Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002770

Physical Location & Seq

Genomic Coordinates Forward (+)

79156120 .. 79156683

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCATCGATCTGTCGAGCAATAGATTTGAAGGCAAGATTCCAGAATTTATTGGGAACCTAAAGGGGCTTCGCTCACTTAATGTATCCAGTAACATTCTAAGTGGCCGCATCCCACCATCCTTGGGAAACTTGACAAATCTTGAAGCTTTGGATCTTTCACATAACAAGTTCGAGGGTGAGATCCCTCCATCATTGTTGCAGCTTTCATTCCTCCAAATTTTCAGCGTCTCGCACAACAATCTCACAGGTCGAATACCGGTTGGAAACCAGTTTAGTACCTTCGACAACACTTCATATGAGGGAAACCGAGGTTTGTGTGGAGCTCCATTGCCAAAGAAATGTTCGCGTTCTGAGGAGGGGCCTGAACTTCCACCTTCAACAGCAGAAGAAGAAGATGGAGTTGAATTGGATTGGAAATTTGCTGCGGCGGGGTTAGTGAGTGGGTTGGTGGTGGGAGTGGTTCTTGCAGACTTTGTGATCACGAGGTTCAGTGAGCGGTTCATTGAGATTGTTGCATTTCTGATCAGACTGATGAAAAGGATGAGAAGGCCCAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAC2

Protein Analysis

187

Amino Acids

20.55

Weight (kDa)

6.16

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	2 - 58	8.2e-08	Leucine rich repeat
LRR_14	PF23598	16 - 80	7.8e-06	Leucine-rich repeat region
LRR_LRWD1	PF23211	22 - 106	4.5e-06	Leucine-rich repeat and WD repeat-containing protein 1, LRR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18940
fragaria_vesca	FvH4_5g16250 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360 FvH4_5g27360
malus_domestica	MD10G1085900.v1.1
prunus_persica	Prupe.8G110200_v2.0.a1 Prupe.8G110200_v2.0.a1
pyrus_communis	pycom10g06750
rosa_chinensis	RchiOBHm_Chr6g0260971 RchiOBHm_Chr6g0261021
rosa_laevigata	RLG00000014468 RLG00000014472 RLG00000014474 RLG00000018640
rosa_multiflora	Rmu_sc0003337.1_g000013 Rmu_sc0003337.1_g000027 Rmu_sc0005816.1_g000016 Rmu_sc0005816.1_g000028
rosa_roxburghii	Rroxscaffold_7G00207570 Rroxscaffold_7G00207610
rosa_rugosa	Rorug02G0235400 Rorug05G0593600 Rorug05G0593700 Rorug05G0593800 Rorug05G0593900 Rorug05G0594000 Rorug05G0594100 Rorug05G0594200 Rorug05G0594300
rosa_samantha	Rh6AG113500 Rh6AG113800 Rh6BG107300 Rh6CG104500 Rh6DG095300
rosa_wichuraiana	Rw6G009650 Rw6G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AccII	CGCG	1 cut(s)	349
AciI	CCGC	4 cut(s)	109, 428, 431, 499
AclWI	GGATC	2 cut(s)	162, 178
AcoI	YGGCCR	2 cut(s)	3, 106
AcsI	RAATTY	3 cut(s)	47, 219, 419
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	32, 146, 381, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	3 cut(s)	149, 205, 326
AluI	AGCT	3 cut(s)	149, 205, 326
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	162, 178
AoxI	GGCC	4 cut(s)	3, 106, 362, 551
ApeKI	GCWGC	2 cut(s)	202, 425
ApoI	RAATTY	3 cut(s)	47, 219, 419
AsiGI	ACCGGT	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	362, 552
AsuHPI	GGTGA	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	214, 412
BccI	CCATC	4 cut(s)	14, 127, 199, 392
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	2 cut(s)	480, 525
BcoDI	GTCTC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	4 cut(s)	109, 203, 426, 429
BlsI	GCNGC	4 cut(s)	110, 204, 427, 430
BmgT120I	GGNCC	2 cut(s)	362, 552
BmiI	GGNNCC	2 cut(s)	59, 363
BmsI	GCATC	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	123, 310
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	90, 271
Bse3DI	GCAATG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	123, 310
BseGI	GGATG	3 cut(s)	111, 119, 549
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	90, 271
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	214, 412
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	4 cut(s)	5, 108, 364, 553
BshTI	ACCGGT	1 cut(s)	259
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsnI	GGCC	4 cut(s)	5, 108, 364, 553
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	10, 154, 183, 480, 525
BspACI	CCGC	4 cut(s)	109, 428, 431, 499
BspANI	GGCC	4 cut(s)	5, 108, 364, 553
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	59, 363
BspPI	GGATC	2 cut(s)	162, 178
BsrBI	CCGCTC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	90, 271
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	123, 310
BssMI	GATC	5 cut(s)	10, 154, 183, 480, 525
BssSI	CACGAG	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	101, 354
BstF5I	GGATG	3 cut(s)	111, 119, 549
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	5 cut(s)	13, 157, 186, 483, 528
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	10, 154, 183, 480, 525
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	214, 412
BstX2I	RGATCY	2 cut(s)	154, 183
BstYI	RGATCY	2 cut(s)	154, 183
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	5, 108, 364, 553
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	111, 119, 549
BtsIMutI	CAGTG	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	362, 552
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	279
CspAI	ACCGGT	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviJI	RGCY	8 cut(s)	5, 70, 108, 149, 205, 326, 364, 553
CviKI_1	RGCY	8 cut(s)	5, 70, 108, 149, 205, 326, 364, 553
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	101, 354
DpnI	GATC	5 cut(s)	12, 156, 185, 482, 527
DpnII	GATC	5 cut(s)	10, 154, 183, 480, 525
EaeI	YGGCCR	2 cut(s)	3, 106
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	235
FaiI	YATR	3 cut(s)	165, 298, 300
FauI	CCCGC	1 cut(s)	424
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	2 cut(s)	480, 525
Fnu4HI	GCNGC	4 cut(s)	109, 203, 426, 429
FokI	GGATG	3 cut(s)	98, 106, 556
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	109, 203, 426, 429
GluI	GCNGC	4 cut(s)	109, 203, 426, 429
HaeIII	GGCC	4 cut(s)	5, 108, 364, 553
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	355, 525, 530
Hpy188III	TCNNGA	3 cut(s)	44, 143, 484
HpyAV	CCTTC	4 cut(s)	26, 292, 387, 543
HpyCH4V	TGCA	3 cut(s)	202, 470, 518
HpyF3I	CTNAG	2 cut(s)	101, 354
Ksp22I	TGATCA	2 cut(s)	480, 525
Kzo9I	GATC	5 cut(s)	10, 154, 183, 480, 525
LmnI	GCTCC	2 cut(s)	323, 331
LpnPI	CCDG	6 cut(s)	57, 103, 234, 273, 284, 378
Lsp1109I	GCAGC	2 cut(s)	214, 412
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	5 cut(s)	12, 156, 185, 482, 527
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	5 cut(s)	10, 154, 183, 480, 525
MboII	GAAGA	3 cut(s)	401, 404, 407
MflI	RGATCY	2 cut(s)	154, 183
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	47, 219, 407, 419
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	8 cut(s)	169, 198, 224, 295, 305, 349, 352, 480
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	5 cut(s)	10, 154, 183, 480, 525
NlaIV	GGNNCC	2 cut(s)	59, 363
PfeI	GAWTC	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	110, 204, 427, 430
Psp124BI	GAGCTC	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	59, 363
PspPI	GGNCC	2 cut(s)	362, 552
PsuI	RGATCY	2 cut(s)	154, 183
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	109, 203, 426, 429
Sau3AI	GATC	5 cut(s)	10, 154, 183, 480, 525
Sau96I	GGNCC	2 cut(s)	362, 552
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	9 cut(s)	63, 151, 207, 253, 284, 316, 328, 379, 491
SfaNI	GCATC	1 cut(s)	120
Sse9I	AATT	4 cut(s)	47, 219, 407, 419
SsiI	CCGC	4 cut(s)	109, 428, 431, 499
SstI	GAGCTC	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	5 cut(s)	9, 17, 174, 253, 285
TasI	AATT	4 cut(s)	47, 219, 407, 419
TauI	GCSGC	2 cut(s)	111, 431
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	2 cut(s)	202, 425
TspDTI	ATGAA	4 cut(s)	198, 285, 493, 551
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	3 cut(s)	47, 219, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.