGCAT 2 cut(s) 184, 327
FaeI CATG 5 cut(s) 168, 423, 460, 642, 742
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 508, 540
FaqI GGGAC 1 cut(s) 645
FatI CATG 5 cut(s) 164, 419, 456, 638, 738
FauI CCCGC 1 cut(s) 739
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 2 cut(s) 340, 636
Fsp4HI GCNGC 2 cut(s) 340, 636
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 340, 636
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 3 cut(s) 87, 189, 204
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 67
Hin1II CATG 5 cut(s) 168, 423, 460, 642, 742
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 3 cut(s) 225, 306, 517
HinfI GANTC 4 cut(s) 41, 132, 233, 658
HphI GGTGA 2 cut(s) 264, 497
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 3 cut(s) 77, 414, 595
Hpy188III TCNNGA 4 cut(s) 14, 143, 221, 395
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 2 cut(s) 118, 121
HpyAV CCTTC 6 cut(s) 14, 115, 170, 476, 559, 590
HpyCH4III ACNGT 1 cut(s) 718
HpyCH4V TGCA 4 cut(s) 182, 325, 642, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 3 cut(s) 106, 126, 592
Hsp92II CATG 5 cut(s) 168, 423, 460, 642, 742
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 72, 100
LguI GCTCTTC 1 cut(s) 219
Lsp1109I GCAGC 2 cut(s) 351, 647
LweI GCATC 3 cut(s) 169, 312, 604
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 74, 102
MboI GATC 2 cut(s) 72, 100
MboII GAAGA 8 cut(s) 29, 206, 231, 506, 509, 512, 534, 724
MflI RGATCY 1 cut(s) 100
MluCI AATT 5 cut(s) 293, 488, 667, 688, 702
MlyI GAGTC 3 cut(s) 35, 141, 667
MnlI CCTC 5 cut(s) 55, 207, 228, 408, 457
Mph1103I ATGCAT 2 cut(s) 184, 327
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 5 cut(s) 257, 282, 432, 548, 751
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 635
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 72, 100
NlaIII CATG 5 cut(s) 168, 423, 460, 642, 742
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 184, 327
NspI RCATGY 2 cut(s) 642, 742
PaeI GCATGC 1 cut(s) 642
PciI ACATGT 1 cut(s) 738
PciSI GCTCTTC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 2 cut(s) 341, 637
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 3 cut(s) 35, 140, 666
PpsI GAGTC 3 cut(s) 35, 140, 666
PscI ACATGT 1 cut(s) 738
PsiI TTATAA 1 cut(s) 402
PspEI GGTNACC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 3 cut(s) 85, 188, 725
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 75
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 5 cut(s) 257, 282, 432, 548, 751
SatI GCNGC 2 cut(s) 340, 636
Sau3AI GATC 2 cut(s) 72, 100
Sau96I GGNCC 3 cut(s) 85, 188, 725
SchI GAGTC 3 cut(s) 35, 141, 667
SfaNI GCATC 3 cut(s) 169, 312, 604
SgrDI CGTCGACG 1 cut(s) 115
SinI GGWCC 1 cut(s) 725
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SphI GCATGC 1 cut(s) 642
Sse9I AATT 5 cut(s) 293, 488, 667, 688, 702
SsiI CCGC 1 cut(s) 732
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 718
TaqI TCGA 2 cut(s) 71, 116
TasI AATT 5 cut(s) 293, 488, 667, 688, 702
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 5 cut(s) 257, 282, 432, 548, 751
Tru9I TTAA 5 cut(s) 257, 282, 432, 548, 751
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 339, 635
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 480
XceI RCATGY 2 cut(s) 642, 742
XmiI GTMKAC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 2 cut(s) 184, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.