Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 5 cut(s) | 1709, 1833, 2036, 2559, 2772 |
| AarI | CACCTGC | 2 cut(s) | 559, 3577 |
| AatII | GACGTC | 1 cut(s) | 327 |
| Acc36I | ACCTGC | 3 cut(s) | 559, 3577, 3854 |
| Acc65I | GGTACC | 1 cut(s) | 2330 |
| AccB1I | GGYRCC | 3 cut(s) | 491, 2330, 2614 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 68 |
| AccI | GTMKAC | 2 cut(s) | 348, 1559 |
| AciI | CCGC | 4 cut(s) | 270, 4040, 4301, 4330 |
| AcoI | YGGCCR | 3 cut(s) | 70, 1667, 4302 |
| AcsI | RAATTY | 9 cut(s) | 1243, 1683, 2777, 2930, 3018, 3029, 3050, 3439, 3856 |
| AcuI | CTGAAG | 4 cut(s) | 1286, 2907, 2945, 4296 |
| AcyI | GRCGYC | 2 cut(s) | 303, 324 |
| AdeI | CACNNNGTG | 1 cut(s) | 618 |
| AfeI | AGCGCT | 1 cut(s) | 43 |
| AflII | CTTAAG | 1 cut(s) | 1568 |
| AflIII | ACRYGT | 2 cut(s) | 141, 4116 |
| AgeI | ACCGGT | 1 cut(s) | 470 |
| AjiI | CACGTC | 2 cut(s) | 700, 1854 |
| AjnI | CCWGG | 6 cut(s) | 384, 641, 2128, 2627, 2906, 3132 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2807, 2839, 3062, 3094, 3477, 3509 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 497, 529 |
| Alw21I | GWGCWC | 5 cut(s) | 123, 2368, 2543, 3198, 3322 |
| Alw26I | GTCTC | 5 cut(s) | 282, 527, 911, 2562, 2714 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3641 |
| Ama87I | CYCGRG | 2 cut(s) | 116, 1769 |
| Aor51HI | AGCGCT | 1 cut(s) | 43 |
| AoxI | GGCC | 9 cut(s) | 70, 1667, 2811, 3237, 3387, 3624, 3921, 4096, 4302 |
| ApoI | RAATTY | 9 cut(s) | 1243, 1683, 2777, 2930, 3018, 3029, 3050, 3439, 3856 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3932, 3964 |
| AsiGI | ACCGGT | 1 cut(s) | 470 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 509, 3018, 3033, 3209 |
| Asp718I | GGTACC | 1 cut(s) | 2330 |
| AspLEI | GCGC | 4 cut(s) | 44, 2592, 3398, 4058 |
| AspS9I | GGNCC | 8 cut(s) | 639, 661, 784, 1818, 3238, 3363, 3388, 3921 |
| AsuC2I | CCSGG | 2 cut(s) | 231, 4141 |
| AsuHPI | GGTGA | 7 cut(s) | 374, 604, 2249, 2615, 3029, 3509, 4140 |
| AvaI | CYCGRG | 2 cut(s) | 116, 1769 |
| AvaII | GGWCC | 5 cut(s) | 639, 661, 784, 1818, 3363 |
| BalI | TGGCCA | 2 cut(s) | 72, 1669 |
| BamHI | GGATCC | 2 cut(s) | 2623, 2818 |
| BanI | GGYRCC | 3 cut(s) | 491, 2330, 2614 |
| BanII | GRGCYC | 2 cut(s) | 2543, 3198 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 230, 262 |
| BauI | CACGAG | 1 cut(s) | 1234 |
| BbsI | GAAGAC | 3 cut(s) | 470, 1220, 3236 |
| Bbv12I | GWGCWC | 5 cut(s) | 123, 2368, 2543, 3198, 3322 |
| BceAI | ACGGC | 2 cut(s) | 290, 499 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 67, 101 |
| BciT130I | CCWGG | 6 cut(s) | 386, 643, 2130, 2629, 2908, 3134 |
| BclI | TGATCA | 4 cut(s) | 1606, 1644, 2017, 2851 |
| BcnI | CCSGG | 2 cut(s) | 231, 4141 |
| BcoDI | GTCTC | 5 cut(s) | 282, 527, 911, 2562, 2714 |
| BfaI | CTAG | 7 cut(s) | 843, 1482, 3585, 3824, 3912, 4311, 4417 |
| BfmI | CTRYAG | 4 cut(s) | 1541, 2862, 3774, 4035 |
| BfoI | RGCGCY | 2 cut(s) | 45, 2593 |
| BfrI | CTTAAG | 1 cut(s) | 1568 |
| BfuAI | ACCTGC | 3 cut(s) | 559, 3577, 3854 |
| BglII | AGATCT | 1 cut(s) | 243 |
| BmcAI | AGTACT | 3 cut(s) | 2257, 2860, 3075 |
| Bme1390I | CCNGG | 8 cut(s) | 231, 386, 643, 2130, 2629, 2908, 3134, 4141 |
| Bme18I | GGWCC | 5 cut(s) | 639, 661, 784, 1818, 3363 |
| BmeT110I | CYCGRG | 2 cut(s) | 116, 1769 |
| BmgBI | CACGTC | 2 cut(s) | 700, 1854 |
| BmgT120I | GGNCC | 8 cut(s) | 639, 661, 784, 1818, 3238, 3363, 3388, 3921 |
| BmrFI | CCNGG | 8 cut(s) | 231, 386, 643, 2130, 2629, 2908, 3134, 4141 |
| BmrI | ACTGGG | 1 cut(s) | 2188 |
| BmsI | GCATC | 6 cut(s) | 731, 1312, 3466, 4031, 4187, 4390 |
| BmuI | ACTGGG | 1 cut(s) | 2188 |
| BpiI | GAAGAC | 3 cut(s) | 470, 1220, 3236 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2777, 2809 |
| BpmI | CTGGAG | 5 cut(s) | 384, 1356, 2994, 3524, 4278 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3576 |
| BpuMI | CCSGG | 2 cut(s) | 231, 4141 |
| BsaAI | YACGTR | 2 cut(s) | 144, 3323 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1611 |
| BsaHI | GRCGYC | 2 cut(s) | 303, 324 |
| BsaWI | WCCGGW | 2 cut(s) | 470, 4150 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 9, 39, 357, 383, 387, 413, 497, 527 |
| Bse118I | RCCGGY | 1 cut(s) | 470 |
| Bse3DI | GCAATG | 4 cut(s) | 1407, 1810, 2616, 2722 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1611 |
| BseBI | CCWGG | 6 cut(s) | 386, 643, 2130, 2629, 2908, 3134 |
| BseGI | GGATG | 6 cut(s) | 746, 870, 1327, 2425, 4178, 4268 |
| BseJI | GATNNNNATC | 1 cut(s) | 1611 |
| BseMI | GCAATG | 4 cut(s) | 1407, 1810, 2616, 2722 |
| BseMII | CTCAG | 8 cut(s) | 510, 591, 922, 2205, 3288, 3420, 3690, 4331 |
| BseRI | GAGGAG | 3 cut(s) | 404, 2723, 3542 |
| BseYI | CCCAGC | 3 cut(s) | 55, 3257, 3973 |
| Bsh1285I | CGRYCG | 2 cut(s) | 9, 159 |
| BshFI | GGCC | 9 cut(s) | 72, 1669, 2813, 3239, 3389, 3626, 3923, 4098, 4304 |
| BshNI | GGYRCC | 3 cut(s) | 491, 2330, 2614 |
| BshTI | ACCGGT | 1 cut(s) | 470 |
| BsiEI | CGRYCG | 2 cut(s) | 9, 159 |
| BsiHKAI | GWGCWC | 5 cut(s) | 123, 2368, 2543, 3198, 3322 |
| BsiHKCI | CYCGRG | 2 cut(s) | 116, 1769 |
| BsiSI | CCGG | 6 cut(s) | 231, 407, 471, 659, 4140, 4151 |
| BslFI | GGGAC | 4 cut(s) | 770, 1294, 1883, 3376 |
| BsmAI | GTCTC | 5 cut(s) | 282, 527, 911, 2562, 2714 |
| BsmFI | GGGAC | 4 cut(s) | 770, 1294, 1883, 3376 |
| BsmI | GAATGC | 2 cut(s) | 1045, 2218 |
| BsnI | GGCC | 9 cut(s) | 72, 1669, 2813, 3239, 3389, 3626, 3923, 4098, 4304 |
| BsoBI | CYCGRG | 2 cut(s) | 116, 1769 |
| Bsp1286I | GDGCHC | 5 cut(s) | 123, 2368, 2543, 3198, 3322 |
| Bsp1407I | TGTACA | 2 cut(s) | 237, 2008 |
| Bsp19I | CCATGG | 3 cut(s) | 297, 2079, 3351 |
| BspACI | CCGC | 4 cut(s) | 270, 4040, 4301, 4330 |
| BspANI | GGCC | 9 cut(s) | 72, 1669, 2813, 3239, 3389, 3626, 3923, 4098, 4304 |
| BspCNI | CTCAG | 8 cut(s) | 511, 592, 921, 2206, 3289, 3421, 3691, 4330 |
| BspHI | TCATGA | 1 cut(s) | 1615 |
| BspMAI | CTGCAG | 2 cut(s) | 1545, 4039 |
| BspMI | ACCTGC | 3 cut(s) | 559, 3577, 3854 |
| BspT107I | GGYRCC | 3 cut(s) | 491, 2330, 2614 |
| BspTI | CTTAAG | 1 cut(s) | 1568 |
| BsrDI | GCAATG | 4 cut(s) | 1407, 1810, 2616, 2722 |
| BsrFI | RCCGGY | 1 cut(s) | 470 |
| BsrGI | TGTACA | 2 cut(s) | 237, 2008 |
| BssAI | RCCGGY | 1 cut(s) | 470 |
| BssNAI | GTATAC | 1 cut(s) | 1560 |
| BssNI | GRCGYC | 2 cut(s) | 303, 324 |
| BssSI | CACGAG | 1 cut(s) | 1234 |
| BssT1I | CCWWGG | 9 cut(s) | 73, 297, 745, 860, 2079, 2814, 3234, 3351, 3449 |
| Bst1107I | GTATAC | 1 cut(s) | 1560 |
| Bst2BI | CACGAG | 1 cut(s) | 1234 |
| Bst2UI | CCWGG | 6 cut(s) | 386, 643, 2130, 2629, 2908, 3134 |
| Bst6I | CTCTTC | 7 cut(s) | 84, 1965, 2883, 3282, 4043, 4245, 4404 |
| BstACI | GRCGYC | 2 cut(s) | 303, 324 |
| BstAFI | CTTAAG | 1 cut(s) | 1568 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 127, 1412, 2189, 3572, 3641, 3770 |
| BstAUI | TGTACA | 2 cut(s) | 237, 2008 |
| BstBAI | YACGTR | 2 cut(s) | 144, 3323 |
| BstC8I | GCNNGC | 9 cut(s) | 113, 606, 835, 1413, 1947, 2594, 3748, 3762, 4334 |
| BstDSI | CCRYGG | 3 cut(s) | 297, 2079, 3351 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2161 |
| BstF5I | GGATG | 6 cut(s) | 746, 870, 1327, 2425, 4178, 4268 |
| BstH2I | RGCGCY | 2 cut(s) | 45, 2593 |
| BstHHI | GCGC | 4 cut(s) | 44, 2592, 3398, 4058 |
| BstMAI | GTCTC | 5 cut(s) | 282, 527, 911, 2562, 2714 |
| BstMCI | CGRYCG | 2 cut(s) | 9, 159 |
| BstNI | CCWGG | 6 cut(s) | 386, 643, 2130, 2629, 2908, 3134 |
| BstNSI | RCATGY | 1 cut(s) | 4120 |
| BstSCI | CCNGG | 8 cut(s) | 229, 384, 641, 2128, 2627, 2906, 3132, 4139 |
| BstSFI | CTRYAG | 4 cut(s) | 1541, 2862, 3774, 4035 |
| BstV2I | GAAGAC | 3 cut(s) | 470, 1220, 3236 |
| BstX2I | RGATCY | 6 cut(s) | 243, 255, 1163, 2623, 2818, 3469 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1739, 2201 |
| BstYI | RGATCY | 6 cut(s) | 243, 255, 1163, 2623, 2818, 3469 |
| BstZ17I | GTATAC | 1 cut(s) | 1560 |
| BsuRI | GGCC | 9 cut(s) | 72, 1669, 2813, 3239, 3389, 3626, 3923, 4098, 4304 |
| BtgI | CCRYGG | 3 cut(s) | 297, 2079, 3351 |
| BtrI | CACGTC | 2 cut(s) | 700, 1854 |
| BtsCI | GGATG | 6 cut(s) | 746, 870, 1327, 2425, 4178, 4268 |
| BtsI | GCAGTG | 1 cut(s) | 1673 |
| BveI | ACCTGC | 3 cut(s) | 559, 3577, 3854 |
| Cac8I | GCNNGC | 9 cut(s) | 113, 606, 835, 1413, 1947, 2594, 3748, 3762, 4334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3641 |
| CciI | TCATGA | 1 cut(s) | 1615 |
| CfoI | GCGC | 4 cut(s) | 44, 2592, 3398, 4058 |
| Cfr10I | RCCGGY | 1 cut(s) | 470 |
| Cfr13I | GGNCC | 8 cut(s) | 639, 661, 784, 1818, 3238, 3363, 3388, 3921 |
| CseI | GACGC | 2 cut(s) | 311, 4298 |
| CspAI | ACCGGT | 1 cut(s) | 470 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1792, 1827 |
| DraI | TTTAAA | 1 cut(s) | 2935 |
| DraIII | CACNNNGTG | 1 cut(s) | 618 |
| EaeI | YGGCCR | 3 cut(s) | 70, 1667, 4302 |
| Eam1104I | CTCTTC | 7 cut(s) | 84, 1965, 2883, 3282, 4043, 4245, 4404 |
| EarI | CTCTTC | 7 cut(s) | 84, 1965, 2883, 3282, 4043, 4245, 4404 |
| Ecl136II | GAGCTC | 2 cut(s) | 2541, 3196 |
| Eco130I | CCWWGG | 9 cut(s) | 73, 297, 745, 860, 2079, 2814, 3234, 3351, 3449 |
| Eco24I | GRGCYC | 2 cut(s) | 2543, 3198 |
| Eco32I | GATATC | 1 cut(s) | 2869 |
| Eco47I | GGWCC | 5 cut(s) | 639, 661, 784, 1818, 3363 |
| Eco47III | AGCGCT | 1 cut(s) | 43 |
| Eco53kI | GAGCTC | 2 cut(s) | 2541, 3196 |
| Eco57I | CTGAAG | 4 cut(s) | 1286, 2907, 2945, 4296 |
| Eco88I | CYCGRG | 2 cut(s) | 116, 1769 |
| EcoICRI | GAGCTC | 2 cut(s) | 2541, 3196 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2161 |
| EcoO109I | RGGNCCY | 3 cut(s) | 784, 3363, 3388 |
| EcoRI | GAATTC | 2 cut(s) | 2777, 3050 |
| EcoRII | CCWGG | 6 cut(s) | 384, 641, 2128, 2627, 2906, 3132 |
| EcoRV | GATATC | 1 cut(s) | 2869 |
| EcoT14I | CCWWGG | 9 cut(s) | 73, 297, 745, 860, 2079, 2814, 3234, 3351, 3449 |
| EcoT38I | GRGCYC | 2 cut(s) | 2543, 3198 |
| ErhI | CCWWGG | 9 cut(s) | 73, 297, 745, 860, 2079, 2814, 3234, 3351, 3449 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2153, 2185 |
| FaqI | GGGAC | 4 cut(s) | 770, 1294, 1883, 3376 |
| FbaI | TGATCA | 4 cut(s) | 1606, 1644, 2017, 2851 |
| FblI | GTMKAC | 2 cut(s) | 348, 1559 |
| FokI | GGATG | 6 cut(s) | 753, 877, 1334, 2432, 4165, 4255 |
| FriOI | GRGCYC | 2 cut(s) | 2543, 3198 |
| FspBI | CTAG | 7 cut(s) | 843, 1482, 3585, 3824, 3912, 4311, 4417 |
| GlaI | GCGC | 4 cut(s) | 43, 2591, 3397, 4057 |
| GsaI | CCCAGC | 3 cut(s) | 59, 3261, 3977 |
| GsuI | CTGGAG | 5 cut(s) | 384, 1356, 2994, 3524, 4278 |
| HaeII | RGCGCY | 2 cut(s) | 45, 2593 |
| HaeIII | GGCC | 9 cut(s) | 72, 1669, 2813, 3239, 3389, 3626, 3923, 4098, 4304 |
| HapII | CCGG | 6 cut(s) | 231, 407, 471, 659, 4140, 4151 |
| HgaI | GACGC | 2 cut(s) | 311, 4298 |
| HhaI | GCGC | 4 cut(s) | 44, 2592, 3398, 4058 |
| Hin1I | GRCGYC | 2 cut(s) | 303, 324 |
| Hin6I | GCGC | 4 cut(s) | 42, 2590, 3396, 4056 |
| HinP1I | GCGC | 4 cut(s) | 42, 2590, 3396, 4056 |
| HincII | GTYRAC | 3 cut(s) | 208, 265, 814 |
| HindII | GTYRAC | 3 cut(s) | 208, 265, 814 |
| HindIII | AAGCTT | 4 cut(s) | 497, 1313, 2030, 4103 |
| HpaI | GTTAAC | 1 cut(s) | 208 |
| HpaII | CCGG | 6 cut(s) | 231, 407, 471, 659, 4140, 4151 |
| HphI | GGTGA | 7 cut(s) | 374, 604, 2249, 2615, 3029, 3509, 4140 |
| Hpy99I | CGWCG | 3 cut(s) | 200, 329, 452 |
| HpyCH4IV | ACGT | 7 cut(s) | 143, 225, 324, 699, 984, 1853, 3322 |
| HpySE526I | ACGT | 7 cut(s) | 143, 225, 324, 699, 984, 1853, 3322 |
| Hsp92I | GRCGYC | 2 cut(s) | 303, 324 |
| HspAI | GCGC | 4 cut(s) | 42, 2590, 3396, 4056 |
| KflI | GGGWCCC | 1 cut(s) | 784 |
| KpnI | GGTACC | 1 cut(s) | 2334 |
| Ksp22I | TGATCA | 4 cut(s) | 1606, 1644, 2017, 2851 |
| KspAI | GTTAAC | 1 cut(s) | 208 |
| LweI | GCATC | 6 cut(s) | 731, 1312, 3466, 4031, 4187, 4390 |
| MaeI | CTAG | 7 cut(s) | 843, 1482, 3585, 3824, 3912, 4311, 4417 |
| MaeII | ACGT | 7 cut(s) | 143, 225, 324, 699, 984, 1853, 3322 |
| MaeIII | GTNAC | 8 cut(s) | 646, 911, 985, 2045, 2336, 3453, 4286, 4355 |
| MfeI | CAATTG | 3 cut(s) | 1938, 3264, 3357 |
| MflI | RGATCY | 6 cut(s) | 243, 255, 1163, 2623, 2818, 3469 |
| MhlI | GDGCHC | 5 cut(s) | 123, 2368, 2543, 3198, 3322 |
| MlsI | TGGCCA | 2 cut(s) | 72, 1669 |
| MluNI | TGGCCA | 2 cut(s) | 72, 1669 |
| MlyI | GAGTC | 7 cut(s) | 284, 2254, 2424, 2755, 2795, 3308, 4352 |
| MmeI | TCCRAC | 3 cut(s) | 157, 3223, 3700 |
| Mox20I | TGGCCA | 2 cut(s) | 72, 1669 |
| MroXI | GAANNNNTTC | 4 cut(s) | 509, 3018, 3033, 3209 |
| MscI | TGGCCA | 2 cut(s) | 72, 1669 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1437, 1737, 2235, 2267, 2361, 3350 |
| Msp20I | TGGCCA | 2 cut(s) | 72, 1669 |
| MspA1I | CMGCKG | 3 cut(s) | 3968, 4007, 4040 |
| MspCI | CTTAAG | 1 cut(s) | 1568 |
| MspI | CCGG | 6 cut(s) | 231, 407, 471, 659, 4140, 4151 |
| MspR9I | CCNGG | 8 cut(s) | 231, 386, 643, 2130, 2629, 2908, 3134, 4141 |
| MunI | CAATTG | 3 cut(s) | 1938, 3264, 3357 |
| Mva1269I | GAATGC | 2 cut(s) | 1045, 2218 |
| MvaI | CCWGG | 6 cut(s) | 386, 643, 2130, 2629, 2908, 3134 |
| NciI | CCSGG | 2 cut(s) | 231, 4141 |
| NcoI | CCATGG | 3 cut(s) | 297, 2079, 3351 |
| NmeAIII | GCCGAG | 1 cut(s) | 2362 |
| NmuCI | GTSAC | 6 cut(s) | 911, 985, 2045, 3453, 4286, 4355 |
| NspI | RCATGY | 1 cut(s) | 4120 |
| PaeR7I | CTCGAG | 1 cut(s) | 116 |
| PagI | TCATGA | 1 cut(s) | 1615 |
| PaqCI | CACCTGC | 2 cut(s) | 559, 3577 |
| PciI | ACATGT | 1 cut(s) | 4116 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 156 |
| PctI | GAATGC | 2 cut(s) | 1045, 2218 |
| PdmI | GAANNNNTTC | 4 cut(s) | 509, 3018, 3033, 3209 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 68 |
| PfoI | TCCNGGA | 1 cut(s) | 229 |
| PinAI | ACCGGT | 1 cut(s) | 470 |
| Ple19I | CGATCG | 2 cut(s) | 9, 159 |
| PleI | GAGTC | 7 cut(s) | 284, 2253, 2424, 2755, 2794, 3307, 4352 |
| PpsI | GAGTC | 7 cut(s) | 284, 2253, 2424, 2755, 2794, 3307, 4352 |
| Ppu21I | YACGTR | 2 cut(s) | 144, 3323 |
| PpuMI | RGGWCCY | 2 cut(s) | 784, 3363 |
| PscI | ACATGT | 1 cut(s) | 4116 |
| PsiI | TTATAA | 5 cut(s) | 1709, 1833, 2036, 2559, 2772 |
| Psp124BI | GAGCTC | 2 cut(s) | 2543, 3198 |
| Psp5II | RGGWCCY | 2 cut(s) | 784, 3363 |
| Psp6I | CCWGG | 6 cut(s) | 384, 641, 2128, 2627, 2906, 3132 |
| PspFI | CCCAGC | 3 cut(s) | 55, 3257, 3973 |
| PspGI | CCWGG | 6 cut(s) | 384, 641, 2128, 2627, 2906, 3132 |
| PspPI | GGNCC | 8 cut(s) | 639, 661, 784, 1818, 3238, 3363, 3388, 3921 |
| PspPPI | RGGWCCY | 2 cut(s) | 784, 3363 |
| PspXI | VCTCGAGB | 1 cut(s) | 116 |
| PstI | CTGCAG | 2 cut(s) | 1545, 4039 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3641 |
| PsuI | RGATCY | 6 cut(s) | 243, 255, 1163, 2623, 2818, 3469 |
| PvuI | CGATCG | 2 cut(s) | 9, 159 |
| PvuII | CAGCTG | 2 cut(s) | 3968, 4007 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1437, 1737, 2235, 2267, 2361, 3350 |
| SacI | GAGCTC | 2 cut(s) | 2543, 3198 |
| Sau96I | GGNCC | 8 cut(s) | 639, 661, 784, 1818, 3238, 3363, 3388, 3921 |
| ScaI | AGTACT | 3 cut(s) | 2257, 2860, 3075 |
| SchI | GAGTC | 7 cut(s) | 284, 2254, 2424, 2755, 2795, 3308, 4352 |
| ScrFI | CCNGG | 8 cut(s) | 231, 386, 643, 2130, 2629, 2908, 3134, 4141 |
| SduI | GDGCHC | 5 cut(s) | 123, 2368, 2543, 3198, 3322 |
| SfaNI | GCATC | 6 cut(s) | 731, 1312, 3466, 4031, 4187, 4390 |
| SfcI | CTRYAG | 4 cut(s) | 1541, 2862, 3774, 4035 |
| Sfr274I | CTCGAG | 1 cut(s) | 116 |
| SgrAI | CRCCGGYG | 1 cut(s) | 470 |
| SinI | GGWCC | 5 cut(s) | 639, 661, 784, 1818, 3363 |
| SlaI | CTCGAG | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1437, 1737, 2235, 2267, 2361, 3350 |
| SsiI | CCGC | 4 cut(s) | 270, 4040, 4301, 4330 |
| SspI | AATATT | 1 cut(s) | 1018 |
| SspMI | CTAG | 7 cut(s) | 843, 1482, 3585, 3824, 3912, 4311, 4417 |
| SstI | GAGCTC | 2 cut(s) | 2543, 3198 |
| StyD4I | CCNGG | 8 cut(s) | 229, 384, 641, 2128, 2627, 2906, 3132, 4139 |
| StyI | CCWWGG | 9 cut(s) | 73, 297, 745, 860, 2079, 2814, 3234, 3351, 3449 |
| TaiI | ACGT | 7 cut(s) | 146, 228, 327, 702, 987, 1856, 3325 |
| TaqI | TCGA | 9 cut(s) | 9, 87, 117, 155, 159, 249, 327, 531, 668 |
| TatI | WGTACW | 8 cut(s) | 237, 561, 1358, 2008, 2040, 2255, 2858, 3073 |
| TauI | GCSGC | 3 cut(s) | 272, 4043, 4304 |
| TseFI | GTSAC | 6 cut(s) | 911, 985, 2045, 3453, 4286, 4355 |
| Tsp45I | GTSAC | 6 cut(s) | 911, 985, 2045, 3453, 4286, 4355 |
| TspGWI | ACGGA | 6 cut(s) | 470, 2094, 2741, 3299, 3727, 4195 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 68 |
| Vha464I | CTTAAG | 1 cut(s) | 1568 |
| VpaK11BI | GGWCC | 5 cut(s) | 639, 661, 784, 1818, 3363 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2161 |
| XapI | RAATTY | 9 cut(s) | 1243, 1683, 2777, 2930, 3018, 3029, 3050, 3439, 3856 |
| XbaI | TCTAGA | 2 cut(s) | 842, 3584 |
| XceI | RCATGY | 1 cut(s) | 4120 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2625, 2754, 3456 |
| XhoI | CTCGAG | 1 cut(s) | 116 |
| XmiI | GTMKAC | 2 cut(s) | 348, 1559 |
| XmnI | GAANNNNTTC | 4 cut(s) | 509, 3018, 3033, 3209 |
| XspI | CTAG | 7 cut(s) | 843, 1482, 3585, 3824, 3912, 4311, 4417 |
| ZraI | GACGTC | 1 cut(s) | 325 |
| ZrmI | AGTACT | 3 cut(s) | 2257, 2860, 3075 |