Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Reverse (-)

13990386 .. 13993554

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G110200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAATTCGTTCCTGAACAAGGCAAACGCGTCAACGGCGACTCTTCCACTCTGATCCTGCCGGCTTTGTCTATTGGAAATGTGGGGCAGCTTGCAGTAGACCTCTTAGTTGCGTCAACGAGAGCTGAGAGAATTGGGTATTTGGATACTCCCTATGTGCTTCCATGCGTTGGCAACGACGCATATGGGCCTGTTCCAAATGGCGAGCTTGCTCTCCCTCTTGAAGCTTATGATTCGTCTGCTAATGCAATGACTTTAATCCAACAAAGGTCTCCTGTTGTTAAGGGAAGGATGATTGAATTTGCTAAAAAATTGGCTGATTATGTTGCTGCTAGTGGAAAGAAGCATGTTGTCGTGCTCTCAAGCTTAGATTTTGGGAGGTGGCAGAGAGTTGATATGTCAAGTGGTTTGCAGACGCTTTACCTGTCTAGCACCAATTCAGATGGAACAGATGATTACTGTGAACAGCTTGGGTGGAAAAAACTGCAGGAATATAAACCCACTCAGAAGGCTTGGAAGTATCTCAGCGCATTAGCTGAAGGCAATGCCATACCAGAGAGCATCTTGCCCTTTGAAGGTGAACTAGAAGAAGAAGAATATTACTACCCGAGCTTGCCTTTTGCCGCACTCTTTTCTTGTCTCAAGGCCAAAGGATTGAAGGTCACATGCTTATTTTGCTACTGCTCAGAAGGGGACAACATACCTGATGCTTTCCATTTGGCTGAGGCAACATGCAAACTTCTGGACTTGAGTCCCAGTAACTTCCAGGGCAACAGCAATGATAAATGGGTTATTCCATTGTCTTGGAAGACTCTGTATGGACCACCGGCAGACATGTCTCTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

283

Amino Acids

30.99

Weight (kDa)

4.79

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	30
AciI	CCGC	1 cut(s)	624
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	5, 299
AcuI	CTGAAG	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	20, 170, 575
AflIII	ACRYGT	2 cut(s)	28, 834
AgsI	TTSAA	4 cut(s)	224, 299, 575, 658
AjnI	CCWGG	1 cut(s)	765
AluBI	AGCT	8 cut(s)	91, 125, 208, 227, 366, 469, 536, 612
AluI	AGCT	8 cut(s)	91, 125, 208, 227, 366, 469, 536, 612
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	276, 644, 843
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	607
AoxI	GGCC	2 cut(s)	188, 645
ApeKI	GCWGC	2 cut(s)	88, 329
ApoI	RAATTY	2 cut(s)	5, 299
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	188, 821
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	100, 316
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	767
BciVI	GTATCC	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	276, 644, 843
BfaI	CTAG	3 cut(s)	333, 429, 584
BfmI	CTRYAG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	89, 330, 624
BlsI	GCNGC	3 cut(s)	90, 331, 625
Bme1390I	CCNGG	1 cut(s)	767
Bme18I	GGWCC	1 cut(s)	821
BmeT110I	CYCGRG	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	188, 821
BmrFI	CCNGG	1 cut(s)	767
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	570, 697
BmuI	ACTGGG	1 cut(s)	750
BoxI	GACNNNNGTC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	815
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	3 cut(s)	346, 626, 769
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 170, 575
Bse118I	RCCGGY	2 cut(s)	61, 826
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	3 cut(s)	255, 550, 784
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	20, 170, 575
BseMI	GCAATG	3 cut(s)	255, 550, 784
BseMII	CTCAG	5 cut(s)	117, 518, 538, 699, 714
BseNI	ACTGG	1 cut(s)	756
BseXI	GCAGC	2 cut(s)	100, 316
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	190, 647
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	2 cut(s)	62, 827
BslFI	GGGAC	2 cut(s)	707, 738
BslI	CCNNNNNNNGG	3 cut(s)	20, 170, 575
BsmAI	GTCTC	3 cut(s)	276, 644, 843
BsmFI	GGGAC	2 cut(s)	707, 738
BsnI	GGCC	2 cut(s)	190, 647
Bso31I	GGTCTC	1 cut(s)	276
BsoBI	CYCGRG	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	2 cut(s)	190, 647
BspCNI	CTCAG	5 cut(s)	118, 517, 537, 698, 715
BspFNI	CGCG	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	3 cut(s)	255, 550, 784
BsrFI	RCCGGY	2 cut(s)	61, 826
BsrI	ACTGG	1 cut(s)	756
BssAI	RCCGGY	2 cut(s)	61, 826
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	5 cut(s)	63, 93, 206, 210, 614
BstDEI	CTNAG	7 cut(s)	106, 126, 367, 504, 524, 685, 723
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	3 cut(s)	276, 644, 843
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 675
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	4 cut(s)	350, 669, 735, 838
BstPAI	GACNNNNGTC	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	100, 316
BstV2I	GAAGAC	1 cut(s)	815
BstXI	CCANNNNNNTGG	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	190, 647
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	5 cut(s)	63, 93, 206, 210, 614
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	2 cut(s)	61, 826
Cfr13I	GGNCC	2 cut(s)	188, 821
CseI	GACGC	4 cut(s)	19, 102, 188, 424
CviAII	CATG	5 cut(s)	165, 347, 666, 732, 835
DdeI	CTNAG	7 cut(s)	106, 126, 367, 504, 524, 685, 723
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	765
FaeI	CATG	5 cut(s)	168, 350, 669, 735, 838
FaqI	GGGAC	2 cut(s)	707, 738
FatI	CATG	5 cut(s)	164, 346, 665, 731, 834
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	89, 330, 624
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	89, 330, 624
FspBI	CTAG	3 cut(s)	333, 429, 584
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	3 cut(s)	89, 330, 624
HaeIII	GGCC	2 cut(s)	190, 647
HapII	CCGG	2 cut(s)	62, 827
HgaI	GACGC	4 cut(s)	19, 102, 188, 424
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	168, 350, 669, 735, 838
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	2 cut(s)	34, 117
HindII	GTYRAC	2 cut(s)	34, 117
HindIII	AAGCTT	2 cut(s)	225, 364
HinfI	GANTC	4 cut(s)	41, 233, 751, 811
HpaII	CCGG	2 cut(s)	62, 827
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	5 cut(s)	34, 100, 117, 464, 581
Hpy188I	TCNGA	4 cut(s)	54, 442, 507, 688
Hpy188III	TCNNGA	3 cut(s)	14, 221, 743
Hpy8I	GTNNAC	5 cut(s)	34, 100, 117, 464, 581
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	6 cut(s)	282, 502, 533, 569, 652, 683
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4V	TGCA	5 cut(s)	95, 248, 412, 487, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 675
HpyF3I	CTNAG	7 cut(s)	106, 126, 367, 504, 524, 685, 723
Hsp92II	CATG	5 cut(s)	168, 350, 669, 735, 838
HspAI	GCGC	1 cut(s)	528
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	54
Lsp1109I	GCAGC	2 cut(s)	100, 316
LweI	GCATC	2 cut(s)	570, 697
MaeI	CTAG	3 cut(s)	333, 429, 584
MaeIII	GTNAC	2 cut(s)	661, 758
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	5 cut(s)	36, 599, 602, 605, 820
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	5 cut(s)	5, 132, 299, 311, 436
MluI	ACGCGT	1 cut(s)	28
MlyI	GAGTC	3 cut(s)	35, 760, 805
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	113, 228, 372, 718
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	257, 282
MspI	CCGG	2 cut(s)	62, 827
MspR9I	CCNGG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	36, 675
NaeI	GCCGGC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	1 cut(s)	54
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	5 cut(s)	168, 350, 669, 735, 838
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	4 cut(s)	350, 669, 735, 838
PciI	ACATGT	1 cut(s)	834
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	90, 331, 625
PleI	GAGTC	3 cut(s)	35, 759, 805
PpsI	GAGTC	3 cut(s)	35, 759, 805
PscI	ACATGT	1 cut(s)	834
PshAI	GACNNNNGTC	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PspPI	GGNCC	2 cut(s)	188, 821
PstI	CTGCAG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	257, 282
SatI	GCNGC	3 cut(s)	89, 330, 624
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	188, 821
SchI	GAGTC	3 cut(s)	35, 760, 805
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	570, 697
SfcI	CTRYAG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	821
SmlI	CTYRAG	3 cut(s)	361, 641, 748
SmoI	CTYRAG	3 cut(s)	361, 641, 748
Sse9I	AATT	5 cut(s)	5, 132, 299, 311, 436
SsiI	CCGC	1 cut(s)	624
SspI	AATATT	1 cut(s)	599
SspMI	CTAG	3 cut(s)	333, 429, 584
StyD4I	CCNGG	1 cut(s)	765
TaaI	ACNGT	1 cut(s)	461
TasI	AATT	5 cut(s)	5, 132, 299, 311, 436
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	257, 282
Tru9I	TTAA	2 cut(s)	257, 282
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	88, 329
Tsp45I	GTSAC	1 cut(s)	661
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	5, 299
XceI	RCATGY	4 cut(s)	350, 669, 735, 838
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	3 cut(s)	333, 429, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.