Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c | PF02518 | 80 - 175 | 8.6e-07 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| DNA_gyraseB | PF00204 | 269 - 427 | 7.2e-28 | DNA gyrase B |
| Toprim | PF01751 | 456 - 555 | 4.1e-08 | Toprim domain |
| TOPRIM_C | PF16898 | 571 - 699 | 9.8e-52 | C-terminal associated domain of TOPRIM |
| DNA_topoisoIV | PF00521 | 702 - 1163 | 5.6e-123 | DNA gyrase/topoisomerase IV, subunit A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 617, 1715 |
| AarI | CACCTGC | 1 cut(s) | 3955 |
| Acc36I | ACCTGC | 4 cut(s) | 565, 928, 3955, 4206 |
| AccB1I | GGYRCC | 2 cut(s) | 2623, 3613 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1021 |
| AccI | GTMKAC | 1 cut(s) | 3841 |
| AccII | CGCG | 1 cut(s) | 1738 |
| AccIII | TCCGGA | 1 cut(s) | 3313 |
| AcoI | YGGCCR | 2 cut(s) | 1591, 1673 |
| AcsI | RAATTY | 5 cut(s) | 402, 527, 1234, 2788, 2933 |
| AcuI | CTGAAG | 7 cut(s) | 1223, 1401, 1826, 2547, 2948, 3306, 3315 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 81, 1021, 1087, 1299, 1460 |
| AflII | CTTAAG | 2 cut(s) | 916, 3199 |
| AflIII | ACRYGT | 2 cut(s) | 982, 1736 |
| AgeI | ACCGGT | 1 cut(s) | 610 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3490 |
| AjiI | CACGTC | 1 cut(s) | 4012 |
| AjnI | CCWGG | 5 cut(s) | 235, 1686, 1701, 2011, 2832 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 357, 389 |
| Alw21I | GWGCWC | 2 cut(s) | 2552, 2824 |
| Alw26I | GTCTC | 7 cut(s) | 533, 550, 1380, 1649, 2026, 3498, 3659 |
| Alw44I | GTGCAC | 1 cut(s) | 2820 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 343, 3872, 3947 |
| Ama87I | CYCGRG | 1 cut(s) | 66 |
| Aor13HI | TCCGGA | 1 cut(s) | 3313 |
| AoxI | GGCC | 6 cut(s) | 1062, 1591, 1673, 3234, 3576, 4310 |
| ApaLI | GTGCAC | 1 cut(s) | 2820 |
| ApoI | RAATTY | 5 cut(s) | 402, 527, 1234, 2788, 2933 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3032, 3064 |
| AsiGI | ACCGGT | 1 cut(s) | 610 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 129, 803, 1197, 2362, 2933, 3212 |
| AspLEI | GCGC | 2 cut(s) | 2284, 2525 |
| AspS9I | GGNCC | 2 cut(s) | 1063, 3576 |
| AsuC2I | CCSGG | 5 cut(s) | 1822, 1984, 2139, 3339, 4151 |
| AsuHPI | GGTGA | 5 cut(s) | 2624, 2935, 3094, 3733, 3838 |
| AsuII | TTCGAA | 1 cut(s) | 2743 |
| AvaI | CYCGRG | 1 cut(s) | 66 |
| AxyI | CCTNAGG | 1 cut(s) | 3044 |
| BaeGI | GKGCMC | 1 cut(s) | 2824 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 216, 249, 969, 1002 |
| BalI | TGGCCA | 1 cut(s) | 1593 |
| BamHI | GGATCC | 3 cut(s) | 859, 2632, 3310 |
| BanI | GGYRCC | 2 cut(s) | 2623, 3613 |
| BanII | GRGCYC | 1 cut(s) | 2133 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2042, 2074, 2332, 2364 |
| BbsI | GAAGAC | 8 cut(s) | 92, 476, 705, 1892, 2466, 2813, 3644, 4407 |
| Bbv12I | GWGCWC | 2 cut(s) | 2552, 2824 |
| BbvCI | CCTCAGC | 1 cut(s) | 1866 |
| BceAI | ACGGC | 3 cut(s) | 1660, 1878, 3932 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 692, 726, 1990, 2024 |
| BciT130I | CCWGG | 5 cut(s) | 237, 1688, 1703, 2013, 2834 |
| BclI | TGATCA | 3 cut(s) | 1602, 1612, 2026 |
| BcnI | CCSGG | 5 cut(s) | 1822, 1984, 2139, 3339, 4151 |
| BcoDI | GTCTC | 7 cut(s) | 533, 550, 1380, 1649, 2026, 3498, 3659 |
| BfaI | CTAG | 8 cut(s) | 1310, 2370, 2574, 3113, 3488, 3509, 3735, 3908 |
| BfmI | CTRYAG | 5 cut(s) | 378, 543, 3372, 3387, 3549 |
| BfoI | RGCGCY | 1 cut(s) | 2526 |
| BfrI | CTTAAG | 2 cut(s) | 916, 3199 |
| BfuAI | ACCTGC | 4 cut(s) | 565, 928, 3955, 4206 |
| BglII | AGATCT | 2 cut(s) | 249, 1270 |
| BlpI | GCTNAGC | 2 cut(s) | 501, 3940 |
| BmcAI | AGTACT | 1 cut(s) | 1883 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3490 |
| BmeT110I | CYCGRG | 1 cut(s) | 66 |
| BmgBI | CACGTC | 1 cut(s) | 4012 |
| BmgT120I | GGNCC | 2 cut(s) | 1063, 3576 |
| BmiI | GGNNCC | 8 cut(s) | 861, 1291, 1692, 2625, 2634, 3312, 3615, 3864 |
| BmrI | ACTGGG | 1 cut(s) | 2550 |
| BmsI | GCATC | 5 cut(s) | 286, 1318, 2980, 3268, 3520 |
| BmuI | ACTGGG | 1 cut(s) | 2550 |
| BpiI | GAAGAC | 8 cut(s) | 92, 476, 705, 1892, 2466, 2813, 3644, 4407 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3308, 3340, 4165, 4197 |
| BpmI | CTGGAG | 9 cut(s) | 390, 1362, 1670, 2385, 3282, 3310, 3606, 3849, 4305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1866 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 501, 3940 |
| Bpu14I | TTCGAA | 1 cut(s) | 2743 |
| BpuEI | CTTGAG | 3 cut(s) | 545, 1514, 3519 |
| BpuMI | CCSGG | 5 cut(s) | 1822, 1984, 2139, 3339, 4151 |
| BsaAI | YACGTR | 2 cut(s) | 2049, 2293 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1601, 1617, 2433 |
| BsaI | GGTCTC | 1 cut(s) | 1649 |
| BsaJI | CCNNGG | 9 cut(s) | 869, 1540, 2088, 2424, 2636, 3078, 3227, 4091, 4149 |
| BsaWI | WCCGGW | 3 cut(s) | 412, 610, 3313 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 357, 363, 387, 393, 3579, 3609, 4278, 4308 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 81, 1021, 1087, 1299, 1460 |
| Bse118I | RCCGGY | 3 cut(s) | 77, 610, 4054 |
| Bse21I | CCTNAGG | 1 cut(s) | 3044 |
| Bse3DI | GCAATG | 5 cut(s) | 37, 2222, 3372, 3696, 3801 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1601, 1617, 2433 |
| BseAI | TCCGGA | 1 cut(s) | 3313 |
| BseBI | CCWGG | 5 cut(s) | 237, 1688, 1703, 2013, 2834 |
| BseDI | CCNNGG | 9 cut(s) | 869, 1540, 2088, 2424, 2636, 3078, 3227, 4091, 4149 |
| BseGI | GGATG | 7 cut(s) | 752, 1933, 2434, 2734, 2842, 3898, 4000 |
| BseJI | GATNNNNATC | 3 cut(s) | 1601, 1617, 2433 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 81, 1021, 1087, 1299, 1460 |
| BseMI | GCAATG | 5 cut(s) | 37, 2222, 3372, 3696, 3801 |
| BseRI | GAGGAG | 6 cut(s) | 1883, 2735, 3416, 3902, 4253, 4302 |
| BseSI | GKGCMC | 1 cut(s) | 2824 |
| BseYI | CCCAGC | 1 cut(s) | 2202 |
| BsgI | GTGCAG | 1 cut(s) | 855 |
| Bsh1236I | CGCG | 1 cut(s) | 1738 |
| Bsh1285I | CGRYCG | 1 cut(s) | 93 |
| BshFI | GGCC | 6 cut(s) | 1064, 1593, 1675, 3236, 3578, 4312 |
| BshNI | GGYRCC | 2 cut(s) | 2623, 3613 |
| BshTI | ACCGGT | 1 cut(s) | 610 |
| BsiEI | CGRYCG | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2552, 2824 |
| BsiHKCI | CYCGRG | 1 cut(s) | 66 |
| BslFI | GGGAC | 1 cut(s) | 4132 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 81, 1021, 1087, 1299, 1460 |
| BsmAI | GTCTC | 7 cut(s) | 533, 550, 1380, 1649, 2026, 3498, 3659 |
| BsmFI | GGGAC | 1 cut(s) | 4132 |
| BsmI | GAATGC | 1 cut(s) | 2165 |
| BsnI | GGCC | 6 cut(s) | 1064, 1593, 1675, 3236, 3578, 4312 |
| Bso31I | GGTCTC | 1 cut(s) | 1649 |
| BsoBI | CYCGRG | 1 cut(s) | 66 |
| Bsp119I | TTCGAA | 1 cut(s) | 2743 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2133, 2552, 2824 |
| Bsp13I | TCCGGA | 1 cut(s) | 3313 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 501, 3940 |
| Bsp19I | CCATGG | 1 cut(s) | 2088 |
| BspANI | GGCC | 6 cut(s) | 1064, 1593, 1675, 3236, 3578, 4312 |
| BspEI | TCCGGA | 1 cut(s) | 3313 |
| BspFNI | CGCG | 1 cut(s) | 1738 |
| BspHI | TCATGA | 2 cut(s) | 1605, 1621 |
| BspLI | GGNNCC | 8 cut(s) | 861, 1291, 1692, 2625, 2634, 3312, 3615, 3864 |
| BspMAI | CTGCAG | 1 cut(s) | 547 |
| BspMI | ACCTGC | 4 cut(s) | 565, 928, 3955, 4206 |
| BspT104I | TTCGAA | 1 cut(s) | 2743 |
| BspT107I | GGYRCC | 2 cut(s) | 2623, 3613 |
| BspTI | CTTAAG | 2 cut(s) | 916, 3199 |
| BspTNI | GGTCTC | 1 cut(s) | 1649 |
| BsrDI | GCAATG | 5 cut(s) | 37, 2222, 3372, 3696, 3801 |
| BsrFI | RCCGGY | 3 cut(s) | 77, 610, 4054 |
| BssAI | RCCGGY | 3 cut(s) | 77, 610, 4054 |
| BssECI | CCNNGG | 9 cut(s) | 869, 1540, 2088, 2424, 2636, 3078, 3227, 4091, 4149 |
| BssT1I | CCWWGG | 5 cut(s) | 869, 1540, 2088, 2424, 2636 |
| Bst2UI | CCWGG | 5 cut(s) | 237, 1688, 1703, 2013, 2834 |
| Bst4CI | ACNGT | 7 cut(s) | 362, 2054, 2106, 2509, 2612, 3079, 4114 |
| Bst6I | CTCTTC | 7 cut(s) | 548, 1158, 2886, 3024, 3059, 4190, 4230 |
| BstAFI | CTTAAG | 2 cut(s) | 916, 3199 |
| BstBAI | YACGTR | 2 cut(s) | 2049, 2293 |
| BstBI | TTCGAA | 1 cut(s) | 2743 |
| BstC8I | GCNNGC | 6 cut(s) | 79, 1489, 2249, 2904, 3612, 3921 |
| BstDSI | CCRYGG | 2 cut(s) | 2088, 3078 |
| BstF5I | GGATG | 7 cut(s) | 752, 1933, 2434, 2734, 2842, 3898, 4000 |
| BstFNI | CGCG | 1 cut(s) | 1738 |
| BstH2I | RGCGCY | 1 cut(s) | 2526 |
| BstHHI | GCGC | 2 cut(s) | 2284, 2525 |
| BstMAI | GTCTC | 7 cut(s) | 533, 550, 1380, 1649, 2026, 3498, 3659 |
| BstMCI | CGRYCG | 1 cut(s) | 93 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 44, 1337, 2529, 3257, 3554, 3869, 4067 |
| BstNI | CCWGG | 5 cut(s) | 237, 1688, 1703, 2013, 2834 |
| BstNSI | RCATGY | 3 cut(s) | 986, 2494, 2902 |
| BstSFI | CTRYAG | 5 cut(s) | 378, 543, 3372, 3387, 3549 |
| BstSLI | GKGCMC | 1 cut(s) | 2824 |
| BstSNI | TACGTA | 1 cut(s) | 2049 |
| BstUI | CGCG | 1 cut(s) | 1738 |
| BstV2I | GAAGAC | 8 cut(s) | 92, 476, 705, 1892, 2466, 2813, 3644, 4407 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2210 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3044 |
| BsuRI | GGCC | 6 cut(s) | 1064, 1593, 1675, 3236, 3578, 4312 |
| BtgI | CCRYGG | 2 cut(s) | 2088, 3078 |
| BtrI | CACGTC | 1 cut(s) | 4012 |
| BtsCI | GGATG | 7 cut(s) | 752, 1933, 2434, 2734, 2842, 3898, 4000 |
| BveI | ACCTGC | 4 cut(s) | 565, 928, 3955, 4206 |
| Cac8I | GCNNGC | 6 cut(s) | 79, 1489, 2249, 2904, 3612, 3921 |
| CaiI | CAGNNNCTG | 3 cut(s) | 343, 3872, 3947 |
| CciI | TCATGA | 2 cut(s) | 1605, 1621 |
| CfoI | GCGC | 2 cut(s) | 2284, 2525 |
| Cfr10I | RCCGGY | 3 cut(s) | 77, 610, 4054 |
| Cfr13I | GGNCC | 2 cut(s) | 1063, 3576 |
| CseI | GACGC | 1 cut(s) | 2664 |
| CspAI | ACCGGT | 1 cut(s) | 610 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1652, 1687, 2668, 2703, 3972, 4007 |
| DraI | TTTAAA | 1 cut(s) | 2653 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3490 |
| EaeI | YGGCCR | 2 cut(s) | 1591, 1673 |
| Eam1104I | CTCTTC | 7 cut(s) | 548, 1158, 2886, 3024, 3059, 4190, 4230 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3490 |
| EarI | CTCTTC | 7 cut(s) | 548, 1158, 2886, 3024, 3059, 4190, 4230 |
| EciI | GGCGGA | 1 cut(s) | 2108 |
| Eco105I | TACGTA | 1 cut(s) | 2049 |
| Eco130I | CCWWGG | 5 cut(s) | 869, 1540, 2088, 2424, 2636 |
| Eco147I | AGGCCT | 1 cut(s) | 4312 |
| Eco24I | GRGCYC | 1 cut(s) | 2133 |
| Eco31I | GGTCTC | 1 cut(s) | 1649 |
| Eco32I | GATATC | 2 cut(s) | 1831, 4305 |
| Eco57I | CTGAAG | 7 cut(s) | 1223, 1401, 1826, 2547, 2948, 3306, 3315 |
| Eco81I | CCTNAGG | 1 cut(s) | 3044 |
| Eco88I | CYCGRG | 1 cut(s) | 66 |
| EcoRI | GAATTC | 1 cut(s) | 527 |
| EcoRII | CCWGG | 5 cut(s) | 235, 1686, 1701, 2011, 2832 |
| EcoRV | GATATC | 2 cut(s) | 1831, 4305 |
| EcoT14I | CCWWGG | 5 cut(s) | 869, 1540, 2088, 2424, 2636 |
| EcoT22I | ATGCAT | 2 cut(s) | 1105, 2973 |
| EcoT38I | GRGCYC | 1 cut(s) | 2133 |
| ErhI | CCWWGG | 5 cut(s) | 869, 1540, 2088, 2424, 2636 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 563, 595, 1631, 1663 |
| FaqI | GGGAC | 1 cut(s) | 4132 |
| FauI | CCCGC | 2 cut(s) | 74, 1405 |
| FbaI | TGATCA | 3 cut(s) | 1602, 1612, 2026 |
| FblI | GTMKAC | 1 cut(s) | 3841 |
| FokI | GGATG | 7 cut(s) | 759, 1940, 2441, 2741, 2849, 3905, 4007 |
| FriOI | GRGCYC | 1 cut(s) | 2133 |
| FspBI | CTAG | 8 cut(s) | 1310, 2370, 2574, 3113, 3488, 3509, 3735, 3908 |
| GlaI | GCGC | 2 cut(s) | 2283, 2524 |
| GsaI | CCCAGC | 1 cut(s) | 2206 |
| GsuI | CTGGAG | 9 cut(s) | 390, 1362, 1670, 2385, 3282, 3310, 3606, 3849, 4305 |
| HaeII | RGCGCY | 1 cut(s) | 2526 |
| HaeIII | GGCC | 6 cut(s) | 1064, 1593, 1675, 3236, 3578, 4312 |
| HgaI | GACGC | 1 cut(s) | 2664 |
| HhaI | GCGC | 2 cut(s) | 2284, 2525 |
| Hin6I | GCGC | 2 cut(s) | 2282, 2523 |
| HinP1I | GCGC | 2 cut(s) | 2282, 2523 |
| HincII | GTYRAC | 7 cut(s) | 438, 820, 876, 952, 988, 1576, 3384 |
| HindII | GTYRAC | 7 cut(s) | 438, 820, 876, 952, 988, 1576, 3384 |
| HindIII | AAGCTT | 1 cut(s) | 503 |
| HpaI | GTTAAC | 1 cut(s) | 1576 |
| HphI | GGTGA | 5 cut(s) | 2624, 2935, 3094, 3733, 3838 |
| Hpy99I | CGWCG | 1 cut(s) | 1681 |
| HpyCH4III | ACNGT | 7 cut(s) | 362, 2054, 2106, 2509, 2612, 3079, 4114 |
| HpyCH4IV | ACGT | 8 cut(s) | 217, 1367, 2048, 2292, 2552, 3708, 3813, 4011 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 44, 1337, 2529, 3257, 3554, 3869, 4067 |
| HpySE526I | ACGT | 8 cut(s) | 217, 1367, 2048, 2292, 2552, 3708, 3813, 4011 |
| HspAI | GCGC | 2 cut(s) | 2282, 2523 |
| Kpn2I | TCCGGA | 1 cut(s) | 3313 |
| KroI | GCCGGC | 1 cut(s) | 77 |
| KroNI | GCCGGC | 1 cut(s) | 79 |
| Ksp22I | TGATCA | 3 cut(s) | 1602, 1612, 2026 |
| KspAI | GTTAAC | 1 cut(s) | 1576 |
| LweI | GCATC | 5 cut(s) | 286, 1318, 2980, 3268, 3520 |
| MaeI | CTAG | 8 cut(s) | 1310, 2370, 2574, 3113, 3488, 3509, 3735, 3908 |
| MaeII | ACGT | 8 cut(s) | 217, 1367, 2048, 2292, 2552, 3708, 3813, 4011 |
| MfeI | CAATTG | 4 cut(s) | 2661, 3255, 3984, 4137 |
| MhlI | GDGCHC | 3 cut(s) | 2133, 2552, 2824 |
| MlsI | TGGCCA | 1 cut(s) | 1593 |
| MluI | ACGCGT | 1 cut(s) | 1736 |
| MluNI | TGGCCA | 1 cut(s) | 1593 |
| MlyI | GAGTC | 9 cut(s) | 552, 1009, 1144, 1353, 1382, 2263, 3248, 3326, 3500 |
| MmeI | TCCRAC | 4 cut(s) | 1192, 2528, 3565, 3882 |
| Mox20I | TGGCCA | 1 cut(s) | 1593 |
| Mph1103I | ATGCAT | 2 cut(s) | 1105, 2973 |
| MreI | CGCCGGCG | 1 cut(s) | 77 |
| MroI | TCCGGA | 1 cut(s) | 3313 |
| MroNI | GCCGGC | 1 cut(s) | 77 |
| MroXI | GAANNNNTTC | 6 cut(s) | 129, 803, 1197, 2362, 2933, 3212 |
| MscI | TGGCCA | 1 cut(s) | 1593 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2276 |
| Msp20I | TGGCCA | 1 cut(s) | 1593 |
| MspA1I | CMGCKG | 4 cut(s) | 278, 3284, 3872, 3968 |
| MspCI | CTTAAG | 2 cut(s) | 916, 3199 |
| MunI | CAATTG | 4 cut(s) | 2661, 3255, 3984, 4137 |
| Mva1269I | GAATGC | 1 cut(s) | 2165 |
| MvaI | CCWGG | 5 cut(s) | 237, 1688, 1703, 2013, 2834 |
| MvnI | CGCG | 1 cut(s) | 1738 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 44, 1337, 2529, 3257, 3554, 3869, 4067 |
| NaeI | GCCGGC | 1 cut(s) | 79 |
| NciI | CCSGG | 5 cut(s) | 1822, 1984, 2139, 3339, 4151 |
| NcoI | CCATGG | 1 cut(s) | 2088 |
| NgoMIV | GCCGGC | 1 cut(s) | 77 |
| NlaIV | GGNNCC | 8 cut(s) | 861, 1291, 1692, 2625, 2634, 3312, 3615, 3864 |
| NmeAIII | GCCGAG | 2 cut(s) | 2890, 3262 |
| NmuCI | GTSAC | 4 cut(s) | 994, 2054, 3007, 3482 |
| NsiI | ATGCAT | 2 cut(s) | 1105, 2973 |
| NspI | RCATGY | 3 cut(s) | 986, 2494, 2902 |
| NspV | TTCGAA | 1 cut(s) | 2743 |
| PaeR7I | CTCGAG | 1 cut(s) | 66 |
| PagI | TCATGA | 2 cut(s) | 1605, 1621 |
| PaqCI | CACCTGC | 1 cut(s) | 3955 |
| PceI | AGGCCT | 1 cut(s) | 4312 |
| PciI | ACATGT | 1 cut(s) | 982 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 162, 1332 |
| PctI | GAATGC | 1 cut(s) | 2165 |
| PdiI | GCCGGC | 1 cut(s) | 79 |
| PdmI | GAANNNNTTC | 6 cut(s) | 129, 803, 1197, 2362, 2933, 3212 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1021 |
| PfoI | TCCNGGA | 1 cut(s) | 2832 |
| PinAI | ACCGGT | 1 cut(s) | 610 |
| Ple19I | CGATCG | 1 cut(s) | 93 |
| PleI | GAGTC | 9 cut(s) | 552, 1008, 1144, 1353, 1382, 2262, 3247, 3325, 3499 |
| PpsI | GAGTC | 9 cut(s) | 552, 1008, 1144, 1353, 1382, 2262, 3247, 3325, 3499 |
| Ppu21I | YACGTR | 2 cut(s) | 2049, 2293 |
| PscI | ACATGT | 1 cut(s) | 982 |
| PsiI | TTATAA | 2 cut(s) | 617, 1715 |
| Psp6I | CCWGG | 5 cut(s) | 235, 1686, 1701, 2011, 2832 |
| PspFI | CCCAGC | 1 cut(s) | 2202 |
| PspGI | CCWGG | 5 cut(s) | 235, 1686, 1701, 2011, 2832 |
| PspN4I | GGNNCC | 8 cut(s) | 861, 1291, 1692, 2625, 2634, 3312, 3615, 3864 |
| PspPI | GGNCC | 2 cut(s) | 1063, 3576 |
| PstI | CTGCAG | 1 cut(s) | 547 |
| PstNI | CAGNNNCTG | 3 cut(s) | 343, 3872, 3947 |
| PvuI | CGATCG | 1 cut(s) | 93 |
| PvuII | CAGCTG | 3 cut(s) | 3284, 3872, 3968 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2276 |
| Sau96I | GGNCC | 2 cut(s) | 1063, 3576 |
| ScaI | AGTACT | 1 cut(s) | 1883 |
| SchI | GAGTC | 9 cut(s) | 552, 1009, 1144, 1353, 1382, 2263, 3248, 3326, 3500 |
| SduI | GDGCHC | 3 cut(s) | 2133, 2552, 2824 |
| SfaNI | GCATC | 5 cut(s) | 286, 1318, 2980, 3268, 3520 |
| SfcI | CTRYAG | 5 cut(s) | 378, 543, 3372, 3387, 3549 |
| Sfr274I | CTCGAG | 1 cut(s) | 66 |
| SfuI | TTCGAA | 1 cut(s) | 2743 |
| SgrAI | CRCCGGYG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 66 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2276 |
| SmlI | CTYRAG | 6 cut(s) | 66, 560, 916, 1529, 3199, 3534 |
| SmoI | CTYRAG | 6 cut(s) | 66, 560, 916, 1529, 3199, 3534 |
| SnaBI | TACGTA | 1 cut(s) | 2049 |
| SseBI | AGGCCT | 1 cut(s) | 4312 |
| SspMI | CTAG | 8 cut(s) | 1310, 2370, 2574, 3113, 3488, 3509, 3735, 3908 |
| StuI | AGGCCT | 1 cut(s) | 4312 |
| StyI | CCWWGG | 5 cut(s) | 869, 1540, 2088, 2424, 2636 |
| TaaI | ACNGT | 7 cut(s) | 362, 2054, 2106, 2509, 2612, 3079, 4114 |
| TaiI | ACGT | 8 cut(s) | 220, 1370, 2051, 2295, 2555, 3711, 3816, 4014 |
| TatI | WGTACW | 3 cut(s) | 1881, 2509, 2693 |
| TauI | GCSGC | 6 cut(s) | 38, 77, 278, 1334, 2909, 4061 |
| TseFI | GTSAC | 4 cut(s) | 994, 2054, 3007, 3482 |
| Tsp45I | GTSAC | 4 cut(s) | 994, 2054, 3007, 3482 |
| TspGWI | ACGGA | 6 cut(s) | 128, 301, 504, 869, 2765, 4173 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1021 |
| Vha464I | CTTAAG | 2 cut(s) | 916, 3199 |
| VneI | GTGCAC | 1 cut(s) | 2820 |
| XapI | RAATTY | 5 cut(s) | 402, 527, 1234, 2788, 2933 |
| XceI | RCATGY | 3 cut(s) | 986, 2494, 2902 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2766 |
| XhoI | CTCGAG | 1 cut(s) | 66 |
| XmiI | GTMKAC | 1 cut(s) | 3841 |
| XmnI | GAANNNNTTC | 6 cut(s) | 129, 803, 1197, 2362, 2933, 3212 |
| XspI | CTAG | 8 cut(s) | 1310, 2370, 2574, 3113, 3488, 3509, 3735, 3908 |
| ZrmI | AGTACT | 1 cut(s) | 1883 |
| Zsp2I | ATGCAT | 2 cut(s) | 1105, 2973 |