Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005816.1

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

87852 .. 90499

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005816.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgattgaatttgctaagaagttggctgattatgttgctgcgagtgggaagaagcatgtgactgtgctttcgagcttggactttgggaggtggcagagaattgatatgtcaagtggttcccagatgcattacctctctagtagcaatgccgatggaacagatgacaactgcgaaaagcttgggtggaaaagacttcaggattataaccccaatcagaggtcatggaagtatcttaacacattagctgatggcaatgccacgccagaggacagcttaccttttgaaggtgaattgcaagaagaagaatactactacccaagcttgccttttgcagctctcttttcttccttcaaggcaaaaggattgaaggtcacctgtatattatgctactgctcagaaggagacaacacacctgatgctttccatttggctgaagcagcatgcaaacttctgggtgtgagtcccagtaatttccatggcaacactgataattggcttattccaatttcttggaagactgtgtatggaccacccgcagatatgtctctcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

5.02

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AciI	CCGC	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	179, 453
AfiI	CCNNNNNNNGG	2 cut(s)	216, 284
AgsI	TTSAA	4 cut(s)	8, 284, 352, 367
AluBI	AGCT	6 cut(s)	75, 178, 245, 273, 321, 335
AluI	AGCT	6 cut(s)	75, 178, 245, 273, 321, 335
Alw26I	GTCTC	2 cut(s)	396, 549
ApeKI	GCWGC	3 cut(s)	38, 332, 437
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	299, 364
AvaII	GGWCC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	25, 344, 449
BccI	CCATC	2 cut(s)	146, 242
BcoDI	GTCTC	2 cut(s)	396, 549
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	39, 333, 438
BlsI	GCNGC	3 cut(s)	40, 334, 439
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	114, 406
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 284
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	2 cut(s)	151, 259
BseDI	CCNNGG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	216, 284
BseMI	GCAATG	2 cut(s)	151, 259
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	25, 344, 449
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	216, 284
BsmAI	GTCTC	2 cut(s)	396, 549
BsmFI	GGGAC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	151, 259
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	64, 520
BstC8I	GCNNGC	2 cut(s)	323, 442
BstDEI	CTNAG	2 cut(s)	15, 394
BstDSI	CCRYGG	1 cut(s)	475
BstEII	GGTNACC	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstMAI	GTCTC	2 cut(s)	396, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	2 cut(s)	59, 444
BstPI	GGTNACC	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	25, 344, 449
BstV2I	GAAGAC	1 cut(s)	521
BstXI	CCANNNNNNTGG	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	323, 442
Cfr13I	GGNCC	1 cut(s)	527
CviAII	CATG	4 cut(s)	56, 222, 441, 476
CviJI	RGCY	9 cut(s)	26, 75, 178, 245, 273, 321, 335, 431, 496
CviKI_1	RGCY	9 cut(s)	26, 75, 178, 245, 273, 321, 335, 431, 496
DdeI	CTNAG	2 cut(s)	15, 394
Eco130I	CCWWGG	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	179, 453
Eco91I	GGTNACC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	4 cut(s)	59, 225, 444, 479
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	4 cut(s)	55, 221, 440, 475
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	39, 333, 438
Fsp4HI	GCNGC	3 cut(s)	39, 333, 438
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	3 cut(s)	39, 333, 438
Hin1II	CATG	4 cut(s)	59, 225, 444, 479
HindIII	AAGCTT	2 cut(s)	176, 319
HinfI	GANTC	1 cut(s)	460
HphI	GGTGA	2 cut(s)	299, 364
Hpy188I	TCNGA	2 cut(s)	216, 397
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	4 cut(s)	278, 358, 361, 392
HpyCH4III	ACNGT	2 cut(s)	64, 520
HpyCH4V	TGCA	4 cut(s)	127, 295, 332, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	15, 394
Hsp92II	CATG	4 cut(s)	59, 225, 444, 479
LpnPI	CCDG	7 cut(s)	134, 182, 276, 388, 426, 437, 478
Lsp1109I	GCAGC	3 cut(s)	25, 344, 449
LweI	GCATC	2 cut(s)	114, 406
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	58, 370
MboII	GAAGA	5 cut(s)	61, 311, 314, 336, 526
MluCI	AATT	6 cut(s)	8, 99, 290, 469, 490, 504
MlyI	GAGTC	1 cut(s)	469
MnlI	CCTC	4 cut(s)	81, 143, 210, 259
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	2 cut(s)	234, 553
MwoI	GCNNNNNNNGC	1 cut(s)	437
NcoI	CCATGG	1 cut(s)	475
NlaIII	CATG	4 cut(s)	59, 225, 444, 479
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	58, 370
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	2 cut(s)	59, 444
PaeI	GCATGC	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	40, 334, 439
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	234, 553
SatI	GCNGC	3 cut(s)	39, 333, 438
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	469
SfaNI	GCATC	2 cut(s)	114, 406
SinI	GGWCC	1 cut(s)	527
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	6 cut(s)	8, 99, 290, 469, 490, 504
SsiI	CCGC	1 cut(s)	534
SspMI	CTAG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	64, 520
TaqI	TCGA	1 cut(s)	71
TasI	AATT	6 cut(s)	8, 99, 290, 469, 490, 504
Tru1I	TTAA	2 cut(s)	234, 553
Tru9I	TTAA	2 cut(s)	234, 553
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	58, 370
TseI	GCWGC	3 cut(s)	38, 332, 437
Tsp45I	GTSAC	2 cut(s)	58, 370
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	527
XagI	CCTNNNNNAGG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	2 cut(s)	59, 444
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.