Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006119.1

Orthogroup ID

OG0001532

Physical Location & Seq

Genomic Coordinates Reverse (-)

79970 .. 81128

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006119.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggtgcccatggatccttggtacagaggctttaccggaactactgagaaaactgttacagattctggcgtgtgctacagtacttgtgggatcataaagaaagaagatgagtcaacactcaggatttcggagctgccaattggtacttgcattaaagattatgtggaatttcttgactctatctcggaagtgaatggagaggccaaggatcattggattaaggattacgaagatttttcctacatagatgttgatattctcatccacttgtctgatactgtgaagagcttgacagaagccagtgaagaggatctgtgtaagaagtttaaactgacaagtagcagaagcataagtgagatgcacctgtttgatccaacaggcgagattaagaaatatgacactccagaacaaattcttgaggaattttttcatctaagactccaattctatgagaaaagaaagacagtactattgcttatccttagatcggagttgtcaaatttggaaaacaaggttgcacttatgcgtggtgtctttgatggaggagtggtcgacttcaataaacttagcactgatccgtacctaaaaagcatgccaattactacgtttgtctacagagacagttatcaagaaaagttgcaagaattattggctgatatagatacgatcaaactgaagattaaaaagttggaaggttcaactccgaggacattgtggttggaggagcttgctgctcttgaacaggaacttgataagctggagaagcacaagctgttggaggaactagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 map01524

Pfam Domains

Protein Families

DNA_gyraseB DNA_topoisoIV HATPase_c TOPRIM_C Toprim

Protein Analysis

263

Amino Acids

30.39

Weight (kDa)

4.84

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23890 AT3G23890
fragaria_vesca	FvH4_3g01730 FvH4_7g01280 FvH4_7g01280
malus_domestica	MD02G1308000.v1.1 MD07G1017700.v1.1
prunus_persica	Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1
pyrus_communis	pycom02g25940 pycom07g01350
rosa_chinensis	RchiOBHm_Chr1g0317031 RchiOBHm_Chr1g0375001 RchiOBHm_Chr1g0380651 RchiOBHm_Chr1g0380661
rosa_laevigata	RLG00000026278 RLG00000026698 RLG00000030631
rosa_multiflora	Rmu_co7960381.1_g000001 Rmu_sc0000554.1_g000003 Rmu_sc0006119.1_g000015 Rmu_sc0006455.1_g000003 Rmu_sc0017099.1_g000004 Rmu_sc0018727.1_g000001 Rmu_sc0023311.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283090 Rroxscaffold_4G00330720
rosa_rugosa	Rorug01G0013900 Rorug01G0387100 Rorug01G0387200 Rorug01G0387300 Rorug01G0423300 Rorug01G0423400 Rorug01G0423400
rosa_samantha	Rh1AG025100 Rh1AG398000 Rh1AG447700 Rh1BG021900 Rh1BG361900 Rh1BG403000 Rh1CG023500 Rh1CG375600 Rh1CG417400 Rh1DG022300 Rh1DG393100 Rh1DG433300
rosa_wichuraiana	Rw1G001740 Rw1G035320 Rw1G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	2 cut(s)	552, 612
AclWI	GGATC	7 cut(s)	8, 21, 98, 216, 318, 365, 569
AcsI	RAATTY	4 cut(s)	167, 411, 422, 499
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	5 cut(s)	23, 82, 145, 468, 581
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	559, 699, 740
AluBI	AGCT	5 cut(s)	133, 288, 727, 757, 772
AluI	AGCT	5 cut(s)	133, 288, 727, 757, 772
Alw26I	GTCTC	1 cut(s)	612
AlwI	GGATC	7 cut(s)	8, 21, 98, 216, 318, 365, 569
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	133, 731
ApoI	RAATTY	4 cut(s)	167, 411, 422, 499
Asp700I	GAANNNNTTC	2 cut(s)	411, 426
BaeGI	GKGCMC	1 cut(s)	9
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	120, 718
BccI	CCATC	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	2 cut(s)	76, 613
BisI	GCNGC	2 cut(s)	134, 732
BlsI	GCNGC	2 cut(s)	135, 733
BmcAI	AGTACT	2 cut(s)	82, 468
BmiI	GGNNCC	2 cut(s)	6, 15
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	387, 779
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	4 cut(s)	9, 17, 204, 704
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	9, 17, 204, 704
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	36, 133
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	558, 737
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	120, 718
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	37, 132
BspLI	GGNNCC	2 cut(s)	6, 15
BspPI	GGATC	7 cut(s)	8, 21, 98, 216, 318, 365, 569
BspQI	GCTCTTC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	4 cut(s)	9, 17, 204, 704
BssMI	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
BssT1I	CCWWGG	3 cut(s)	9, 17, 204
Bst4CI	ACNGT	5 cut(s)	55, 80, 280, 466, 623
Bst6I	CTCTTC	2 cut(s)	278, 300
BstC8I	GCNNGC	2 cut(s)	593, 729
BstDEI	CTNAG	5 cut(s)	45, 119, 434, 482, 566
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	8 cut(s)	16, 93, 211, 313, 373, 488, 577, 669
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	763
BstNSI	RCATGY	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	76, 613
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	120, 718
BstX2I	RGATCY	2 cut(s)	13, 310
BstYI	RGATCY	2 cut(s)	13, 310
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	307, 570
Cac8I	GCNNGC	2 cut(s)	593, 729
CaiI	CAGNNNCTG	1 cut(s)	65
Csp6I	GTAC	5 cut(s)	22, 81, 144, 467, 580
CviAII	CATG	2 cut(s)	10, 592
CviJI	RGCY	9 cut(s)	30, 133, 203, 288, 299, 653, 727, 757, 772
CviKI_1	RGCY	9 cut(s)	30, 133, 203, 288, 299, 653, 727, 757, 772
CviQI	GTAC	5 cut(s)	22, 81, 144, 467, 580
DdeI	CTNAG	5 cut(s)	45, 119, 434, 482, 566
DpnI	GATC	8 cut(s)	15, 92, 210, 312, 372, 487, 576, 668
DpnII	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
DraI	TTTAAA	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	278, 300
EarI	CTCTTC	2 cut(s)	278, 300
Eco130I	CCWWGG	3 cut(s)	9, 17, 204
Eco57I	CTGAAG	1 cut(s)	695
EcoT14I	CCWWGG	3 cut(s)	9, 17, 204
ErhI	CCWWGG	3 cut(s)	9, 17, 204
FaeI	CATG	2 cut(s)	13, 595
FatI	CATG	2 cut(s)	9, 591
FblI	GTMKAC	2 cut(s)	552, 612
Fnu4HI	GCNGC	2 cut(s)	134, 732
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	134, 732
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	2 cut(s)	134, 732
GsuI	CTGGAG	2 cut(s)	387, 779
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	13, 595
HincII	GTYRAC	2 cut(s)	114, 553
HindII	GTYRAC	2 cut(s)	114, 553
HinfI	GANTC	4 cut(s)	62, 110, 176, 438
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	114, 553, 613
Hpy188I	TCNGA	5 cut(s)	130, 187, 274, 490, 705
Hpy188III	TCNNGA	6 cut(s)	121, 173, 404, 416, 629, 737
Hpy8I	GTNNAC	3 cut(s)	114, 553, 613
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	5 cut(s)	55, 80, 280, 466, 623
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	150, 361, 518, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	763
HpyF3I	CTNAG	5 cut(s)	45, 119, 434, 482, 566
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	2 cut(s)	13, 595
Kzo9I	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	130, 724
LpnPI	CCDG	9 cut(s)	49, 51, 106, 313, 363, 377, 417, 728, 743
Lsp1109I	GCAGC	2 cut(s)	120, 718
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	8 cut(s)	15, 92, 210, 312, 372, 487, 576, 668
MboI	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
MboII	GAAGA	5 cut(s)	116, 242, 295, 317, 688
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	2 cut(s)	13, 310
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	8 cut(s)	138, 167, 411, 422, 443, 499, 597, 644
MlyI	GAGTC	3 cut(s)	119, 170, 432
MmeI	TCCRAC	4 cut(s)	398, 669, 699, 756
MnlI	CCTC	8 cut(s)	20, 193, 301, 412, 536, 699, 715, 772
MroXI	GAANNNNTTC	2 cut(s)	411, 426
MseI	TTAA	5 cut(s)	153, 219, 327, 387, 681
MspI	CCGG	1 cut(s)	36
MssI	GTTTAAAC	1 cut(s)	328
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
NlaIII	CATG	2 cut(s)	13, 595
NlaIV	GGNNCC	2 cut(s)	6, 15
NspI	RCATGY	1 cut(s)	595
PaeI	GCATGC	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	278
PdmI	GAANNNNTTC	2 cut(s)	411, 426
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	135, 733
PleI	GAGTC	3 cut(s)	118, 170, 432
PmeI	GTTTAAAC	1 cut(s)	328
PpsI	GAGTC	3 cut(s)	118, 170, 432
PspN4I	GGNNCC	2 cut(s)	6, 15
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	13, 310
RsaI	GTAC	5 cut(s)	23, 82, 145, 468, 581
RsaNI	GTAC	5 cut(s)	22, 81, 144, 467, 580
SalI	GTCGAC	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	5 cut(s)	153, 219, 327, 387, 681
SatI	GCNGC	2 cut(s)	134, 732
Sau3AI	GATC	8 cut(s)	13, 90, 208, 310, 370, 485, 574, 666
ScaI	AGTACT	2 cut(s)	82, 468
SchI	GAGTC	3 cut(s)	119, 170, 432
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	2 cut(s)	76, 613
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SphI	GCATGC	1 cut(s)	595
Sse9I	AATT	8 cut(s)	138, 167, 411, 422, 443, 499, 597, 644
SspMI	CTAG	1 cut(s)	785
StyI	CCWWGG	3 cut(s)	9, 17, 204
TaaI	ACNGT	5 cut(s)	55, 80, 280, 466, 623
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	1 cut(s)	552
TasI	AATT	8 cut(s)	138, 167, 411, 422, 443, 499, 597, 644
TatI	WGTACW	2 cut(s)	80, 466
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	5 cut(s)	153, 219, 327, 387, 681
Tru9I	TTAA	5 cut(s)	153, 219, 327, 387, 681
TscAI	CASTG	2 cut(s)	307, 577
TseI	GCWGC	2 cut(s)	133, 731
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	307, 577
XapI	RAATTY	4 cut(s)	167, 411, 422, 499
XceI	RCATGY	1 cut(s)	595
XmiI	GTMKAC	2 cut(s)	552, 612
XmnI	GAANNNNTTC	2 cut(s)	411, 426
XspI	CTAG	1 cut(s)	785
ZrmI	AGTACT	2 cut(s)	82, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.