FvH4_5g27360

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002770
Physical Location & Seq
Reverse (-)
18610155 .. 18614330
4176 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27360.t1

Sequence Viewer

Length: 582 bp
ATGGAGTTCATTCCTGAACAAGGCAAAAACGTCCTTGCTGACTCATCCACTCTCATCCTGCCAGCGCTGTCCATTGGAAATGTCGGACAGCTTGCCGTGGATCTTTTAGTTGCATCAACAAAGGCGGAGAGAGTTGGATACTTGGACACTCCCTTTATCCTTCCATGTGTTGGCAACGACGCGTATGGGCCTGTTCCTCAAGGAGAGCTTGCTCTCCCTCTTGAAGCTTATGACTCATCTTCTAAATCTTTGTCTTTAATCCAACAAAGATCCCCTGTTGTTAAGGGGAAGATGATTGAATTTGCTAAGAACTTGGCTGATTATGTTGCTGCCAGTGGAAAGAAGCATGTCATTGTGCTTTCAAGCTTAGACTTTGGGAGGTGGCAGAGAATTGATATGTCAAGTGGTTCACAGATGCATTACTTGTCAAGCACTAATTCGGATGGAACAGATGATCACTGTGAACAACTTGGGTGGAAAAGACTTCAGGAATATAACCCAAATCAGAGGTCTTGGAAGTATCTTAGCACATTAGCTGAAGACAATGTTATGCCAGAGGACAGCTTGCCCTTTGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

194

Amino Acids

21.17

Weight (kDa)

4.82

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 18 - 131 5.9e-21 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AccII CGCG 1 cut(s) 182
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 108, 264
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 2 cut(s) 470, 558
AfeI AGCGCT 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 20, 170, 575
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 4 cut(s) 224, 299, 363, 575
AluBI AGCT 6 cut(s) 91, 208, 227, 366, 536, 564
AluI AGCT 6 cut(s) 91, 208, 227, 366, 536, 564
AlwI GGATC 2 cut(s) 108, 264
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 80
BciVI GTATCC 1 cut(s) 131
BclI TGATCA 1 cut(s) 454
BfoI RGCGCY 1 cut(s) 68
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 2 cut(s) 122, 405
BpiI GAAGAC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 170, 575
Bse1I ACTGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 3 cut(s) 44, 54, 448
BseLI CCNNNNNNNGG 3 cut(s) 20, 170, 575
BseNI ACTGG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 20, 170, 575
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 100, 269, 454
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 190
BspFNI CGCG 1 cut(s) 182
BspPI GGATC 2 cut(s) 108, 264
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 100, 269, 454
Bst4CI ACNGT 1 cut(s) 461
BstC8I GCNNGC 4 cut(s) 63, 93, 210, 566
BstDEI CTNAG 3 cut(s) 306, 367, 524
BstDSI CCRYGG 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 3 cut(s) 44, 54, 448
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 103, 272, 457
BstMBI GATC 3 cut(s) 100, 269, 454
BstNSI RCATGY 1 cut(s) 350
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 2 cut(s) 100, 269
BstYI RGATCY 2 cut(s) 100, 269
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 44, 54, 448
BtsIMutI CAGTG 2 cut(s) 340, 457
Cac8I GCNNGC 4 cut(s) 63, 93, 210, 566
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 1 cut(s) 188
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 2 cut(s) 165, 347
CviJI RGCY 9 cut(s) 91, 190, 208, 227, 317, 366, 536, 564, 579
CviKI_1 RGCY 9 cut(s) 91, 190, 208, 227, 317, 366, 536, 564, 579
DdeI CTNAG 3 cut(s) 306, 367, 524
DpnI GATC 3 cut(s) 102, 271, 456
DpnII GATC 3 cut(s) 100, 269, 454
EciI GGCGGA 1 cut(s) 140
Eco47III AGCGCT 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 470, 558
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 420
FaeI CATG 2 cut(s) 168, 350
FaiI YATR 8 cut(s) 166, 186, 231, 324, 348, 398, 495, 551
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 2 cut(s) 164, 346
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 31, 41, 455
Fsp4HI GCNGC 1 cut(s) 330
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 190
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 168, 350
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 2 cut(s) 225, 364
HinfI GANTC 2 cut(s) 41, 233
Hpy166II GTNNAC 2 cut(s) 410, 464
Hpy188I TCNGA 3 cut(s) 86, 442, 507
Hpy188III TCNNGA 3 cut(s) 14, 221, 488
Hpy8I GTNNAC 2 cut(s) 410, 464
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 170, 569
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 113, 418
HpyF3I CTNAG 3 cut(s) 306, 367, 524
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 168, 350
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 100, 269, 454
LpnPI CCDG 8 cut(s) 27, 71, 75, 204, 288, 346, 473, 567
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 122, 405
MaeII ACGT 1 cut(s) 30
MalI GATC 3 cut(s) 102, 271, 456
MboI GATC 3 cut(s) 100, 269, 454
MboII GAAGA 3 cut(s) 231, 301, 551
MflI RGATCY 2 cut(s) 100, 269
MluCI AATT 3 cut(s) 299, 390, 436
MluI ACGCGT 1 cut(s) 180
MlyI GAGTC 2 cut(s) 35, 227
MmeI TCCRAC 3 cut(s) 64, 115, 286
MnlI CCTC 5 cut(s) 207, 228, 372, 501, 550
Mph1103I ATGCAT 1 cut(s) 420
MseI TTAA 2 cut(s) 257, 282
MvnI CGCG 1 cut(s) 182
NdeII GATC 3 cut(s) 100, 269, 454
NlaIII CATG 2 cut(s) 168, 350
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 35, 227
PpsI GAGTC 2 cut(s) 35, 227
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 100, 269
SaqAI TTAA 2 cut(s) 257, 282
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 3 cut(s) 100, 269, 454
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 35, 227
SetI ASST 9 cut(s) 33, 93, 210, 229, 368, 383, 512, 538, 566
SfaNI GCATC 2 cut(s) 122, 405
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 3 cut(s) 299, 390, 436
SsiI CCGC 1 cut(s) 125
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 33
TasI AATT 3 cut(s) 299, 390, 436
Tru1I TTAA 2 cut(s) 257, 282
Tru9I TTAA 2 cut(s) 257, 282
TscAI CASTG 2 cut(s) 340, 464
TseI GCWGC 1 cut(s) 329
TspRI CASTG 2 cut(s) 340, 464
Van91I CCANNNNNTGG 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.