Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c | PF02518 | 79 - 173 | 2.8e-07 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| DNA_gyraseB | PF00204 | 269 - 419 | 3.1e-16 | DNA gyrase B |
| TOPRIM_C | PF16898 | 533 - 653 | 9.1e-46 | C-terminal associated domain of TOPRIM |
| DNA_topoisoIV | PF00521 | 656 - 1115 | 1.2e-117 | DNA gyrase/topoisomerase IV, subunit A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2430, 2643 |
| AarI | CACCTGC | 1 cut(s) | 562 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 206 |
| AatII | GACGTC | 1 cut(s) | 330 |
| Acc36I | ACCTGC | 3 cut(s) | 562, 3283, 3590 |
| Acc65I | GGTACC | 1 cut(s) | 3233 |
| AccB1I | GGYRCC | 5 cut(s) | 68, 426, 494, 2485, 3233 |
| AclI | AACGTT | 1 cut(s) | 2454 |
| AclWI | GGATC | 9 cut(s) | 150, 163, 1965, 2489, 2502, 2684, 2697, 2843, 3348 |
| AcoI | YGGCCR | 2 cut(s) | 73, 3920 |
| AcsI | RAATTY | 6 cut(s) | 524, 674, 2648, 2739, 2889, 2921 |
| AcuI | CTGAAG | 4 cut(s) | 1271, 2816, 3756, 3956 |
| AcyI | GRCGYC | 4 cut(s) | 56, 69, 327, 495 |
| AdeI | CACNNNGTG | 1 cut(s) | 1048 |
| AfeI | AGCGCT | 1 cut(s) | 215 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 301, 1114, 1439, 2965, 3010, 3249, 3599, 3918 |
| AflII | CTTAAG | 1 cut(s) | 1666 |
| AgeI | ACCGGT | 2 cut(s) | 473, 607 |
| AhlI | ACTAGT | 1 cut(s) | 437 |
| AjnI | CCWGG | 5 cut(s) | 387, 1873, 1999, 2345, 3693 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2678, 2710, 2933, 2965, 3162, 3194 |
| AleI | CACNNNNGTG | 1 cut(s) | 2106 |
| Alw21I | GWGCWC | 4 cut(s) | 126, 2239, 2414, 3069 |
| Alw26I | GTCTC | 6 cut(s) | 226, 285, 914, 2433, 2585, 3959 |
| AlwI | GGATC | 9 cut(s) | 150, 163, 1965, 2489, 2502, 2684, 2697, 2843, 3348 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3173 |
| Ama87I | CYCGRG | 2 cut(s) | 645, 1640 |
| Aor51HI | AGCGCT | 1 cut(s) | 215 |
| AoxI | GGCC | 6 cut(s) | 73, 235, 2682, 3780, 3920, 3975 |
| ApoI | RAATTY | 6 cut(s) | 524, 674, 2648, 2739, 2889, 2921 |
| AseI | ATTAAT | 1 cut(s) | 2172 |
| AsiGI | ACCGGT | 2 cut(s) | 473, 607 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1212, 1775, 2889, 3080 |
| Asp718I | GGTACC | 1 cut(s) | 3233 |
| AspLEI | GCGC | 5 cut(s) | 21, 71, 216, 497, 3442 |
| AspS9I | GGNCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| AsuC2I | CCSGG | 3 cut(s) | 234, 646, 647 |
| AvaI | CYCGRG | 2 cut(s) | 645, 1640 |
| AvaII | GGWCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| AxyI | CCTNAGG | 2 cut(s) | 2757, 3570 |
| BaeGI | GKGCMC | 2 cut(s) | 429, 2828 |
| BamHI | GGATCC | 3 cut(s) | 155, 2494, 2689 |
| BanI | GGYRCC | 5 cut(s) | 68, 426, 494, 2485, 3233 |
| BanII | GRGCYC | 2 cut(s) | 2414, 3069 |
| BbsI | GAAGAC | 3 cut(s) | 181, 473, 1205 |
| Bbv12I | GWGCWC | 4 cut(s) | 126, 2239, 2414, 3069 |
| BccI | CCATC | 8 cut(s) | 199, 329, 1256, 1793, 1982, 1984, 2318, 2764 |
| BceAI | ACGGC | 7 cut(s) | 66, 82, 94, 376, 502, 508, 562 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 70, 104 |
| BciT130I | CCWGG | 5 cut(s) | 389, 1875, 2001, 2347, 3695 |
| BciVI | GTATCC | 1 cut(s) | 3136 |
| BclI | TGATCA | 5 cut(s) | 1581, 1591, 1888, 2722, 2862 |
| BcnI | CCSGG | 3 cut(s) | 234, 646, 647 |
| BcoDI | GTCTC | 6 cut(s) | 226, 285, 914, 2433, 2585, 3959 |
| BcuI | ACTAGT | 1 cut(s) | 437 |
| BfaI | CTAG | 5 cut(s) | 438, 1757, 2744, 2817, 3786 |
| BfmI | CTRYAG | 3 cut(s) | 26, 1526, 3846 |
| BfoI | RGCGCY | 4 cut(s) | 22, 72, 217, 498 |
| BfrI | CTTAAG | 1 cut(s) | 1666 |
| BfuAI | ACCTGC | 3 cut(s) | 562, 3283, 3590 |
| BfuI | GTATCC | 1 cut(s) | 3136 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 50, 3916 |
| BglII | AGATCT | 2 cut(s) | 246, 1246 |
| BlpI | GCTNAGC | 1 cut(s) | 3906 |
| BmcAI | AGTACT | 2 cut(s) | 1723, 2128 |
| Bme1390I | CCNGG | 8 cut(s) | 234, 389, 646, 647, 1875, 2001, 2347, 3695 |
| Bme18I | GGWCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| BmeT110I | CYCGRG | 2 cut(s) | 645, 1640 |
| BmgT120I | GGNCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| BmrFI | CCNGG | 8 cut(s) | 234, 389, 646, 647, 1875, 2001, 2347, 3695 |
| BmrI | ACTGGG | 1 cut(s) | 2059 |
| BmsI | GCATC | 6 cut(s) | 351, 734, 1297, 1582, 2848, 3337 |
| BmuI | ACTGGG | 1 cut(s) | 2059 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1478 |
| BpiI | GAAGAC | 3 cut(s) | 181, 473, 1205 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2648, 2680 |
| BpmI | CTGGAG | 6 cut(s) | 140, 1322, 2675, 3395, 3705, 3900 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1374, 3471 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3906 |
| BpuEI | CTTGAG | 6 cut(s) | 1019, 1461, 2619, 2915, 2981, 3083 |
| BpuMI | CCSGG | 3 cut(s) | 234, 646, 647 |
| BsaHI | GRCGYC | 4 cut(s) | 56, 69, 327, 495 |
| BsaI | GGTCTC | 1 cut(s) | 285 |
| BsaWI | WCCGGW | 3 cut(s) | 373, 473, 607 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 360, 390 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 301, 1114, 1439, 2965, 3010, 3249, 3599, 3918 |
| Bse118I | RCCGGY | 3 cut(s) | 71, 473, 607 |
| Bse1I | ACTGG | 9 cut(s) | 644, 1401, 1467, 2065, 2124, 2357, 2521, 2551, 3540 |
| Bse21I | CCTNAGG | 2 cut(s) | 2757, 3570 |
| Bse3DI | GCAATG | 3 cut(s) | 934, 1392, 3555 |
| BseBI | CCWGG | 5 cut(s) | 389, 1875, 2001, 2347, 3695 |
| BseGI | GGATG | 7 cut(s) | 749, 873, 1312, 1804, 2296, 2418, 3000 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 301, 1114, 1439, 2965, 3010, 3249, 3599, 3918 |
| BseMI | GCAATG | 3 cut(s) | 934, 1392, 3555 |
| BseMII | CTCAG | 9 cut(s) | 864, 925, 1616, 2076, 2614, 2748, 3129, 3180, 3561 |
| BseNI | ACTGG | 9 cut(s) | 644, 1401, 1467, 2065, 2124, 2357, 2521, 2551, 3540 |
| BseRI | GAGGAG | 3 cut(s) | 407, 2774, 2912 |
| BseSI | GKGCMC | 2 cut(s) | 429, 2828 |
| BseYI | CCCAGC | 1 cut(s) | 3128 |
| Bsh1285I | CGRYCG | 1 cut(s) | 90 |
| BshFI | GGCC | 6 cut(s) | 75, 237, 2684, 3782, 3922, 3977 |
| BshNI | GGYRCC | 5 cut(s) | 68, 426, 494, 2485, 3233 |
| BshTI | ACCGGT | 2 cut(s) | 473, 607 |
| BsiEI | CGRYCG | 1 cut(s) | 90 |
| BsiHKAI | GWGCWC | 4 cut(s) | 126, 2239, 2414, 3069 |
| BsiHKCI | CYCGRG | 2 cut(s) | 645, 1640 |
| BsiSI | CCGG | 8 cut(s) | 72, 234, 374, 410, 474, 608, 646, 837 |
| BslFI | GGGAC | 7 cut(s) | 215, 773, 1407, 1427, 1754, 2215, 2413 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 301, 1114, 1439, 2965, 3010, 3249, 3599, 3918 |
| BsmAI | GTCTC | 6 cut(s) | 226, 285, 914, 2433, 2585, 3959 |
| BsmBI | CGTCTC | 1 cut(s) | 226 |
| BsmFI | GGGAC | 7 cut(s) | 215, 773, 1407, 1427, 1754, 2215, 2413 |
| BsmI | GAATGC | 2 cut(s) | 2089, 3442 |
| BsnI | GGCC | 6 cut(s) | 75, 237, 2684, 3782, 3922, 3977 |
| Bso31I | GGTCTC | 1 cut(s) | 285 |
| BsoBI | CYCGRG | 2 cut(s) | 645, 1640 |
| Bsp1286I | GDGCHC | 6 cut(s) | 126, 429, 2239, 2414, 2828, 3069 |
| Bsp1407I | TGTACA | 1 cut(s) | 351 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3906 |
| Bsp19I | CCATGG | 4 cut(s) | 300, 1950, 2104, 3222 |
| BspANI | GGCC | 6 cut(s) | 75, 237, 2684, 3782, 3922, 3977 |
| BspCNI | CTCAG | 9 cut(s) | 865, 924, 1615, 2077, 2613, 2749, 3130, 3179, 3562 |
| BspHI | TCATGA | 1 cut(s) | 1584 |
| BspMAI | CTGCAG | 3 cut(s) | 30, 1530, 3850 |
| BspMI | ACCTGC | 3 cut(s) | 562, 3283, 3590 |
| BspPI | GGATC | 9 cut(s) | 150, 163, 1965, 2489, 2502, 2684, 2697, 2843, 3348 |
| BspQI | GCTCTTC | 1 cut(s) | 104 |
| BspT107I | GGYRCC | 5 cut(s) | 68, 426, 494, 2485, 3233 |
| BspTI | CTTAAG | 1 cut(s) | 1666 |
| BspTNI | GGTCTC | 1 cut(s) | 285 |
| BsrDI | GCAATG | 3 cut(s) | 934, 1392, 3555 |
| BsrFI | RCCGGY | 3 cut(s) | 71, 473, 607 |
| BsrGI | TGTACA | 1 cut(s) | 351 |
| BsrI | ACTGG | 9 cut(s) | 644, 1401, 1467, 2065, 2124, 2357, 2521, 2551, 3540 |
| BssAI | RCCGGY | 3 cut(s) | 71, 473, 607 |
| BssNI | GRCGYC | 4 cut(s) | 56, 69, 327, 495 |
| BssT1I | CCWWGG | 9 cut(s) | 300, 748, 863, 1950, 2104, 2498, 2685, 3004, 3222 |
| Bst2UI | CCWGG | 5 cut(s) | 389, 1875, 2001, 2347, 3695 |
| Bst6I | CTCTTC | 5 cut(s) | 104, 1836, 3038, 3153, 3922 |
| BstACI | GRCGYC | 4 cut(s) | 56, 69, 327, 495 |
| BstAFI | CTTAAG | 1 cut(s) | 1666 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 130, 2060 |
| BstAUI | TGTACA | 1 cut(s) | 351 |
| BstC8I | GCNNGC | 6 cut(s) | 23, 73, 116, 551, 3630, 3876 |
| BstDSI | CCRYGG | 6 cut(s) | 76, 300, 1950, 2104, 3222, 3914 |
| BstF5I | GGATG | 7 cut(s) | 749, 873, 1312, 1804, 2296, 2418, 3000 |
| BstH2I | RGCGCY | 4 cut(s) | 22, 72, 217, 498 |
| BstHHI | GCGC | 5 cut(s) | 21, 71, 216, 497, 3442 |
| BstMAI | GTCTC | 6 cut(s) | 226, 285, 914, 2433, 2585, 3959 |
| BstMCI | CGRYCG | 1 cut(s) | 90 |
| BstNI | CCWGG | 5 cut(s) | 389, 1875, 2001, 2347, 3695 |
| BstNSI | RCATGY | 1 cut(s) | 2839 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1478 |
| BstSCI | CCNGG | 8 cut(s) | 232, 387, 644, 645, 1873, 1999, 2345, 3693 |
| BstSFI | CTRYAG | 3 cut(s) | 26, 1526, 3846 |
| BstSLI | GKGCMC | 2 cut(s) | 429, 2828 |
| BstV2I | GAAGAC | 3 cut(s) | 181, 473, 1205 |
| BstX2I | RGATCY | 7 cut(s) | 155, 246, 1246, 1957, 2494, 2689, 3340 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2072, 2821 |
| BstYI | RGATCY | 7 cut(s) | 155, 246, 1246, 1957, 2494, 2689, 3340 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2757, 3570 |
| BsuI | GTATCC | 1 cut(s) | 3136 |
| BsuRI | GGCC | 6 cut(s) | 75, 237, 2684, 3782, 3922, 3977 |
| BtgI | CCRYGG | 6 cut(s) | 76, 300, 1950, 2104, 3222, 3914 |
| BtsCI | GGATG | 7 cut(s) | 749, 873, 1312, 1804, 2296, 2418, 3000 |
| BtsIMutI | CAGTG | 5 cut(s) | 352, 919, 1474, 1921, 3326 |
| BveI | ACCTGC | 3 cut(s) | 562, 3283, 3590 |
| Cac8I | GCNNGC | 6 cut(s) | 23, 73, 116, 551, 3630, 3876 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3173 |
| CciI | TCATGA | 1 cut(s) | 1584 |
| CfoI | GCGC | 5 cut(s) | 21, 71, 216, 497, 3442 |
| Cfr10I | RCCGGY | 3 cut(s) | 71, 473, 607 |
| Cfr13I | GGNCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| Cfr9I | CCCGGG | 1 cut(s) | 645 |
| CseI | GACGC | 3 cut(s) | 45, 314, 489 |
| CsiI | ACCWGGT | 1 cut(s) | 2345 |
| CspAI | ACCGGT | 2 cut(s) | 473, 607 |
| DinI | GGCGCC | 2 cut(s) | 70, 496 |
| DraI | TTTAAA | 1 cut(s) | 2806 |
| DraIII | CACNNNGTG | 1 cut(s) | 1048 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 206 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 206 |
| EaeI | YGGCCR | 2 cut(s) | 73, 3920 |
| Eam1104I | CTCTTC | 5 cut(s) | 104, 1836, 3038, 3153, 3922 |
| EarI | CTCTTC | 5 cut(s) | 104, 1836, 3038, 3153, 3922 |
| EciI | GGCGGA | 1 cut(s) | 1970 |
| Ecl136II | GAGCTC | 2 cut(s) | 2412, 3067 |
| Eco130I | CCWWGG | 9 cut(s) | 300, 748, 863, 1950, 2104, 2498, 2685, 3004, 3222 |
| Eco24I | GRGCYC | 2 cut(s) | 2414, 3069 |
| Eco31I | GGTCTC | 1 cut(s) | 285 |
| Eco47I | GGWCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| Eco47III | AGCGCT | 1 cut(s) | 215 |
| Eco53kI | GAGCTC | 2 cut(s) | 2412, 3067 |
| Eco57I | CTGAAG | 4 cut(s) | 1271, 2816, 3756, 3956 |
| Eco81I | CCTNAGG | 2 cut(s) | 2757, 3570 |
| Eco88I | CYCGRG | 2 cut(s) | 645, 1640 |
| EcoICRI | GAGCTC | 2 cut(s) | 2412, 3067 |
| EcoO109I | RGGNCCY | 1 cut(s) | 787 |
| EcoRI | GAATTC | 2 cut(s) | 524, 2921 |
| EcoRII | CCWGG | 5 cut(s) | 387, 1873, 1999, 2345, 3693 |
| EcoT14I | CCWWGG | 9 cut(s) | 300, 748, 863, 1950, 2104, 2498, 2685, 3004, 3222 |
| EcoT22I | ATGCAT | 1 cut(s) | 2841 |
| EcoT38I | GRGCYC | 2 cut(s) | 2414, 3069 |
| EgeI | GGCGCC | 2 cut(s) | 70, 496 |
| EheI | GGCGCC | 2 cut(s) | 70, 496 |
| ErhI | CCWWGG | 9 cut(s) | 300, 748, 863, 1950, 2104, 2498, 2685, 3004, 3222 |
| Esp3I | CGTCTC | 1 cut(s) | 226 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1331, 1363, 1760, 1792, 2024, 2056, 3660, 3692 |
| FaqI | GGGAC | 7 cut(s) | 215, 773, 1407, 1427, 1754, 2215, 2413 |
| FauI | CCCGC | 3 cut(s) | 30, 717, 1384 |
| FbaI | TGATCA | 5 cut(s) | 1581, 1591, 1888, 2722, 2862 |
| FokI | GGATG | 7 cut(s) | 756, 880, 1319, 1811, 2303, 2405, 2987 |
| FriOI | GRGCYC | 2 cut(s) | 2414, 3069 |
| FspBI | CTAG | 5 cut(s) | 438, 1757, 2744, 2817, 3786 |
| GlaI | GCGC | 5 cut(s) | 20, 70, 215, 496, 3441 |
| GsaI | CCCAGC | 1 cut(s) | 3132 |
| GsuI | CTGGAG | 6 cut(s) | 140, 1322, 2675, 3395, 3705, 3900 |
| HaeII | RGCGCY | 4 cut(s) | 22, 72, 217, 498 |
| HaeIII | GGCC | 6 cut(s) | 75, 237, 2684, 3782, 3922, 3977 |
| HapII | CCGG | 8 cut(s) | 72, 234, 374, 410, 474, 608, 646, 837 |
| HgaI | GACGC | 3 cut(s) | 45, 314, 489 |
| HhaI | GCGC | 5 cut(s) | 21, 71, 216, 497, 3442 |
| Hin1I | GRCGYC | 4 cut(s) | 56, 69, 327, 495 |
| Hin6I | GCGC | 5 cut(s) | 19, 69, 214, 495, 3440 |
| HinP1I | GCGC | 5 cut(s) | 19, 69, 214, 495, 3440 |
| HincII | GTYRAC | 1 cut(s) | 60 |
| HindII | GTYRAC | 1 cut(s) | 60 |
| HindIII | AAGCTT | 5 cut(s) | 1650, 1663, 1901, 2255, 3258 |
| HpaII | CCGG | 8 cut(s) | 72, 234, 374, 410, 474, 608, 646, 837 |
| Hpy99I | CGWCG | 7 cut(s) | 203, 257, 329, 332, 368, 455, 548 |
| HpyCH4IV | ACGT | 4 cut(s) | 228, 327, 1047, 2454 |
| HpySE526I | ACGT | 4 cut(s) | 228, 327, 1047, 2454 |
| Hsp92I | GRCGYC | 4 cut(s) | 56, 69, 327, 495 |
| HspAI | GCGC | 5 cut(s) | 19, 69, 214, 495, 3440 |
| KasI | GGCGCC | 2 cut(s) | 68, 494 |
| KflI | GGGWCCC | 1 cut(s) | 787 |
| KpnI | GGTACC | 1 cut(s) | 3237 |
| KroI | GCCGGC | 1 cut(s) | 71 |
| KroNI | GCCGGC | 1 cut(s) | 73 |
| Ksp22I | TGATCA | 5 cut(s) | 1581, 1591, 1888, 2722, 2862 |
| LguI | GCTCTTC | 1 cut(s) | 104 |
| LweI | GCATC | 6 cut(s) | 351, 734, 1297, 1582, 2848, 3337 |
| MabI | ACCWGGT | 1 cut(s) | 2345 |
| MaeI | CTAG | 5 cut(s) | 438, 1757, 2744, 2817, 3786 |
| MaeII | ACGT | 4 cut(s) | 228, 327, 1047, 2454 |
| MfeI | CAATTG | 2 cut(s) | 1809, 3228 |
| MflI | RGATCY | 7 cut(s) | 155, 246, 1246, 1957, 2494, 2689, 3340 |
| MhlI | GDGCHC | 6 cut(s) | 126, 429, 2239, 2414, 2828, 3069 |
| Mly113I | GGCGCC | 2 cut(s) | 69, 495 |
| MlyI | GAGTC | 6 cut(s) | 916, 1468, 2197, 2626, 2666, 3961 |
| MmeI | TCCRAC | 4 cut(s) | 160, 2931, 2946, 3094 |
| Mph1103I | ATGCAT | 1 cut(s) | 2841 |
| MroNI | GCCGGC | 1 cut(s) | 71 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1212, 1775, 2889, 3080 |
| MslI | CAYNNNNRTG | 6 cut(s) | 347, 1422, 2106, 2138, 2232, 2819 |
| MspA1I | CMGCKG | 6 cut(s) | 25, 118, 3596, 3839, 3899, 3940 |
| MspCI | CTTAAG | 1 cut(s) | 1666 |
| MspI | CCGG | 8 cut(s) | 72, 234, 374, 410, 474, 608, 646, 837 |
| MspR9I | CCNGG | 8 cut(s) | 234, 389, 646, 647, 1875, 2001, 2347, 3695 |
| MssI | GTTTAAAC | 1 cut(s) | 2806 |
| MunI | CAATTG | 2 cut(s) | 1809, 3228 |
| Mva1269I | GAATGC | 2 cut(s) | 2089, 3442 |
| MvaI | CCWGG | 5 cut(s) | 389, 1875, 2001, 2347, 3695 |
| NaeI | GCCGGC | 1 cut(s) | 73 |
| NarI | GGCGCC | 2 cut(s) | 69, 495 |
| NciI | CCSGG | 3 cut(s) | 234, 646, 647 |
| NcoI | CCATGG | 4 cut(s) | 300, 1950, 2104, 3222 |
| NgoMIV | GCCGGC | 1 cut(s) | 71 |
| NmuCI | GTSAC | 6 cut(s) | 316, 649, 914, 970, 1916, 3324 |
| NsiI | ATGCAT | 1 cut(s) | 2841 |
| NspI | RCATGY | 1 cut(s) | 2839 |
| OliI | CACNNNNGTG | 1 cut(s) | 2106 |
| PagI | TCATGA | 1 cut(s) | 1584 |
| PaqCI | CACCTGC | 1 cut(s) | 562 |
| PciSI | GCTCTTC | 1 cut(s) | 104 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 198, 540, 3801 |
| PctI | GAATGC | 2 cut(s) | 2089, 3442 |
| PdiI | GCCGGC | 1 cut(s) | 73 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1212, 1775, 2889, 3080 |
| PinAI | ACCGGT | 2 cut(s) | 473, 607 |
| Ple19I | CGATCG | 1 cut(s) | 90 |
| PleI | GAGTC | 6 cut(s) | 915, 1468, 2197, 2626, 2665, 3960 |
| PluTI | GGCGCC | 2 cut(s) | 72, 498 |
| PmeI | GTTTAAAC | 1 cut(s) | 2806 |
| PpsI | GAGTC | 6 cut(s) | 915, 1468, 2197, 2626, 2665, 3960 |
| PpuMI | RGGWCCY | 1 cut(s) | 787 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1478 |
| PshBI | ATTAAT | 1 cut(s) | 2172 |
| PsiI | TTATAA | 2 cut(s) | 2430, 2643 |
| Psp124BI | GAGCTC | 2 cut(s) | 2414, 3069 |
| Psp1406I | AACGTT | 1 cut(s) | 2454 |
| Psp5II | RGGWCCY | 1 cut(s) | 787 |
| Psp6I | CCWGG | 5 cut(s) | 387, 1873, 1999, 2345, 3693 |
| PspFI | CCCAGC | 1 cut(s) | 3128 |
| PspGI | CCWGG | 5 cut(s) | 387, 1873, 1999, 2345, 3693 |
| PspPI | GGNCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| PspPPI | RGGWCCY | 1 cut(s) | 787 |
| PstI | CTGCAG | 3 cut(s) | 30, 1530, 3850 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3173 |
| PsuI | RGATCY | 7 cut(s) | 155, 246, 1246, 1957, 2494, 2689, 3340 |
| PvuI | CGATCG | 1 cut(s) | 90 |
| PvuII | CAGCTG | 2 cut(s) | 118, 3839 |
| RseI | CAYNNNNRTG | 6 cut(s) | 347, 1422, 2106, 2138, 2232, 2819 |
| SacI | GAGCTC | 2 cut(s) | 2414, 3069 |
| SapI | GCTCTTC | 1 cut(s) | 104 |
| Sau96I | GGNCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| ScaI | AGTACT | 2 cut(s) | 1723, 2128 |
| SchI | GAGTC | 6 cut(s) | 916, 1468, 2197, 2626, 2666, 3961 |
| ScrFI | CCNGG | 8 cut(s) | 234, 389, 646, 647, 1875, 2001, 2347, 3695 |
| SduI | GDGCHC | 6 cut(s) | 126, 429, 2239, 2414, 2828, 3069 |
| SexAI | ACCWGGT | 1 cut(s) | 2345 |
| SfaNI | GCATC | 6 cut(s) | 351, 734, 1297, 1582, 2848, 3337 |
| SfcI | CTRYAG | 3 cut(s) | 26, 1526, 3846 |
| SfoI | GGCGCC | 2 cut(s) | 70, 496 |
| SgrAI | CRCCGGYG | 1 cut(s) | 473 |
| SinI | GGWCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| SmaI | CCCGGG | 1 cut(s) | 647 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 347, 1422, 2106, 2138, 2232, 2819 |
| SmlI | CTYRAG | 7 cut(s) | 1034, 1476, 1666, 2634, 2894, 2960, 3062 |
| SmoI | CTYRAG | 7 cut(s) | 1034, 1476, 1666, 2634, 2894, 2960, 3062 |
| SpeI | ACTAGT | 1 cut(s) | 437 |
| SspDI | GGCGCC | 2 cut(s) | 68, 494 |
| SspI | AATATT | 1 cut(s) | 1507 |
| SspMI | CTAG | 5 cut(s) | 438, 1757, 2744, 2817, 3786 |
| SstI | GAGCTC | 2 cut(s) | 2414, 3069 |
| StyD4I | CCNGG | 8 cut(s) | 232, 387, 644, 645, 1873, 1999, 2345, 3693 |
| StyI | CCWWGG | 9 cut(s) | 300, 748, 863, 1950, 2104, 2498, 2685, 3004, 3222 |
| TaiI | ACGT | 4 cut(s) | 231, 330, 1050, 2457 |
| TaqI | TCGA | 9 cut(s) | 9, 90, 192, 252, 324, 330, 534, 2700, 3345 |
| TatI | WGTACW | 6 cut(s) | 351, 564, 1721, 1911, 2126, 2729 |
| TauI | GCSGC | 8 cut(s) | 56, 275, 556, 3599, 3902, 3905, 3922, 3943 |
| TscAI | CASTG | 5 cut(s) | 352, 919, 1474, 1921, 3333 |
| TseFI | GTSAC | 6 cut(s) | 316, 649, 914, 970, 1916, 3324 |
| Tsp45I | GTSAC | 6 cut(s) | 316, 649, 914, 970, 1916, 3324 |
| TspGWI | ACGGA | 5 cut(s) | 208, 381, 1289, 2612, 3598 |
| TspMI | CCCGGG | 1 cut(s) | 645 |
| TspRI | CASTG | 5 cut(s) | 352, 919, 1474, 1921, 3333 |
| Vha464I | CTTAAG | 1 cut(s) | 1666 |
| VpaK11BI | GGWCC | 8 cut(s) | 208, 642, 787, 1414, 1689, 2549, 3590, 3934 |
| VspI | ATTAAT | 1 cut(s) | 2172 |
| XapI | RAATTY | 6 cut(s) | 524, 674, 2648, 2739, 2889, 2921 |
| XceI | RCATGY | 1 cut(s) | 2839 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 2496, 2625, 3327, 3547 |
| XmaI | CCCGGG | 1 cut(s) | 645 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1212, 1775, 2889, 3080 |
| XspI | CTAG | 5 cut(s) | 438, 1757, 2744, 2817, 3786 |
| ZraI | GACGTC | 1 cut(s) | 328 |
| ZrmI | AGTACT | 2 cut(s) | 1723, 2128 |
| Zsp2I | ATGCAT | 1 cut(s) | 2841 |