Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001532

Physical Location & Seq

Genomic Coordinates Reverse (-)

889181 .. 892415

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATTATTTTGAAAAGCTTTTAAGGAAGAAGAAGGATTTTGTTTGGGTAGATGAGTGTGATGATGAGGCAATTGAACTCGCTTTCAGCAAGAAGTTTGAGGTGGGAAGTTTGCAGTCTGGTATGCAACTTGATCATGAGGAGAAAGTTGTAACTTATAGTGACTTTGTTGACAAGGAGCTTATACCCTTTTCCATCCTTGTTGTTCTGCAACGCTTATTTCCGTCAATGGTTGATGGCTTGAAGCCTCATCAAAGACAGATTCTATTCGCCTCTTTTAGGATAGAAGACCTTATCAAGGAAGCAATAGTTGCCGAATTTGCTGATTATGTGGCAACAGTCTCGTCTCGTCCTGTGTGTGAGCTCTCGGCATACTATCATGATAGGCAGAGTCTTGACAGTACAATCATTGAAATGGCACAGGCTTGTGTCGGCAGCAAAAACATTAATCTACTTGAAATGGCCCGTCAATTGGGAGAAGATAATCATCTTTCTATTCAATTTTCTCCTATCACAAGGTTCCTATTTCCGAAGGATGATGACAAGCTTCTGGACTACTTGCATGAAGATGGCATATCTATTGAGCCAACATGGTATTTACCAATTATCCCAACAGTTCTTGTCAATGGTTTTGAAGGTACTGGGCCTACTGGCTGGACCTCTTACATCCCTAGTTTCAATCCAAGAGACATTGTGGAAAACATGAAACGTTTGATTAATGATGATAAAATGGCGCCCATGGTTCCTTGGTATAGAGGCTTTACCGGAACTATTGAGAAAACTGTTACCGATTCTTGTGTGTGCTACACTACTTGTGGGATCATAAAGAGAGAAGATGAGTCAACTCTCAGGATCACAGAGCTGCCAATCGGTTCGTGCATTAAAGATTATTTGGAATTTCTTGGCTCTATCTCGGAAGTGCATGGCTTGGCCGAGGATCATATGATTAAGGGTTATGAAGATTTTTCCAACATAGATGTTGACATTCTCATCCACTTGTCTGATACTGTGAAGAACTTGAAAGAAGCAGTAAAGAGGATTTGTGTAAGACGTTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 map01524

Pfam Domains

Protein Families

DNA_gyraseB DNA_topoisoIV HATPase_c TOPRIM_C Toprim

Protein Analysis

354

Amino Acids

40.41

Weight (kDa)

4.83

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOPRIM_C	PF16898	2 - 66	3.6e-10	C-terminal associated domain of TOPRIM
DNA_topoisoIV	PF00521	74 - 339	7.1e-49	DNA gyrase/topoisomerase IV, subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23890 AT3G23890
fragaria_vesca	FvH4_3g01730 FvH4_7g01280 FvH4_7g01280
malus_domestica	MD02G1308000.v1.1 MD07G1017700.v1.1
prunus_persica	Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1
pyrus_communis	pycom02g25940 pycom07g01350
rosa_chinensis	RchiOBHm_Chr1g0317031 RchiOBHm_Chr1g0375001 RchiOBHm_Chr1g0380651 RchiOBHm_Chr1g0380661
rosa_laevigata	RLG00000026278 RLG00000026698 RLG00000030631
rosa_multiflora	Rmu_co7960381.1_g000001 Rmu_sc0000554.1_g000003 Rmu_sc0006119.1_g000015 Rmu_sc0006455.1_g000003 Rmu_sc0017099.1_g000004 Rmu_sc0018727.1_g000001 Rmu_sc0023311.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283090 Rroxscaffold_4G00330720
rosa_rugosa	Rorug01G0013900 Rorug01G0387100 Rorug01G0387200 Rorug01G0387300 Rorug01G0423300 Rorug01G0423400 Rorug01G0423400
rosa_samantha	Rh1AG025100 Rh1AG398000 Rh1AG447700 Rh1BG021900 Rh1BG361900 Rh1BG403000 Rh1CG023500 Rh1CG375600 Rh1CG417400 Rh1DG022300 Rh1DG393100 Rh1DG433300
rosa_wichuraiana	Rw1G001740 Rw1G035320 Rw1G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	733
AclI	AACGTT	1 cut(s)	709
AclWI	GGATC	3 cut(s)	827, 860, 945
AcoI	YGGCCR	1 cut(s)	930
AcsI	RAATTY	2 cut(s)	317, 896
AcyI	GRCGYC	1 cut(s)	734
AfaI	GTAC	2 cut(s)	403, 640
AfiI	CCNNNNNNNGG	3 cut(s)	279, 298, 472
AgsI	TTSAA	9 cut(s)	14, 77, 244, 413, 458, 500, 635, 679, 1021
AluBI	AGCT	5 cut(s)	19, 181, 364, 547, 862
AluI	AGCT	5 cut(s)	19, 181, 364, 547, 862
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	346, 351, 681
AlwI	GGATC	3 cut(s)	827, 860, 945
AoxI	GGCC	3 cut(s)	462, 644, 930
ApeKI	GCWGC	2 cut(s)	435, 862
ApoI	RAATTY	2 cut(s)	317, 896
AseI	ATTAAT	2 cut(s)	447, 717
AspLEI	GCGC	1 cut(s)	736
AspS9I	GGNCC	3 cut(s)	463, 644, 657
AvaII	GGWCC	1 cut(s)	657
BanI	GGYRCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	447, 849
BccI	CCATC	3 cut(s)	203, 230, 563
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	346, 351, 681
BfaI	CTAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	737
BisI	GCNGC	2 cut(s)	436, 863
BlsI	GCNGC	2 cut(s)	437, 864
Bme18I	GGWCC	1 cut(s)	657
BmgT120I	GGNCC	3 cut(s)	463, 644, 657
BmiI	GGNNCC	3 cut(s)	521, 735, 744
BmrI	ACTGGG	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	738, 746, 933
BsaWI	WCCGGW	1 cut(s)	764
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 298, 472
Bse1I	ACTGG	2 cut(s)	646, 655
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	738, 746, 933
BseGI	GGATG	4 cut(s)	195, 541, 666, 990
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	279, 298, 472
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	2 cut(s)	646, 655
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	447, 849
BshFI	GGCC	3 cut(s)	464, 646, 932
BshNI	GGYRCC	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	765
BslI	CCNNNNNNNGG	3 cut(s)	279, 298, 472
BsmAI	GTCTC	3 cut(s)	346, 351, 681
BsmBI	CGTCTC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	464, 646, 932
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	4 cut(s)	133, 819, 852, 937
Bsp19I	CCATGG	1 cut(s)	738
BspANI	GGCC	3 cut(s)	464, 646, 932
BspCNI	CTCAG	1 cut(s)	861
BspHI	TCATGA	2 cut(s)	136, 379
BspLI	GGNNCC	3 cut(s)	521, 735, 744
BspPI	GGATC	3 cut(s)	827, 860, 945
BspT107I	GGYRCC	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	646, 655
BssECI	CCNNGG	3 cut(s)	738, 746, 933
BssMI	GATC	4 cut(s)	133, 819, 852, 937
BssNI	GRCGYC	1 cut(s)	734
BssT1I	CCWWGG	2 cut(s)	738, 746
Bst4CI	ACNGT	5 cut(s)	340, 401, 616, 784, 1009
BstACI	GRCGYC	1 cut(s)	734
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	848
BstDSI	CCRYGG	1 cut(s)	738
BstENI	CCTNNNNNAGG	2 cut(s)	277, 296
BstF5I	GGATG	4 cut(s)	195, 541, 666, 990
BstH2I	RGCGCY	1 cut(s)	737
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	4 cut(s)	136, 822, 855, 940
BstMAI	GTCTC	3 cut(s)	346, 351, 681
BstMBI	GATC	4 cut(s)	133, 819, 852, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 320
BstV1I	GCAGC	2 cut(s)	447, 849
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	464, 646, 932
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	4 cut(s)	195, 541, 666, 990
CciI	TCATGA	2 cut(s)	136, 379
CfoI	GCGC	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	463, 644, 657
Csp6I	GTAC	2 cut(s)	402, 639
CviAII	CATG	7 cut(s)	137, 380, 563, 591, 703, 739, 923
CviQI	GTAC	2 cut(s)	402, 639
DdeI	CTNAG	1 cut(s)	848
DinI	GGCGCC	1 cut(s)	735
DpnI	GATC	4 cut(s)	135, 821, 854, 939
DpnII	GATC	4 cut(s)	133, 819, 852, 937
DraI	TTTAAA	1 cut(s)	1056
EaeI	YGGCCR	1 cut(s)	930
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	738, 746
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	2 cut(s)	277, 296
EcoT14I	CCWWGG	2 cut(s)	738, 746
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	735
EheI	GGCGCC	1 cut(s)	735
ErhI	CCWWGG	2 cut(s)	738, 746
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	7 cut(s)	140, 383, 566, 594, 706, 742, 926
FatI	CATG	7 cut(s)	136, 379, 562, 590, 702, 738, 922
FauNDI	CATATG	1 cut(s)	942
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	436, 863
FokI	GGATG	4 cut(s)	182, 548, 653, 977
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	436, 863
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	2 cut(s)	436, 863
HaeII	RGCGCY	1 cut(s)	737
HaeIII	GGCC	3 cut(s)	464, 646, 932
HapII	CCGG	1 cut(s)	765
HhaI	GCGC	1 cut(s)	736
Hin1I	GRCGYC	1 cut(s)	734
Hin1II	CATG	7 cut(s)	140, 383, 566, 594, 706, 742, 926
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HincII	GTYRAC	3 cut(s)	172, 843, 982
HindII	GTYRAC	3 cut(s)	172, 843, 982
HindIII	AAGCTT	2 cut(s)	17, 545
HinfI	GANTC	4 cut(s)	262, 391, 791, 839
HpaII	CCGG	1 cut(s)	765
Hpy166II	GTNNAC	3 cut(s)	172, 843, 982
Hpy188I	TCNGA	3 cut(s)	531, 916, 1003
Hpy188III	TCNNGA	5 cut(s)	137, 380, 395, 551, 850
Hpy8I	GTNNAC	3 cut(s)	172, 843, 982
HpyAV	CCTTC	3 cut(s)	28, 526, 629
HpyCH4III	ACNGT	5 cut(s)	340, 401, 616, 784, 1009
HpyCH4IV	ACGT	2 cut(s)	709, 1051
HpyCH4V	TGCA	6 cut(s)	115, 127, 211, 562, 879, 922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 320
HpyF3I	CTNAG	1 cut(s)	848
HpySE526I	ACGT	2 cut(s)	709, 1051
Hsp92I	GRCGYC	1 cut(s)	734
Hsp92II	CATG	7 cut(s)	140, 383, 566, 594, 706, 742, 926
HspAI	GCGC	1 cut(s)	734
KasI	GGCGCC	1 cut(s)	733
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	133, 819, 852, 937
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	105, 366, 407, 536, 627, 636, 640, 778, 835
Lsp1109I	GCAGC	2 cut(s)	447, 849
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	709, 1051
MaeIII	GTNAC	3 cut(s)	151, 161, 784
MalI	GATC	4 cut(s)	135, 821, 854, 939
MboI	GATC	4 cut(s)	133, 819, 852, 937
MboII	GAAGA	8 cut(s)	40, 43, 299, 491, 578, 845, 971, 1024
MfeI	CAATTG	2 cut(s)	72, 470
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	6 cut(s)	72, 317, 470, 500, 603, 896
Mly113I	GGCGCC	1 cut(s)	734
MlyI	GAGTC	2 cut(s)	400, 848
MmeI	TCCRAC	1 cut(s)	993
MnlI	CCTC	9 cut(s)	61, 94, 133, 258, 283, 670, 749, 928, 1029
MseI	TTAA	6 cut(s)	23, 447, 717, 882, 948, 1055
MslI	CAYNNNNRTG	2 cut(s)	413, 567
MspI	CCGG	1 cut(s)	765
MssI	GTTTAAAC	1 cut(s)	1056
MunI	CAATTG	2 cut(s)	72, 470
MwoI	GCNNNNNNNGC	2 cut(s)	311, 320
NarI	GGCGCC	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	738
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	4 cut(s)	133, 819, 852, 937
NlaIII	CATG	7 cut(s)	140, 383, 566, 594, 706, 742, 926
NlaIV	GGNNCC	3 cut(s)	521, 735, 744
NmeAIII	GCCGAG	2 cut(s)	347, 958
NmuCI	GTSAC	1 cut(s)	161
PagI	TCATGA	2 cut(s)	136, 379
PfeI	GAWTC	2 cut(s)	262, 791
PkrI	GCNGC	2 cut(s)	437, 864
PleI	GAGTC	2 cut(s)	399, 847
PluTI	GGCGCC	1 cut(s)	737
PmeI	GTTTAAAC	1 cut(s)	1056
PpsI	GAGTC	2 cut(s)	399, 847
PshBI	ATTAAT	2 cut(s)	447, 717
Psp124BI	GAGCTC	1 cut(s)	366
Psp1406I	AACGTT	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	521, 735, 744
PspPI	GGNCC	3 cut(s)	463, 644, 657
RsaI	GTAC	2 cut(s)	403, 640
RsaNI	GTAC	2 cut(s)	402, 639
RseI	CAYNNNNRTG	2 cut(s)	413, 567
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	6 cut(s)	23, 447, 717, 882, 948, 1055
SatI	GCNGC	2 cut(s)	436, 863
Sau3AI	GATC	4 cut(s)	133, 819, 852, 937
Sau96I	GGNCC	3 cut(s)	463, 644, 657
SchI	GAGTC	2 cut(s)	400, 848
SduI	GDGCHC	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	735
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	413, 567
Sse9I	AATT	6 cut(s)	72, 317, 470, 500, 603, 896
SspDI	GGCGCC	1 cut(s)	733
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	738, 746
TaaI	ACNGT	5 cut(s)	340, 401, 616, 784, 1009
TaiI	ACGT	2 cut(s)	712, 1054
TasI	AATT	6 cut(s)	72, 317, 470, 500, 603, 896
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	262, 791
Tru1I	TTAA	6 cut(s)	23, 447, 717, 882, 948, 1055
Tru9I	TTAA	6 cut(s)	23, 447, 717, 882, 948, 1055
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	435, 862
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	579, 719, 972
TspGWI	ACGGA	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	657
VspI	ATTAAT	2 cut(s)	447, 717
XagI	CCTNNNNNAGG	2 cut(s)	277, 296
XapI	RAATTY	2 cut(s)	317, 896
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.