Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 179, 188 |
| AgsI | TTSAA | 2 cut(s) | 7, 76 |
| AluBI | AGCT | 3 cut(s) | 152, 164, 173 |
| AluI | AGCT | 3 cut(s) | 152, 164, 173 |
| ApeKI | GCWGC | 3 cut(s) | 14, 161, 191 |
| AsuC2I | CCSGG | 1 cut(s) | 104 |
| AsuHPI | GGTGA | 1 cut(s) | 27 |
| BbvI | GCAGC | 2 cut(s) | 173, 178 |
| BcnI | CCSGG | 1 cut(s) | 104 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BisI | GCNGC | 4 cut(s) | 15, 162, 189, 192 |
| BlsI | GCNGC | 4 cut(s) | 16, 163, 190, 193 |
| Bme1390I | CCNGG | 1 cut(s) | 104 |
| BmrFI | CCNGG | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 52, 84 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| BpuMI | CCSGG | 1 cut(s) | 104 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 136, 166 |
| Bse1I | ACTGG | 1 cut(s) | 155 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseMII | CTCAG | 4 cut(s) | 9, 219, 246, 276 |
| BseNI | ACTGG | 1 cut(s) | 155 |
| BseXI | GCAGC | 2 cut(s) | 173, 178 |
| BsiSI | CCGG | 1 cut(s) | 103 |
| BspACI | CCGC | 2 cut(s) | 179, 188 |
| BspCNI | CTCAG | 4 cut(s) | 10, 220, 247, 277 |
| BspQI | GCTCTTC | 1 cut(s) | 163 |
| BsrI | ACTGG | 1 cut(s) | 155 |
| Bst6I | CTCTTC | 3 cut(s) | 77, 132, 163 |
| BstC8I | GCNNGC | 1 cut(s) | 12 |
| BstDEI | CTNAG | 4 cut(s) | 18, 228, 255, 285 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 170 |
| BstSCI | CCNGG | 1 cut(s) | 102 |
| BstV1I | GCAGC | 2 cut(s) | 173, 178 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 1 cut(s) | 12 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 67, 102 |
| CviJI | RGCY | 6 cut(s) | 10, 102, 152, 164, 173, 191 |
| CviKI_1 | RGCY | 6 cut(s) | 10, 102, 152, 164, 173, 191 |
| DdeI | CTNAG | 4 cut(s) | 18, 228, 255, 285 |
| Eam1104I | CTCTTC | 3 cut(s) | 77, 132, 163 |
| EarI | CTCTTC | 3 cut(s) | 77, 132, 163 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 162, 189, 192 |
| FokI | GGATG | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 162, 189, 192 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GluI | GCNGC | 4 cut(s) | 15, 162, 189, 192 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| HapII | CCGG | 1 cut(s) | 103 |
| HincII | GTYRAC | 1 cut(s) | 109 |
| HindII | GTYRAC | 1 cut(s) | 109 |
| HinfI | GANTC | 6 cut(s) | 65, 211, 224, 251, 272, 281 |
| HpaI | GTTAAC | 1 cut(s) | 109 |
| HpaII | CCGG | 1 cut(s) | 103 |
| HphI | GGTGA | 1 cut(s) | 27 |
| Hpy166II | GTNNAC | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 4 cut(s) | 229, 256, 277, 286 |
| Hpy8I | GTNNAC | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 1 cut(s) | 236 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 170 |
| HpyF3I | CTNAG | 4 cut(s) | 18, 228, 255, 285 |
| KspAI | GTTAAC | 1 cut(s) | 109 |
| LguI | GCTCTTC | 1 cut(s) | 163 |
| LmnI | GCTCC | 1 cut(s) | 157 |
| LpnPI | CCDG | 7 cut(s) | 12, 24, 51, 116, 150, 168, 187 |
| Lsp1109I | GCAGC | 2 cut(s) | 173, 178 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MboII | GAAGA | 4 cut(s) | 94, 128, 149, 180 |
| MluCI | AATT | 1 cut(s) | 267 |
| MlyI | GAGTC | 1 cut(s) | 260 |
| MnlI | CCTC | 5 cut(s) | 54, 177, 223, 250, 256 |
| MseI | TTAA | 1 cut(s) | 108 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspI | CCGG | 1 cut(s) | 103 |
| MspR9I | CCNGG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 170 |
| NciI | CCSGG | 1 cut(s) | 104 |
| PciSI | GCTCTTC | 1 cut(s) | 163 |
| PfeI | GAWTC | 5 cut(s) | 65, 211, 224, 272, 281 |
| PkrI | GCNGC | 4 cut(s) | 16, 163, 190, 193 |
| PleI | GAGTC | 1 cut(s) | 259 |
| PpsI | GAGTC | 1 cut(s) | 259 |
| PvuII | CAGCTG | 1 cut(s) | 164 |
| SapI | GCTCTTC | 1 cut(s) | 163 |
| SaqAI | TTAA | 1 cut(s) | 108 |
| SatI | GCNGC | 4 cut(s) | 15, 162, 189, 192 |
| SchI | GAGTC | 1 cut(s) | 260 |
| ScrFI | CCNGG | 1 cut(s) | 104 |
| SetI | ASST | 4 cut(s) | 154, 166, 175, 261 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| Sse9I | AATT | 1 cut(s) | 267 |
| SsiI | CCGC | 2 cut(s) | 179, 188 |
| SspMI | CTAG | 1 cut(s) | 174 |
| StyD4I | CCNGG | 1 cut(s) | 102 |
| TasI | AATT | 1 cut(s) | 267 |
| TauI | GCSGC | 1 cut(s) | 191 |
| TfiI | GAWTC | 5 cut(s) | 65, 211, 224, 272, 281 |
| Tru1I | TTAA | 1 cut(s) | 108 |
| Tru9I | TTAA | 1 cut(s) | 108 |
| TseI | GCWGC | 3 cut(s) | 14, 161, 191 |
| TspDTI | ATGAA | 1 cut(s) | 140 |
| XspI | CTAG | 1 cut(s) | 174 |