Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c | PF02518 | 81 - 173 | 3.9e-07 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| DNA_gyraseB | PF00204 | 271 - 427 | 7.7e-24 | DNA gyrase B |
| Toprim | PF01751 | 457 - 556 | 4.1e-08 | Toprim domain |
| TOPRIM_C | PF16898 | 572 - 699 | 8.7e-51 | C-terminal associated domain of TOPRIM |
| DNA_topoisoIV | PF00521 | 702 - 1161 | 7.8e-119 | DNA gyrase/topoisomerase IV, subunit A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1842, 2568, 2781 |
| AarI | CACCTGC | 1 cut(s) | 568 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2882 |
| AatII | GACGTC | 2 cut(s) | 336, 2735 |
| Acc36I | ACCTGC | 3 cut(s) | 568, 2106, 3578 |
| Acc65I | GGTACC | 1 cut(s) | 2339 |
| AccB1I | GGYRCC | 4 cut(s) | 432, 500, 2339, 2623 |
| AccBSI | CCGCTC | 1 cut(s) | 3188 |
| AccI | GTMKAC | 5 cut(s) | 195, 357, 408, 1568, 2874 |
| AcoI | YGGCCR | 3 cut(s) | 744, 1676, 4218 |
| AcsI | RAATTY | 9 cut(s) | 264, 1252, 1354, 1692, 2786, 2939, 3027, 3059, 3718 |
| AcuI | CTGAAG | 4 cut(s) | 1295, 2826, 2954, 4140 |
| AcyI | GRCGYC | 3 cut(s) | 333, 501, 2732 |
| AdeI | CACNNNGTG | 1 cut(s) | 627 |
| AflII | CTTAAG | 1 cut(s) | 1577 |
| AflIII | ACRYGT | 2 cut(s) | 3960, 4191 |
| AgeI | ACCGGT | 1 cut(s) | 479 |
| AjiI | CACGTC | 1 cut(s) | 1863 |
| AjnI | CCWGG | 6 cut(s) | 393, 650, 2011, 2137, 2636, 3983 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2816, 2848, 3071, 3103 |
| AleI | CACNNNNGTG | 2 cut(s) | 2244, 2892 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 506, 538 |
| Alw21I | GWGCWC | 4 cut(s) | 2377, 2552, 3207, 3331 |
| Alw26I | GTCTC | 6 cut(s) | 536, 920, 1383, 2571, 2723, 3714 |
| Ama87I | CYCGRG | 2 cut(s) | 181, 3560 |
| AoxI | GGCC | 7 cut(s) | 241, 744, 1676, 3396, 3420, 3940, 4218 |
| ApoI | RAATTY | 9 cut(s) | 264, 1252, 1354, 1692, 2786, 2939, 3027, 3059, 3718 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 255, 287, 3756, 3782, 3788, 3814 |
| AsiGI | ACCGGT | 1 cut(s) | 479 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3027, 3218 |
| Asp718I | GGTACC | 1 cut(s) | 2339 |
| AspLEI | GCGC | 4 cut(s) | 371, 503, 613, 3823 |
| AspS9I | GGNCC | 9 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3397, 3590, 3742 |
| AsuC2I | CCSGG | 2 cut(s) | 240, 416 |
| AvaI | CYCGRG | 2 cut(s) | 181, 3560 |
| AvaII | GGWCC | 8 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3590, 3742 |
| BaeGI | GKGCMC | 1 cut(s) | 435 |
| BalI | TGGCCA | 1 cut(s) | 1678 |
| BamHI | GGATCC | 2 cut(s) | 2632, 2827 |
| BanI | GGYRCC | 4 cut(s) | 432, 500, 2339, 2623 |
| BanII | GRGCYC | 2 cut(s) | 2552, 3207 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 239, 271 |
| BauI | CACGAG | 1 cut(s) | 2965 |
| BbsI | GAAGAC | 2 cut(s) | 479, 1229 |
| Bbv12I | GWGCWC | 4 cut(s) | 2377, 2552, 3207, 3331 |
| BbvCI | CCTCAGC | 1 cut(s) | 3429 |
| BceAI | ACGGC | 2 cut(s) | 514, 561 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 76, 110, 2956, 2990, 4223, 4257 |
| BciT130I | CCWGG | 6 cut(s) | 395, 652, 2013, 2139, 2638, 3985 |
| BclI | TGATCA | 2 cut(s) | 2026, 2860 |
| BcnI | CCSGG | 2 cut(s) | 240, 416 |
| BcoDI | GTCTC | 6 cut(s) | 536, 920, 1383, 2571, 2723, 3714 |
| BfaI | CTAG | 3 cut(s) | 1491, 3251, 4185 |
| BfmI | CTRYAG | 2 cut(s) | 1550, 2871 |
| BfoI | RGCGCY | 2 cut(s) | 372, 504 |
| BfrI | CTTAAG | 1 cut(s) | 1577 |
| BfuAI | ACCTGC | 3 cut(s) | 568, 2106, 3578 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3404 |
| BglII | AGATCT | 1 cut(s) | 252 |
| BmcAI | AGTACT | 2 cut(s) | 2266, 2869 |
| Bme1390I | CCNGG | 8 cut(s) | 240, 395, 416, 652, 2013, 2139, 2638, 3985 |
| Bme18I | GGWCC | 8 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3590, 3742 |
| BmeT110I | CYCGRG | 2 cut(s) | 181, 3560 |
| BmgBI | CACGTC | 1 cut(s) | 1863 |
| BmgT120I | GGNCC | 9 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3397, 3590, 3742 |
| BmrFI | CCNGG | 8 cut(s) | 240, 395, 416, 652, 2013, 2139, 2638, 3985 |
| BmrI | ACTGGG | 1 cut(s) | 2197 |
| BmuI | ACTGGG | 1 cut(s) | 2197 |
| BpiI | GAAGAC | 2 cut(s) | 479, 1229 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 329, 361, 844, 876, 2786, 2818 |
| BpmI | CTGGAG | 6 cut(s) | 146, 393, 2034, 3003, 3533, 4122 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1398, 3429, 3996 |
| BpuEI | CTTGAG | 7 cut(s) | 1346, 2757, 2813, 3053, 3119, 3221, 3689 |
| BpuMI | CCSGG | 2 cut(s) | 240, 416 |
| BsaAI | YACGTR | 1 cut(s) | 4192 |
| BsaHI | GRCGYC | 3 cut(s) | 333, 501, 2732 |
| BsaWI | WCCGGW | 1 cut(s) | 479 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 9, 39, 366, 396 |
| Bse118I | RCCGGY | 2 cut(s) | 479, 4216 |
| Bse1I | ACTGG | 8 cut(s) | 444, 614, 650, 1572, 2203, 2659, 4139, 4221 |
| Bse3DI | GCAATG | 4 cut(s) | 496, 1416, 1819, 2625 |
| BseBI | CCWGG | 6 cut(s) | 395, 652, 2013, 2139, 2638, 3985 |
| BseGI | GGATG | 4 cut(s) | 755, 1336, 2283, 2434 |
| BseMI | GCAATG | 4 cut(s) | 496, 1416, 1819, 2625 |
| BseNI | ACTGG | 8 cut(s) | 444, 614, 650, 1572, 2203, 2659, 4139, 4221 |
| BseRI | GAGGAG | 4 cut(s) | 413, 2912, 3551, 3597 |
| BseSI | GKGCMC | 1 cut(s) | 435 |
| BseYI | CCCAGC | 1 cut(s) | 58 |
| Bsh1285I | CGRYCG | 2 cut(s) | 9, 168 |
| BshFI | GGCC | 7 cut(s) | 243, 746, 1678, 3398, 3422, 3942, 4220 |
| BshNI | GGYRCC | 4 cut(s) | 432, 500, 2339, 2623 |
| BshTI | ACCGGT | 1 cut(s) | 479 |
| BsiEI | CGRYCG | 2 cut(s) | 9, 168 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2377, 2552, 3207, 3331 |
| BsiHKCI | CYCGRG | 2 cut(s) | 181, 3560 |
| BsiSI | CCGG | 6 cut(s) | 240, 416, 480, 747, 843, 4217 |
| BslFI | GGGAC | 6 cut(s) | 398, 779, 1659, 1892, 2551, 3385 |
| BsmAI | GTCTC | 6 cut(s) | 536, 920, 1383, 2571, 2723, 3714 |
| BsmBI | CGTCTC | 3 cut(s) | 536, 2723, 3714 |
| BsmFI | GGGAC | 6 cut(s) | 398, 779, 1659, 1892, 2551, 3385 |
| BsmI | GAATGC | 3 cut(s) | 561, 1054, 2227 |
| BsnI | GGCC | 7 cut(s) | 243, 746, 1678, 3398, 3422, 3942, 4220 |
| BsoBI | CYCGRG | 2 cut(s) | 181, 3560 |
| Bsp1286I | GDGCHC | 5 cut(s) | 435, 2377, 2552, 3207, 3331 |
| Bsp1407I | TGTACA | 1 cut(s) | 246 |
| Bsp19I | CCATGG | 4 cut(s) | 306, 2088, 2242, 3360 |
| BspANI | GGCC | 7 cut(s) | 243, 746, 1678, 3398, 3422, 3942, 4220 |
| BspMAI | CTGCAG | 1 cut(s) | 1554 |
| BspMI | ACCTGC | 3 cut(s) | 568, 2106, 3578 |
| BspQI | GCTCTTC | 1 cut(s) | 110 |
| BspT107I | GGYRCC | 4 cut(s) | 432, 500, 2339, 2623 |
| BspTI | CTTAAG | 1 cut(s) | 1577 |
| BsrBI | CCGCTC | 1 cut(s) | 3188 |
| BsrDI | GCAATG | 4 cut(s) | 496, 1416, 1819, 2625 |
| BsrFI | RCCGGY | 2 cut(s) | 479, 4216 |
| BsrGI | TGTACA | 1 cut(s) | 246 |
| BsrI | ACTGG | 8 cut(s) | 444, 614, 650, 1572, 2203, 2659, 4139, 4221 |
| BssAI | RCCGGY | 2 cut(s) | 479, 4216 |
| BssNAI | GTATAC | 1 cut(s) | 1569 |
| BssNI | GRCGYC | 3 cut(s) | 333, 501, 2732 |
| BssSI | CACGAG | 1 cut(s) | 2965 |
| BssT1I | CCWWGG | 7 cut(s) | 306, 2088, 2242, 2823, 3142, 3360, 3458 |
| Bst1107I | GTATAC | 1 cut(s) | 1569 |
| Bst2BI | CACGAG | 1 cut(s) | 2965 |
| Bst2UI | CCWGG | 6 cut(s) | 395, 652, 2013, 2139, 2638, 3985 |
| Bst6I | CTCTTC | 4 cut(s) | 110, 1974, 3291, 3890 |
| BstACI | GRCGYC | 3 cut(s) | 333, 501, 2732 |
| BstAFI | CTTAAG | 1 cut(s) | 1577 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 136, 2198 |
| BstAUI | TGTACA | 1 cut(s) | 246 |
| BstBAI | YACGTR | 1 cut(s) | 4192 |
| BstC8I | GCNNGC | 7 cut(s) | 122, 1422, 1956, 3727, 3972, 4178, 4218 |
| BstDSI | CCRYGG | 4 cut(s) | 306, 2088, 2242, 3360 |
| BstF5I | GGATG | 4 cut(s) | 755, 1336, 2283, 2434 |
| BstH2I | RGCGCY | 2 cut(s) | 372, 504 |
| BstHHI | GCGC | 4 cut(s) | 371, 503, 613, 3823 |
| BstMAI | GTCTC | 6 cut(s) | 536, 920, 1383, 2571, 2723, 3714 |
| BstMCI | CGRYCG | 2 cut(s) | 9, 168 |
| BstNI | CCWGG | 6 cut(s) | 395, 652, 2013, 2139, 2638, 3985 |
| BstNSI | RCATGY | 1 cut(s) | 3964 |
| BstSCI | CCNGG | 8 cut(s) | 238, 393, 414, 650, 2011, 2137, 2636, 3983 |
| BstSFI | CTRYAG | 2 cut(s) | 1550, 2871 |
| BstSLI | GKGCMC | 1 cut(s) | 435 |
| BstV2I | GAAGAC | 2 cut(s) | 479, 1229 |
| BstX2I | RGATCY | 8 cut(s) | 252, 298, 1172, 2632, 2827, 3190, 3478, 3556 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 595, 2210 |
| BstYI | RGATCY | 8 cut(s) | 252, 298, 1172, 2632, 2827, 3190, 3478, 3556 |
| BstZ17I | GTATAC | 1 cut(s) | 1569 |
| BsuRI | GGCC | 7 cut(s) | 243, 746, 1678, 3398, 3422, 3942, 4220 |
| BtgI | CCRYGG | 4 cut(s) | 306, 2088, 2242, 3360 |
| BtgZI | GCGATG | 1 cut(s) | 1665 |
| BtrI | CACGTC | 1 cut(s) | 1863 |
| BtsCI | GGATG | 4 cut(s) | 755, 1336, 2283, 2434 |
| BtsI | GCAGTG | 2 cut(s) | 2514, 2697 |
| BtsIMutI | CAGTG | 7 cut(s) | 525, 2059, 2514, 2697, 2731, 2863, 4228 |
| BveI | ACCTGC | 3 cut(s) | 568, 2106, 3578 |
| Cac8I | GCNNGC | 7 cut(s) | 122, 1422, 1956, 3727, 3972, 4178, 4218 |
| CfoI | GCGC | 4 cut(s) | 371, 503, 613, 3823 |
| Cfr10I | RCCGGY | 2 cut(s) | 479, 4216 |
| Cfr13I | GGNCC | 9 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3397, 3590, 3742 |
| CseI | GACGC | 2 cut(s) | 343, 495 |
| CspAI | ACCGGT | 1 cut(s) | 479 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1801, 1836 |
| DinI | GGCGCC | 1 cut(s) | 502 |
| DraI | TTTAAA | 2 cut(s) | 1258, 2944 |
| DraIII | CACNNNGTG | 1 cut(s) | 627 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2882 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2882 |
| EaeI | YGGCCR | 3 cut(s) | 744, 1676, 4218 |
| Eam1104I | CTCTTC | 4 cut(s) | 110, 1974, 3291, 3890 |
| EarI | CTCTTC | 4 cut(s) | 110, 1974, 3291, 3890 |
| EciI | GGCGGA | 2 cut(s) | 90, 563 |
| Ecl136II | GAGCTC | 2 cut(s) | 2550, 3205 |
| Eco130I | CCWWGG | 7 cut(s) | 306, 2088, 2242, 2823, 3142, 3360, 3458 |
| Eco24I | GRGCYC | 2 cut(s) | 2552, 3207 |
| Eco47I | GGWCC | 8 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3590, 3742 |
| Eco53kI | GAGCTC | 2 cut(s) | 2550, 3205 |
| Eco57I | CTGAAG | 4 cut(s) | 1295, 2826, 2954, 4140 |
| Eco88I | CYCGRG | 2 cut(s) | 181, 3560 |
| EcoICRI | GAGCTC | 2 cut(s) | 2550, 3205 |
| EcoO109I | RGGNCCY | 4 cut(s) | 793, 3094, 3372, 3397 |
| EcoRI | GAATTC | 2 cut(s) | 2786, 3059 |
| EcoRII | CCWGG | 6 cut(s) | 393, 650, 2011, 2137, 2636, 3983 |
| EcoT14I | CCWWGG | 7 cut(s) | 306, 2088, 2242, 2823, 3142, 3360, 3458 |
| EcoT38I | GRGCYC | 2 cut(s) | 2552, 3207 |
| EgeI | GGCGCC | 1 cut(s) | 502 |
| EheI | GGCGCC | 1 cut(s) | 502 |
| ErhI | CCWWGG | 7 cut(s) | 306, 2088, 2242, 2823, 3142, 3360, 3458 |
| Esp3I | CGTCTC | 3 cut(s) | 536, 2723, 3714 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2141, 2173, 2162, 2194, 3511, 3543, 3669, 3701 |
| FaqI | GGGAC | 6 cut(s) | 398, 779, 1659, 1892, 2551, 3385 |
| FauI | CCCGC | 2 cut(s) | 1408, 3979 |
| FbaI | TGATCA | 2 cut(s) | 2026, 2860 |
| FblI | GTMKAC | 5 cut(s) | 195, 357, 408, 1568, 2874 |
| FokI | GGATG | 4 cut(s) | 762, 1343, 2290, 2441 |
| FriOI | GRGCYC | 2 cut(s) | 2552, 3207 |
| FspBI | CTAG | 3 cut(s) | 1491, 3251, 4185 |
| GlaI | GCGC | 4 cut(s) | 370, 502, 612, 3822 |
| GsaI | CCCAGC | 1 cut(s) | 62 |
| GsuI | CTGGAG | 6 cut(s) | 146, 393, 2034, 3003, 3533, 4122 |
| HaeII | RGCGCY | 2 cut(s) | 372, 504 |
| HaeIII | GGCC | 7 cut(s) | 243, 746, 1678, 3398, 3422, 3942, 4220 |
| HapII | CCGG | 6 cut(s) | 240, 416, 480, 747, 843, 4217 |
| HgaI | GACGC | 2 cut(s) | 343, 495 |
| HhaI | GCGC | 4 cut(s) | 371, 503, 613, 3823 |
| Hin1I | GRCGYC | 3 cut(s) | 333, 501, 2732 |
| Hin6I | GCGC | 4 cut(s) | 369, 501, 611, 3821 |
| HinP1I | GCGC | 4 cut(s) | 369, 501, 611, 3821 |
| HincII | GTYRAC | 3 cut(s) | 217, 274, 823 |
| HindII | GTYRAC | 3 cut(s) | 217, 274, 823 |
| HindIII | AAGCTT | 4 cut(s) | 506, 1322, 2039, 3947 |
| HpaII | CCGG | 6 cut(s) | 240, 416, 480, 747, 843, 4217 |
| Hpy99I | CGWCG | 5 cut(s) | 263, 338, 461, 926, 3794 |
| HpyCH4IV | ACGT | 6 cut(s) | 234, 333, 411, 1862, 2732, 4191 |
| HpySE526I | ACGT | 6 cut(s) | 234, 333, 411, 1862, 2732, 4191 |
| Hsp92I | GRCGYC | 3 cut(s) | 333, 501, 2732 |
| HspAI | GCGC | 4 cut(s) | 369, 501, 611, 3821 |
| KasI | GGCGCC | 1 cut(s) | 500 |
| KflI | GGGWCCC | 1 cut(s) | 793 |
| KpnI | GGTACC | 1 cut(s) | 2343 |
| KroI | GCCGGC | 1 cut(s) | 4216 |
| KroNI | GCCGGC | 1 cut(s) | 4218 |
| Ksp22I | TGATCA | 2 cut(s) | 2026, 2860 |
| LguI | GCTCTTC | 1 cut(s) | 110 |
| MaeI | CTAG | 3 cut(s) | 1491, 3251, 4185 |
| MaeII | ACGT | 6 cut(s) | 234, 333, 411, 1862, 2732, 4191 |
| MaeIII | GTNAC | 8 cut(s) | 322, 655, 994, 2054, 2345, 2733, 3338, 4199 |
| MbiI | CCGCTC | 1 cut(s) | 3188 |
| MfeI | CAATTG | 2 cut(s) | 1947, 3366 |
| MflI | RGATCY | 8 cut(s) | 252, 298, 1172, 2632, 2827, 3190, 3478, 3556 |
| MhlI | GDGCHC | 5 cut(s) | 435, 2377, 2552, 3207, 3331 |
| MlsI | TGGCCA | 1 cut(s) | 1678 |
| MluNI | TGGCCA | 1 cut(s) | 1678 |
| Mly113I | GGCGCC | 1 cut(s) | 501 |
| MlyI | GAGTC | 9 cut(s) | 305, 922, 1385, 1641, 2263, 2690, 2764, 2804, 4196 |
| MmeI | TCCRAC | 4 cut(s) | 166, 3084, 3232, 4257 |
| Mox20I | TGGCCA | 1 cut(s) | 1678 |
| MroNI | GCCGGC | 1 cut(s) | 4216 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3027, 3218 |
| MscI | TGGCCA | 1 cut(s) | 1678 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1446, 2244, 2370, 2892, 3779 |
| Msp20I | TGGCCA | 1 cut(s) | 1678 |
| MspA1I | CMGCKG | 5 cut(s) | 124, 366, 3818, 3974, 4118 |
| MspCI | CTTAAG | 1 cut(s) | 1577 |
| MspI | CCGG | 6 cut(s) | 240, 416, 480, 747, 843, 4217 |
| MspR9I | CCNGG | 8 cut(s) | 240, 395, 416, 652, 2013, 2139, 2638, 3985 |
| MunI | CAATTG | 2 cut(s) | 1947, 3366 |
| Mva1269I | GAATGC | 3 cut(s) | 561, 1054, 2227 |
| MvaI | CCWGG | 6 cut(s) | 395, 652, 2013, 2139, 2638, 3985 |
| NaeI | GCCGGC | 1 cut(s) | 4218 |
| NarI | GGCGCC | 1 cut(s) | 501 |
| NciI | CCSGG | 2 cut(s) | 240, 416 |
| NcoI | CCATGG | 4 cut(s) | 306, 2088, 2242, 3360 |
| NgoMIV | GCCGGC | 1 cut(s) | 4216 |
| NmuCI | GTSAC | 5 cut(s) | 322, 2054, 2733, 3338, 4199 |
| NspI | RCATGY | 1 cut(s) | 3964 |
| OliI | CACNNNNGTG | 2 cut(s) | 2244, 2892 |
| PaeR7I | CTCGAG | 1 cut(s) | 181 |
| PaqCI | CACCTGC | 1 cut(s) | 568 |
| PciI | ACATGT | 1 cut(s) | 3960 |
| PciSI | GCTCTTC | 1 cut(s) | 110 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 48, 165, 267 |
| PctI | GAATGC | 3 cut(s) | 561, 1054, 2227 |
| PdiI | GCCGGC | 1 cut(s) | 4218 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3027, 3218 |
| PfeI | GAWTC | 7 cut(s) | 388, 1127, 1540, 2152, 3704, 4171, 4229 |
| PflFI | GACNNNGTC | 1 cut(s) | 314 |
| PfoI | TCCNGGA | 1 cut(s) | 414 |
| PinAI | ACCGGT | 1 cut(s) | 479 |
| Ple19I | CGATCG | 2 cut(s) | 9, 168 |
| PleI | GAGTC | 9 cut(s) | 305, 921, 1385, 1641, 2262, 2689, 2764, 2803, 4196 |
| PluTI | GGCGCC | 1 cut(s) | 504 |
| PpsI | GAGTC | 9 cut(s) | 305, 921, 1385, 1641, 2262, 2689, 2764, 2803, 4196 |
| Ppu21I | YACGTR | 1 cut(s) | 4192 |
| PpuMI | RGGWCCY | 3 cut(s) | 793, 3094, 3372 |
| PscI | ACATGT | 1 cut(s) | 3960 |
| PsiI | TTATAA | 3 cut(s) | 1842, 2568, 2781 |
| Psp124BI | GAGCTC | 2 cut(s) | 2552, 3207 |
| Psp5II | RGGWCCY | 3 cut(s) | 793, 3094, 3372 |
| Psp6I | CCWGG | 6 cut(s) | 393, 650, 2011, 2137, 2636, 3983 |
| PspFI | CCCAGC | 1 cut(s) | 58 |
| PspGI | CCWGG | 6 cut(s) | 393, 650, 2011, 2137, 2636, 3983 |
| PspPI | GGNCC | 9 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3397, 3590, 3742 |
| PspPPI | RGGWCCY | 3 cut(s) | 793, 3094, 3372 |
| PspXI | VCTCGAGB | 1 cut(s) | 181 |
| PstI | CTGCAG | 1 cut(s) | 1554 |
| PsuI | RGATCY | 8 cut(s) | 252, 298, 1172, 2632, 2827, 3190, 3478, 3556 |
| PsyI | GACNNNGTC | 1 cut(s) | 314 |
| PvuI | CGATCG | 2 cut(s) | 9, 168 |
| PvuII | CAGCTG | 1 cut(s) | 124 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1446, 2244, 2370, 2892, 3779 |
| SacI | GAGCTC | 2 cut(s) | 2552, 3207 |
| SapI | GCTCTTC | 1 cut(s) | 110 |
| Sau96I | GGNCC | 9 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3397, 3590, 3742 |
| ScaI | AGTACT | 2 cut(s) | 2266, 2869 |
| SchI | GAGTC | 9 cut(s) | 305, 922, 1385, 1641, 2263, 2690, 2764, 2804, 4196 |
| ScrFI | CCNGG | 8 cut(s) | 240, 395, 416, 652, 2013, 2139, 2638, 3985 |
| SduI | GDGCHC | 5 cut(s) | 435, 2377, 2552, 3207, 3331 |
| SfcI | CTRYAG | 2 cut(s) | 1550, 2871 |
| SfoI | GGCGCC | 1 cut(s) | 502 |
| Sfr274I | CTCGAG | 1 cut(s) | 181 |
| SgrAI | CRCCGGYG | 1 cut(s) | 479 |
| SinI | GGWCC | 8 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3590, 3742 |
| SlaI | CTCGAG | 1 cut(s) | 181 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1446, 2244, 2370, 2892, 3779 |
| SmlI | CTYRAG | 9 cut(s) | 181, 1325, 1577, 2772, 2792, 3032, 3098, 3200, 3668 |
| SmoI | CTYRAG | 9 cut(s) | 181, 1325, 1577, 2772, 2792, 3032, 3098, 3200, 3668 |
| SspDI | GGCGCC | 1 cut(s) | 500 |
| SspI | AATATT | 2 cut(s) | 1027, 1838 |
| SspMI | CTAG | 3 cut(s) | 1491, 3251, 4185 |
| SstI | GAGCTC | 2 cut(s) | 2552, 3207 |
| StyD4I | CCNGG | 8 cut(s) | 238, 393, 414, 650, 2011, 2137, 2636, 3983 |
| StyI | CCWWGG | 7 cut(s) | 306, 2088, 2242, 2823, 3142, 3360, 3458 |
| TaiI | ACGT | 6 cut(s) | 237, 336, 414, 1865, 2735, 4194 |
| TaqII | GACCGA | 1 cut(s) | 1628 |
| TatI | WGTACW | 7 cut(s) | 246, 570, 1367, 2017, 2049, 2264, 2867 |
| TauI | GCSGC | 6 cut(s) | 281, 369, 3818, 3848, 3887, 3890 |
| TfiI | GAWTC | 7 cut(s) | 388, 1127, 1540, 2152, 3704, 4171, 4229 |
| TscAI | CASTG | 7 cut(s) | 532, 2059, 2514, 2704, 2731, 2863, 4228 |
| TseFI | GTSAC | 5 cut(s) | 322, 2054, 2733, 3338, 4199 |
| Tsp45I | GTSAC | 5 cut(s) | 322, 2054, 2733, 3338, 4199 |
| TspGWI | ACGGA | 7 cut(s) | 291, 567, 893, 1446, 2103, 2750, 2820 |
| TspRI | CASTG | 7 cut(s) | 532, 2059, 2514, 2704, 2731, 2863, 4228 |
| Tth111I | GACNNNGTC | 1 cut(s) | 314 |
| Vha464I | CTTAAG | 1 cut(s) | 1577 |
| VpaK11BI | GGWCC | 8 cut(s) | 648, 793, 1621, 1827, 3094, 3372, 3590, 3742 |
| XapI | RAATTY | 9 cut(s) | 264, 1252, 1354, 1692, 2786, 2939, 3027, 3059, 3718 |
| XceI | RCATGY | 1 cut(s) | 3964 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2634, 2763, 3465 |
| XhoI | CTCGAG | 1 cut(s) | 181 |
| XmiI | GTMKAC | 5 cut(s) | 195, 357, 408, 1568, 2874 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3027, 3218 |
| XspI | CTAG | 3 cut(s) | 1491, 3251, 4185 |
| ZraI | GACGTC | 2 cut(s) | 334, 2733 |
| ZrmI | AGTACT | 2 cut(s) | 2266, 2869 |