Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Reverse (-)

79164968 .. 79165696

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAATTCTACCACAACCAACTCAAGCTCAGGTTATTGAATGAGAAGAAACCCAGTGTCTACAAAAGAGTTGATTGGCTGGTTGACAAGCTGGGTACCCAAGTGCATTCCTATTTCTGGCTTGATGAATACTCTGAGAAGGATGATTTTGCACGATACTGGAAAGATGAGTGGGTGAACGGTTTAACAGCTTGGCGAACTGCTTTGGAGATTCCAGACTCTAATGTTGTCATTGAAGGTACACGTGCAAAAGTAACAGACCAGCTTGATCAAGAAAAGGCTTATGTTGTTTGGAACCCTGGTTCACAATTCAGTATTTGCAACTGCAGTTGGGCAGAAATGGGGAACCTGTGTGAGCATATACTCAAGGTTATTAGTGTCTGCAGGAAAAGAAGTCATCATGTGCCATCTGTCAGCTTATTGCAGTTCCACCAGGCCTTGCTTGATATGCTCCATTGCCCACCTCATGATTCTTTAATTCGTGATCATGCTGTTTCTTTAGCGGTCTTTGTACAGAACCAGTTAAGTGGACCTAATTTGGAAAGCAGCAATAGCACAATGGATCAGGCAGCTTTAGCCGATAAAGATCTAGAAATAGTAAATGAGGGCCCAGTAAGTGAAGAAGTATTATCTCATAATGAGAATAGTTGTGCGGATGAGCATGTTGCTGTGGGTGCTGAAACGAGTAGTCCAGTTGCTTGTGGAAATGGCATATATAATGAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

5.06

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	2 cut(s)	503, 653
AclWI	GGATC	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	245
AfaI	GTAC	3 cut(s)	97, 241, 513
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	40, 236
AjnI	CCWGG	2 cut(s)	298, 432
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	6 cut(s)	28, 91, 191, 265, 417, 572
AluI	AGCT	6 cut(s)	28, 91, 191, 265, 417, 572
AlwI	GGATC	1 cut(s)	570
AoxI	GGCC	2 cut(s)	435, 607
ApaI	GGGCCC	1 cut(s)	611
ApeKI	GCWGC	2 cut(s)	546, 569
ApoI	RAATTY	1 cut(s)	5
Asp718I	GGTACC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	530, 607, 608
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	611
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	611
BbrPI	CACGTG	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	558, 581
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	300, 434
BclI	TGATCA	2 cut(s)	268, 484
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	2 cut(s)	325, 382
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	547, 570
BlsI	GCNGC	2 cut(s)	548, 571
Bme1390I	CCNGG	2 cut(s)	300, 434
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	3 cut(s)	530, 607, 608
BmiI	GGNNCC	4 cut(s)	97, 296, 347, 609
BmrFI	CCNGG	2 cut(s)	300, 434
BmrI	ACTGGG	2 cut(s)	48, 605
BmuI	ACTGGG	2 cut(s)	48, 605
Bpu10I	CCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	8, 350
BsaAI	YACGTR	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	5 cut(s)	54, 164, 520, 611, 692
Bse3DI	GCAATG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	300, 434
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	148, 661
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	43, 126
BseNI	ACTGG	5 cut(s)	54, 164, 520, 611, 692
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	558, 581
BseYI	CCCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	437, 609
BshNI	GGYRCC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	437, 609
Bsp120I	GGGCCC	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	268, 484, 562, 586
BspACI	CCGC	2 cut(s)	503, 653
BspANI	GGCC	2 cut(s)	437, 609
BspCNI	CTCAG	2 cut(s)	42, 127
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	97, 296, 347, 609
BspMAI	CTGCAG	2 cut(s)	329, 386
BspPI	GGATC	1 cut(s)	570
BspT107I	GGYRCC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	5 cut(s)	54, 164, 520, 611, 692
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	4 cut(s)	268, 484, 562, 586
Bst2UI	CCWGG	2 cut(s)	300, 434
Bst4CI	ACNGT	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	29, 135
BstF5I	GGATG	2 cut(s)	148, 661
BstKTI	GATC	4 cut(s)	271, 487, 565, 589
BstMBI	GATC	4 cut(s)	268, 484, 562, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	448, 552, 575, 674
BstNI	CCWGG	2 cut(s)	300, 434
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	298, 432
BstSFI	CTRYAG	2 cut(s)	325, 382
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	2 cut(s)	558, 581
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	437, 609
BtsCI	GGATG	2 cut(s)	148, 661
BtsIMutI	CAGTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	530, 607, 608
Csp6I	GTAC	3 cut(s)	96, 240, 512
CviAII	CATG	4 cut(s)	401, 467, 488, 662
CviQI	GTAC	3 cut(s)	96, 240, 512
DdeI	CTNAG	2 cut(s)	29, 135
DpnI	GATC	4 cut(s)	270, 486, 564, 588
DpnII	GATC	4 cut(s)	268, 484, 562, 586
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	530
Eco72I	CACGTG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	298, 432
EcoT38I	GRGCYC	1 cut(s)	611
FaeI	CATG	4 cut(s)	404, 470, 491, 665
FatI	CATG	4 cut(s)	400, 466, 487, 661
FbaI	TGATCA	2 cut(s)	268, 484
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	547, 570
FokI	GGATG	2 cut(s)	155, 668
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	2 cut(s)	547, 570
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	2 cut(s)	547, 570
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	437, 609
Hin1II	CATG	4 cut(s)	404, 470, 491, 665
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	211, 218, 470
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	6 cut(s)	61, 85, 178, 242, 305, 530
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	5 cut(s)	215, 272, 467, 482, 590
Hpy8I	GTNNAC	6 cut(s)	61, 85, 178, 242, 305, 530
HpyAV	CCTTC	2 cut(s)	133, 230
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	7 cut(s)	106, 152, 248, 321, 327, 384, 424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	448, 552, 575, 674
HpyF3I	CTNAG	2 cut(s)	29, 135
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	404, 470, 491, 665
KpnI	GGTACC	1 cut(s)	99
Ksp22I	TGATCA	2 cut(s)	268, 484
Kzo9I	GATC	4 cut(s)	268, 484, 562, 586
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	2 cut(s)	558, 581
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	4 cut(s)	270, 486, 564, 588
MboI	GATC	4 cut(s)	268, 484, 562, 586
MboII	GAAGA	2 cut(s)	58, 632
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	4 cut(s)	5, 308, 477, 535
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	3 cut(s)	474, 598, 715
MseI	TTAA	3 cut(s)	185, 476, 524
MspR9I	CCNGG	2 cut(s)	300, 434
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	300, 434
MwoI	GCNNNNNNNGC	4 cut(s)	448, 552, 575, 674
NdeII	GATC	4 cut(s)	268, 484, 562, 586
NlaIII	CATG	4 cut(s)	404, 470, 491, 665
NlaIV	GGNNCC	4 cut(s)	97, 296, 347, 609
NspI	RCATGY	1 cut(s)	665
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	437
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	211, 470
PkrI	GCNGC	2 cut(s)	548, 571
PleI	GAGTC	1 cut(s)	212
PmaCI	CACGTG	1 cut(s)	245
PmlI	CACGTG	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	298, 432
PspCI	CACGTG	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	2 cut(s)	298, 432
PspN4I	GGNNCC	4 cut(s)	97, 296, 347, 609
PspOMI	GGGCCC	1 cut(s)	607
PspPI	GGNCC	3 cut(s)	530, 607, 608
PstI	CTGCAG	2 cut(s)	329, 386
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	97, 241, 513
RsaNI	GTAC	3 cut(s)	96, 240, 512
SaqAI	TTAA	3 cut(s)	185, 476, 524
SatI	GCNGC	2 cut(s)	547, 570
Sau3AI	GATC	4 cut(s)	268, 484, 562, 586
Sau96I	GGNCC	3 cut(s)	530, 607, 608
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	300, 434
SduI	GDGCHC	1 cut(s)	611
SfcI	CTRYAG	2 cut(s)	325, 382
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	23, 365
SmoI	CTYRAG	2 cut(s)	23, 365
Sse9I	AATT	4 cut(s)	5, 308, 477, 535
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	2 cut(s)	503, 653
SspMI	CTAG	1 cut(s)	590
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	298, 432
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	247
TasI	AATT	4 cut(s)	5, 308, 477, 535
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	211, 470
Tru1I	TTAA	3 cut(s)	185, 476, 524
Tru9I	TTAA	3 cut(s)	185, 476, 524
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	2 cut(s)	546, 569
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	5
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.