Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003337.1

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

32634 .. 33073

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003337.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atggaactcattcccgaagaaggtacacacaaccacgccgactcctccactctaatcctgccggcgctgtcgatcggaaatgtgggccagctcgccgtggatctcttagtcgcgtcgacgaaggctgagagagtcgggtttctggatagtccgtatgtccttccatgtgttggcaacgatgcatatggccctgttcctcaaggcccccttgctcttcctcttgaagcttatgaatcgtcttctaatggaatggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

85

Amino Acids

8.79

Weight (kDa)

4.14

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	1 cut(s)	113
AclWI	GGATC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	20, 170
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	2 cut(s)	91, 227
AluI	AGCT	2 cut(s)	91, 227
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	3 cut(s)	85, 187, 202
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	85, 188, 203
BbsI	GAAGAC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	68
BmgT120I	GGNCC	3 cut(s)	85, 188, 203
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 170
Bse118I	RCCGGY	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	20, 170
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	87, 189, 204
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	20, 170
BsnI	GGCC	3 cut(s)	87, 189, 204
Bsp143I	GATC	2 cut(s)	72, 100
BspANI	GGCC	3 cut(s)	87, 189, 204
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	72, 100
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	63, 89, 93
BstDEI	CTNAG	2 cut(s)	106, 126
BstDSI	CCRYGG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	75, 103
BstMBI	GATC	2 cut(s)	72, 100
BstMCI	CGRYCG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	87, 189, 204
BtgI	CCRYGG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	63, 89, 93
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	85, 188, 203
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	7 cut(s)	87, 91, 125, 189, 204, 227, 254
CviKI_1	RGCY	7 cut(s)	87, 91, 125, 189, 204, 227, 254
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	2 cut(s)	106, 126
DpnI	GATC	2 cut(s)	74, 102
DpnII	GATC	2 cut(s)	72, 100
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	184
FaeI	CATG	1 cut(s)	168
FaiI	YATR	5 cut(s)	156, 166, 184, 186, 231
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	116
GlaI	GCGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	87, 189, 204
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	3 cut(s)	41, 132, 233
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	26, 117
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	14, 143, 221
Hpy8I	GTNNAC	2 cut(s)	26, 117
Hpy99I	CGWCG	2 cut(s)	118, 121
HpyAV	CCTTC	3 cut(s)	14, 115, 170
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	106, 126
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	72, 100
LguI	GCTCTTC	1 cut(s)	219
LpnPI	CCDG	5 cut(s)	71, 75, 101, 128, 204
LweI	GCATC	1 cut(s)	169
MalI	GATC	2 cut(s)	74, 102
MboI	GATC	2 cut(s)	72, 100
MboII	GAAGA	3 cut(s)	29, 206, 231
MflI	RGATCY	1 cut(s)	100
MlyI	GAGTC	2 cut(s)	35, 141
MnlI	CCTC	3 cut(s)	55, 207, 228
Mph1103I	ATGCAT	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	9
MspI	CCGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	113
NaeI	GCCGGC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	72, 100
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	170
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	35, 140
PpsI	GAGTC	2 cut(s)	35, 140
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	85, 188, 203
PsuI	RGATCY	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	72, 100
Sau96I	GGNCC	3 cut(s)	85, 188, 203
SchI	GAGTC	2 cut(s)	35, 141
SetI	ASST	3 cut(s)	25, 93, 229
SfaNI	GCATC	1 cut(s)	169
SgrDI	CGTCGACG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
TaqI	TCGA	2 cut(s)	71, 116
TfiI	GAWTC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.