Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

79247704 .. 79253505

Gene Structure 5802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0594300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGACGGGGTTTTACATAGACGACTCACAGATTCCAGTTCCCGTTTATGCTCATATCTACAGTTACGACCACCCGGATGCCTGCAACTGGTGTATGTTTTCGGTCAGTCACTATAACGAAAACATATTGAGTGTTATGGGATACAAAAACGATACCTCTATCTGTGGTCAAGGTCTAACCAAACTTTTTACCGAAAAAGGAAACTATACTCTAAAAAATTGGTTATCATCACATTCGGATCAACTTATTTTGATTACAAATGGACCAAGGTTTGTTAGCTTCTCTACTCTGCCGAGGAAGCTTCTAAGGGGTGTTTTGTCTGGGATCATTTATATGTGGGTGGCAAACTTCAACCATGGATATGTGTCGGCCGAAAATATATATGTGGTCGGAGAAACTATATATGTGGTCGGAGAAACTGACTCTGAAATTGCCAAGTTAGGCCAAATGAGATCAGTTGATCTAGGGAATGTCGGTGAGAATGAGGAGGATACATGTGTGTACTCCATGAAGTCTTATCTGGATTTCGGATATTCCCAAAGGATCCCCCGTATGGTGAGTGTGCTTCCAGAGTCTGATCACAATGTCTCAATCTTAGTGGGTGGAATATTGGTAGGAGTGGCGGGTCCTTCTGGGGCTGGAAAGTTTGTGTTTACTGAAAAGATACTGATGGCAACTTATGGACAGTTTGAAGTCCCAAGCTCCCACATTGTGATCATTGAGGGCATCTATGCTTTGAGTGAAAAGTTGCGGCCTTTATTGGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

257

Amino Acids

28.58

Weight (kDa)

5.32

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	626, 754
AclWI	GGATC	4 cut(s)	249, 335, 541, 554
AcoI	YGGCCR	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	715
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	2 cut(s)	90, 556
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	355, 695
AluBI	AGCT	3 cut(s)	282, 304, 705
AluI	AGCT	3 cut(s)	282, 304, 705
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	4 cut(s)	249, 335, 541, 554
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	372, 445, 755
AspS9I	GGNCC	2 cut(s)	266, 629
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	491, 571
AvaII	GGWCC	2 cut(s)	266, 629
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BamHI	GGATCC	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	1 cut(s)	667
BciVI	GTATCC	2 cut(s)	137, 487
BclI	TGATCA	2 cut(s)	580, 717
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	61
BfuI	GTATCC	2 cut(s)	137, 487
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	266, 629
BmgT120I	GGNCC	2 cut(s)	266, 629
BmiI	GGNNCC	2 cut(s)	548, 630
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	70, 738
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	269, 296, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 556
Bse1I	ACTGG	2 cut(s)	38, 95
BseDI	CCNNGG	3 cut(s)	269, 296, 358
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	90, 556
BseNI	ACTGG	2 cut(s)	38, 95
BseRI	GAGGAG	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	3 cut(s)	374, 447, 757
BsiEI	CGRYCG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	2 cut(s)	90, 556
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	374, 447, 757
Bsp143I	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	2 cut(s)	626, 754
BspANI	GGCC	3 cut(s)	374, 447, 757
BspLI	GGNNCC	2 cut(s)	548, 630
BspPI	GGATC	4 cut(s)	249, 335, 541, 554
BsrI	ACTGG	2 cut(s)	38, 95
BssECI	CCNNGG	3 cut(s)	269, 296, 358
BssMI	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
BssT1I	CCWWGG	2 cut(s)	269, 358
Bst4CI	ACNGT	2 cut(s)	65, 690
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	308, 598
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	8 cut(s)	244, 330, 458, 466, 549, 583, 720, 769
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	546, 766
BstYI	RGATCY	2 cut(s)	546, 766
BstZI	CGGCCG	1 cut(s)	372
BsuI	GTATCC	2 cut(s)	137, 487
BsuRI	GGCC	3 cut(s)	374, 447, 757
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	266, 629
Csp6I	GTAC	1 cut(s)	505
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	3 cut(s)	359, 498, 511
CviJI	RGCY	7 cut(s)	282, 304, 374, 447, 641, 705, 757
CviKI_1	RGCY	7 cut(s)	282, 304, 374, 447, 641, 705, 757
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	2 cut(s)	308, 598
DpnI	GATC	8 cut(s)	243, 329, 457, 465, 548, 582, 719, 768
DpnII	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
DraIII	CACNNNGTG	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	372
EagI	CGGCCG	1 cut(s)	372
EclXI	CGGCCG	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	269, 358
Eco47I	GGWCC	2 cut(s)	266, 629
Eco52I	CGGCCG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	629
EcoT14I	CCWWGG	2 cut(s)	269, 358
ErhI	CCWWGG	2 cut(s)	269, 358
FaeI	CATG	3 cut(s)	362, 501, 514
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	3 cut(s)	358, 497, 510
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	2 cut(s)	580, 717
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	1 cut(s)	755
HaeIII	GGCC	3 cut(s)	374, 447, 757
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	362, 501, 514
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	26, 34, 425, 575
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	491, 571
Hpy166II	GTNNAC	2 cut(s)	505, 657
Hpy188I	TCNGA	6 cut(s)	241, 395, 416, 430, 533, 580
Hpy188III	TCNNGA	2 cut(s)	524, 572
Hpy8I	GTNNAC	2 cut(s)	505, 657
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	2 cut(s)	65, 690
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	308, 598
Hsp92II	CATG	3 cut(s)	362, 501, 514
Ksp22I	TGATCA	2 cut(s)	580, 717
Kzo9I	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
LmnI	GCTCC	1 cut(s)	710
LpnPI	CCDG	9 cut(s)	51, 76, 90, 97, 309, 509, 585, 621, 627
LweI	GCATC	2 cut(s)	70, 738
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	2 cut(s)	65, 110
MalI	GATC	8 cut(s)	243, 329, 457, 465, 548, 582, 719, 768
MboI	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	2 cut(s)	546, 766
MluCI	AATT	2 cut(s)	220, 432
MlyI	GAGTC	3 cut(s)	20, 419, 584
MmeI	TCCRAC	2 cut(s)	373, 394
MnlI	CCTC	5 cut(s)	169, 291, 481, 484, 718
MslI	CAYNNNNRTG	3 cut(s)	78, 335, 363
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	358
NdeII	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
NlaIII	CATG	3 cut(s)	362, 501, 514
NlaIV	GGNNCC	2 cut(s)	548, 630
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	501
PciI	ACATGT	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	3 cut(s)	20, 419, 583
PpsI	GAGTC	3 cut(s)	20, 419, 583
PpuMI	RGGWCCY	1 cut(s)	629
PscI	ACATGT	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	548, 630
PspPI	GGNCC	2 cut(s)	266, 629
PspPPI	RGGWCCY	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	546, 766
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	3 cut(s)	78, 335, 363
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	8 cut(s)	241, 327, 455, 463, 546, 580, 717, 766
Sau96I	GGNCC	2 cut(s)	266, 629
SchI	GAGTC	3 cut(s)	20, 419, 584
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	6 cut(s)	161, 178, 275, 284, 306, 707
SfaNI	GCATC	2 cut(s)	70, 738
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	266, 629
SmiMI	CAYNNNNRTG	3 cut(s)	78, 335, 363
Sse9I	AATT	2 cut(s)	220, 432
SsiI	CCGC	2 cut(s)	626, 754
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	269, 358
TaaI	ACNGT	2 cut(s)	65, 690
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	220, 432
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	17, 527
VpaK11BI	GGWCC	2 cut(s)	266, 629
XceI	RCATGY	1 cut(s)	501
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.