Rroxscaffold_7G00207570

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002770
Physical Location & Seq
Forward (+)
57492917 .. 57495599
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207570.1

Sequence Viewer

Length: 549 bp
ATGGAATTCATTCCCGAAGAAGGCACACACAACCACGCCGACGCCTCCACTCTAATCCTGCCGGCGCTGTCGATTGGAAATGTGGGCCAGCTCGCCGTGGATCTCTTAGTCGCGTCGACGAAGGCGGAGAGAGTCGGGTTTCCGGATAGTCCGTATGTCCTTCCATGTGTTGGAAACGATGCATATGGGCCTGTTCCTCAAGGCCACCTTGCTCTTCCTCTTGAAGCTTATGGATGGGCTTCTAATGGAATGGCTTTAATCCAGCAAAGGTCACCTGCTGTTAAGAGAATTGTGGTTCCCAGATGCATTACCTGTCTAGCAGCAATGCCGATGGAAAAGATGATTACTGCGAACAGCTTGGGTGGAAAAGACTTCAGGATTATAACCCCAATTAGAGAAGGAGACAACACACCTGATGCTTTCCATTTGGCTGAAGCAGCATGCAAACTTCTGGGTGTGAGTCCCAGTAATTTCCATGATGCACACACGGTTGCTGACATGTATATGTGTTGGTGCTTTAATGCATTTGCAGTCTTGACTGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

182

Amino Acids

19.47

Weight (kDa)

5.23

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC2 PF09754 18 - 121 1.1e-11 PAC2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 2 cut(s) 358, 453
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 20, 170
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 91, 227, 357
AluI AGCT 3 cut(s) 91, 227, 357
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 3 cut(s) 85, 188, 202
ApeKI GCWGC 2 cut(s) 320, 437
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 85, 188
AsuHPI GGTGA 1 cut(s) 264
BbvI GCAGC 2 cut(s) 332, 449
BccI CCATC 2 cut(s) 228, 325
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 2 cut(s) 321, 438
BlsI GCNGC 2 cut(s) 322, 439
BmgT120I GGNCC 2 cut(s) 85, 188
BmiI GGNNCC 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 4 cut(s) 169, 293, 406, 469
BmuI ACTGGG 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 170
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 2 cut(s) 20, 170
BseMI GCAATG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 465
BseXI GCAGC 2 cut(s) 332, 449
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 87, 190, 204
BsiSI CCGG 2 cut(s) 62, 143
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 20, 170
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 3 cut(s) 87, 190, 204
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 125
BspANI GGCC 3 cut(s) 87, 190, 204
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 544
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 63, 89, 93, 442
BstDEI CTNAG 1 cut(s) 106
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 270
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNSI RCATGY 2 cut(s) 444, 502
BstPI GGTNACC 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 332, 449
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 87, 190, 204
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 239
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 4 cut(s) 63, 89, 93, 442
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 85, 188
CseI GACGC 2 cut(s) 50, 102
CviAII CATG 4 cut(s) 165, 441, 476, 499
CviJI RGCY 9 cut(s) 87, 91, 190, 204, 227, 239, 254, 357, 431
CviKI_1 RGCY 9 cut(s) 87, 91, 190, 204, 227, 239, 254, 357, 431
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 358, 453
Eco91I GGTNACC 1 cut(s) 270
EcoO65I GGTNACC 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 5
EcoT22I ATGCAT 3 cut(s) 184, 308, 526
FaeI CATG 4 cut(s) 168, 444, 479, 502
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 447
FatI CATG 4 cut(s) 164, 440, 475, 498
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 2 cut(s) 321, 438
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 321, 438
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 321, 438
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 3 cut(s) 87, 190, 204
HapII CCGG 2 cut(s) 62, 143
HgaI GACGC 2 cut(s) 50, 102
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 168, 444, 479, 502
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 2 cut(s) 132, 460
HpaII CCGG 2 cut(s) 62, 143
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 117
Hpy188III TCNNGA 5 cut(s) 14, 143, 221, 376, 535
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 3 cut(s) 44, 118, 121
HpyAV CCTTC 4 cut(s) 14, 115, 170, 392
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 7 cut(s) 182, 306, 444, 482, 524, 530, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 168, 444, 479, 502
HspAI GCGC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 142
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 219
Lsp1109I GCAGC 2 cut(s) 332, 449
LweI GCATC 4 cut(s) 169, 293, 406, 469
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 29, 206
MflI RGATCY 1 cut(s) 100
MluCI AATT 4 cut(s) 5, 288, 390, 469
MlyI GAGTC 2 cut(s) 141, 469
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 3 cut(s) 55, 207, 228
Mph1103I ATGCAT 3 cut(s) 184, 308, 526
MroI TCCGGA 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 4 cut(s) 257, 282, 519, 547
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 2 cut(s) 62, 143
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 437
NaeI GCCGGC 1 cut(s) 63
NdeI CATATG 1 cut(s) 184
NdeII GATC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 4 cut(s) 168, 444, 479, 502
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 3 cut(s) 184, 308, 526
NspI RCATGY 2 cut(s) 444, 502
PaeI GCATGC 1 cut(s) 444
PaqCI CACCTGC 1 cut(s) 283
PciI ACATGT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 2 cut(s) 322, 439
PleI GAGTC 2 cut(s) 140, 468
PpsI GAGTC 2 cut(s) 140, 468
PscI ACATGT 1 cut(s) 498
PsiI TTATAA 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 85, 188
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 503
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 4 cut(s) 257, 282, 519, 547
SatI GCNGC 2 cut(s) 321, 438
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 85, 188
SchI GAGTC 2 cut(s) 141, 469
SetI ASST 8 cut(s) 93, 210, 229, 272, 277, 314, 359, 415
SfaNI GCATC 4 cut(s) 169, 293, 406, 469
SfcI CTRYAG 1 cut(s) 540
SgrDI CGTCGACG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SphI GCATGC 1 cut(s) 444
Sse9I AATT 4 cut(s) 5, 288, 390, 469
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 2 cut(s) 71, 116
TasI AATT 4 cut(s) 5, 288, 390, 469
Tru1I TTAA 4 cut(s) 257, 282, 519, 547
Tru9I TTAA 4 cut(s) 257, 282, 519, 547
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 320, 437
Tsp45I GTSAC 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 5
XceI RCATGY 2 cut(s) 444, 502
XmiI GTMKAC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 317
Zsp2I ATGCAT 3 cut(s) 184, 308, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.