Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c | PF02518 | 82 - 174 | 2.2e-07 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| DNA_gyraseB | PF00204 | 272 - 428 | 5.4e-24 | DNA gyrase B |
| Toprim | PF01751 | 458 - 557 | 4.3e-08 | Toprim domain |
| TOPRIM_C | PF16898 | 573 - 700 | 2.6e-51 | C-terminal associated domain of TOPRIM |
| DNA_topoisoIV | PF00521 | 703 - 1162 | 2.4e-119 | DNA gyrase/topoisomerase IV, subunit A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1721, 1845, 2571, 2784 |
| AarI | CACCTGC | 1 cut(s) | 571 |
| AatII | GACGTC | 2 cut(s) | 339, 2738 |
| Acc36I | ACCTGC | 4 cut(s) | 571, 2109, 3589, 3701 |
| Acc65I | GGTACC | 1 cut(s) | 2342 |
| AccB1I | GGYRCC | 3 cut(s) | 503, 2342, 2626 |
| AccI | GTMKAC | 3 cut(s) | 198, 360, 1571 |
| AclWI | GGATC | 9 cut(s) | 262, 296, 1183, 2630, 2643, 2720, 2825, 2838, 3489 |
| AcoI | YGGCCR | 4 cut(s) | 66, 1679, 2916, 4362 |
| AcsI | RAATTY | 9 cut(s) | 1255, 1357, 1695, 2789, 2942, 3011, 3030, 3062, 3841 |
| AcuI | CTGAAG | 5 cut(s) | 1298, 2829, 2957, 3882, 4284 |
| AcyI | GRCGYC | 3 cut(s) | 336, 504, 2735 |
| AflII | CTTAAG | 3 cut(s) | 1204, 1580, 3052 |
| AflIII | ACRYGT | 1 cut(s) | 4101 |
| AgeI | ACCGGT | 1 cut(s) | 482 |
| AjiI | CACGTC | 1 cut(s) | 1866 |
| AjnI | CCWGG | 5 cut(s) | 653, 2014, 2140, 2639, 4127 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2819, 2851, 3074, 3106 |
| AleI | CACNNNNGTG | 2 cut(s) | 2247, 2895 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 509, 541 |
| Alw21I | GWGCWC | 5 cut(s) | 135, 2380, 2555, 3210, 3334 |
| Alw26I | GTCTC | 6 cut(s) | 539, 923, 1386, 2574, 2726, 3837 |
| AlwI | GGATC | 9 cut(s) | 262, 296, 1183, 2630, 2643, 2720, 2825, 2838, 3489 |
| Ama87I | CYCGRG | 1 cut(s) | 2795 |
| AoxI | GGCC | 8 cut(s) | 66, 1679, 2916, 3399, 3423, 3633, 4081, 4362 |
| ApoI | RAATTY | 9 cut(s) | 1255, 1357, 1695, 2789, 2942, 3011, 3030, 3062, 3841 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3894, 3920, 3926, 3952 |
| AsiGI | ACCGGT | 1 cut(s) | 482 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 521, 1357, 3030, 3221 |
| Asp718I | GGTACC | 1 cut(s) | 2342 |
| AspLEI | GCGC | 3 cut(s) | 374, 506, 4043 |
| AspS9I | GGNCC | 8 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3400, 3713 |
| AsuC2I | CCSGG | 3 cut(s) | 65, 243, 419 |
| AsuHPI | GGTGA | 8 cut(s) | 223, 319, 481, 580, 2261, 2627, 4128, 4324 |
| AvaI | CYCGRG | 1 cut(s) | 2795 |
| AvaII | GGWCC | 7 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3713 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3849, 3882 |
| BalI | TGGCCA | 1 cut(s) | 1681 |
| BamHI | GGATCC | 2 cut(s) | 2635, 2830 |
| BanI | GGYRCC | 3 cut(s) | 503, 2342, 2626 |
| BanII | GRGCYC | 2 cut(s) | 2555, 3210 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 242, 274 |
| BauI | CACGAG | 1 cut(s) | 2968 |
| BbsI | GAAGAC | 2 cut(s) | 482, 1232 |
| Bbv12I | GWGCWC | 5 cut(s) | 135, 2380, 2555, 3210, 3334 |
| BceAI | ACGGC | 5 cut(s) | 223, 511, 517, 564, 3302 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 79, 113, 2959, 2993, 4367, 4401 |
| BciT130I | CCWGG | 5 cut(s) | 655, 2016, 2142, 2641, 4129 |
| BciVI | GTATCC | 1 cut(s) | 3850 |
| BclI | TGATCA | 4 cut(s) | 1618, 1900, 2029, 2863 |
| BcnI | CCSGG | 3 cut(s) | 65, 243, 419 |
| BcoDI | GTCTC | 6 cut(s) | 539, 923, 1386, 2574, 2726, 3837 |
| BfaI | CTAG | 5 cut(s) | 855, 1494, 3254, 3920, 4299 |
| BfmI | CTRYAG | 3 cut(s) | 1553, 2874, 3729 |
| BfoI | RGCGCY | 2 cut(s) | 375, 507 |
| BfrI | CTTAAG | 3 cut(s) | 1204, 1580, 3052 |
| BfuAI | ACCTGC | 4 cut(s) | 571, 2109, 3589, 3701 |
| BfuI | GTATCC | 1 cut(s) | 3850 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3407 |
| BglII | AGATCT | 1 cut(s) | 255 |
| BmcAI | AGTACT | 2 cut(s) | 2269, 2872 |
| Bme1390I | CCNGG | 8 cut(s) | 65, 243, 419, 655, 2016, 2142, 2641, 4129 |
| Bme18I | GGWCC | 7 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3713 |
| BmeT110I | CYCGRG | 1 cut(s) | 2795 |
| BmgBI | CACGTC | 1 cut(s) | 1866 |
| BmgT120I | GGNCC | 8 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3400, 3713 |
| BmrFI | CCNGG | 8 cut(s) | 65, 243, 419, 655, 2016, 2142, 2641, 4129 |
| BmrI | ACTGGG | 1 cut(s) | 2200 |
| BmsI | GCATC | 9 cut(s) | 360, 714, 743, 1324, 2608, 3478, 4016, 4175, 4375 |
| BmuI | ACTGGG | 1 cut(s) | 2200 |
| BpiI | GAAGAC | 2 cut(s) | 482, 1232 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2789, 2821 |
| BpmI | CTGGAG | 7 cut(s) | 149, 396, 1368, 2037, 3006, 3536, 4266 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1401, 4140 |
| BpuEI | CTTGAG | 7 cut(s) | 1349, 1609, 2760, 3056, 3122, 3224, 3812 |
| BpuMI | CCSGG | 3 cut(s) | 65, 243, 419 |
| BsaAI | YACGTR | 2 cut(s) | 663, 997 |
| BsaHI | GRCGYC | 3 cut(s) | 336, 504, 2735 |
| BsaWI | WCCGGW | 1 cut(s) | 482 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 9, 39, 369, 399, 509, 539 |
| Bse118I | RCCGGY | 2 cut(s) | 482, 4360 |
| Bse3DI | GCAATG | 3 cut(s) | 1419, 1822, 2628 |
| BseBI | CCWGG | 5 cut(s) | 655, 2016, 2142, 2641, 4129 |
| BseGI | GGATG | 6 cut(s) | 305, 758, 882, 1339, 2286, 2437 |
| BseMI | GCAATG | 3 cut(s) | 1419, 1822, 2628 |
| BseRI | GAGGAG | 5 cut(s) | 416, 2915, 3554, 3717, 3720 |
| BseX3I | CGGCCG | 1 cut(s) | 66 |
| BseYI | CCCAGC | 2 cut(s) | 58, 4018 |
| Bsh1285I | CGRYCG | 4 cut(s) | 9, 69, 99, 171 |
| BshFI | GGCC | 8 cut(s) | 68, 1681, 2918, 3401, 3425, 3635, 4083, 4364 |
| BshNI | GGYRCC | 3 cut(s) | 503, 2342, 2626 |
| BshTI | ACCGGT | 1 cut(s) | 482 |
| BsiEI | CGRYCG | 4 cut(s) | 9, 69, 99, 171 |
| BsiHKAI | GWGCWC | 5 cut(s) | 135, 2380, 2555, 3210, 3334 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2795 |
| BsiSI | CCGG | 6 cut(s) | 65, 243, 419, 483, 846, 4361 |
| BslFI | GGGAC | 7 cut(s) | 401, 782, 1662, 1895, 2554, 3388, 3988 |
| BsmAI | GTCTC | 6 cut(s) | 539, 923, 1386, 2574, 2726, 3837 |
| BsmBI | CGTCTC | 3 cut(s) | 539, 2726, 3837 |
| BsmFI | GGGAC | 7 cut(s) | 401, 782, 1662, 1895, 2554, 3388, 3988 |
| BsmI | GAATGC | 3 cut(s) | 564, 1057, 2230 |
| BsnI | GGCC | 8 cut(s) | 68, 1681, 2918, 3401, 3425, 3635, 4083, 4364 |
| BsoBI | CYCGRG | 1 cut(s) | 2795 |
| Bsp1286I | GDGCHC | 5 cut(s) | 135, 2380, 2555, 3210, 3334 |
| Bsp1407I | TGTACA | 1 cut(s) | 249 |
| Bsp19I | CCATGG | 4 cut(s) | 309, 2091, 2245, 3363 |
| BspANI | GGCC | 8 cut(s) | 68, 1681, 2918, 3401, 3425, 3635, 4083, 4364 |
| BspMAI | CTGCAG | 2 cut(s) | 1557, 3733 |
| BspMI | ACCTGC | 4 cut(s) | 571, 2109, 3589, 3701 |
| BspPI | GGATC | 9 cut(s) | 262, 296, 1183, 2630, 2643, 2720, 2825, 2838, 3489 |
| BspQI | GCTCTTC | 2 cut(s) | 113, 1985 |
| BspT107I | GGYRCC | 3 cut(s) | 503, 2342, 2626 |
| BspTI | CTTAAG | 3 cut(s) | 1204, 1580, 3052 |
| BsrDI | GCAATG | 3 cut(s) | 1419, 1822, 2628 |
| BsrFI | RCCGGY | 2 cut(s) | 482, 4360 |
| BsrGI | TGTACA | 1 cut(s) | 249 |
| BssAI | RCCGGY | 2 cut(s) | 482, 4360 |
| BssNAI | GTATAC | 1 cut(s) | 1572 |
| BssNI | GRCGYC | 3 cut(s) | 336, 504, 2735 |
| BssSI | CACGAG | 1 cut(s) | 2968 |
| BssT1I | CCWWGG | 8 cut(s) | 309, 757, 2091, 2245, 2826, 3145, 3363, 3461 |
| Bst1107I | GTATAC | 1 cut(s) | 1572 |
| Bst2BI | CACGAG | 1 cut(s) | 2968 |
| Bst2UI | CCWGG | 5 cut(s) | 655, 2016, 2142, 2641, 4129 |
| Bst6I | CTCTTC | 5 cut(s) | 113, 1977, 1985, 3294, 4028 |
| BstACI | GRCGYC | 3 cut(s) | 336, 504, 2735 |
| BstAFI | CTTAAG | 3 cut(s) | 1204, 1580, 3052 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 139, 2201 |
| BstAUI | TGTACA | 1 cut(s) | 249 |
| BstBAI | YACGTR | 2 cut(s) | 663, 997 |
| BstC8I | GCNNGC | 7 cut(s) | 125, 1959, 1997, 3850, 4113, 4322, 4362 |
| BstDSI | CCRYGG | 5 cut(s) | 309, 2091, 2245, 3363, 3614 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2173, 2644 |
| BstF5I | GGATG | 6 cut(s) | 305, 758, 882, 1339, 2286, 2437 |
| BstH2I | RGCGCY | 2 cut(s) | 375, 507 |
| BstHHI | GCGC | 3 cut(s) | 374, 506, 4043 |
| BstMAI | GTCTC | 6 cut(s) | 539, 923, 1386, 2574, 2726, 3837 |
| BstMCI | CGRYCG | 4 cut(s) | 9, 69, 99, 171 |
| BstNI | CCWGG | 5 cut(s) | 655, 2016, 2142, 2641, 4129 |
| BstNSI | RCATGY | 1 cut(s) | 4105 |
| BstSCI | CCNGG | 8 cut(s) | 63, 241, 417, 653, 2014, 2140, 2639, 4127 |
| BstSFI | CTRYAG | 3 cut(s) | 1553, 2874, 3729 |
| BstSNI | TACGTA | 2 cut(s) | 663, 997 |
| BstV2I | GAAGAC | 2 cut(s) | 482, 1232 |
| BstX2I | RGATCY | 7 cut(s) | 255, 267, 301, 1175, 2635, 2830, 3481 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 598, 2213 |
| BstYI | RGATCY | 7 cut(s) | 255, 267, 301, 1175, 2635, 2830, 3481 |
| BstZ17I | GTATAC | 1 cut(s) | 1572 |
| BstZI | CGGCCG | 1 cut(s) | 66 |
| BsuI | GTATCC | 1 cut(s) | 3850 |
| BsuRI | GGCC | 8 cut(s) | 68, 1681, 2918, 3401, 3425, 3635, 4083, 4364 |
| BtgI | CCRYGG | 5 cut(s) | 309, 2091, 2245, 3363, 3614 |
| BtgZI | GCGATG | 3 cut(s) | 1668, 4152, 4251 |
| BtrI | CACGTC | 1 cut(s) | 1866 |
| BtsCI | GGATG | 6 cut(s) | 305, 758, 882, 1339, 2286, 2437 |
| BtsI | GCAGTG | 1 cut(s) | 2700 |
| BtsIMutI | CAGTG | 7 cut(s) | 774, 2062, 2700, 2866, 3467, 4260, 4372 |
| BveI | ACCTGC | 4 cut(s) | 571, 2109, 3589, 3701 |
| Cac8I | GCNNGC | 7 cut(s) | 125, 1959, 1997, 3850, 4113, 4322, 4362 |
| CfoI | GCGC | 3 cut(s) | 374, 506, 4043 |
| Cfr10I | RCCGGY | 2 cut(s) | 482, 4360 |
| Cfr13I | GGNCC | 8 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3400, 3713 |
| CseI | GACGC | 2 cut(s) | 346, 498 |
| CspAI | ACCGGT | 1 cut(s) | 482 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1804, 1839 |
| DinI | GGCGCC | 1 cut(s) | 505 |
| DraI | TTTAAA | 2 cut(s) | 1261, 2947 |
| EaeI | YGGCCR | 4 cut(s) | 66, 1679, 2916, 4362 |
| EagI | CGGCCG | 1 cut(s) | 66 |
| Eam1104I | CTCTTC | 5 cut(s) | 113, 1977, 1985, 3294, 4028 |
| EarI | CTCTTC | 5 cut(s) | 113, 1977, 1985, 3294, 4028 |
| EciI | GGCGGA | 2 cut(s) | 993, 2111 |
| Ecl136II | GAGCTC | 2 cut(s) | 2553, 3208 |
| EclXI | CGGCCG | 1 cut(s) | 66 |
| Eco105I | TACGTA | 2 cut(s) | 663, 997 |
| Eco130I | CCWWGG | 8 cut(s) | 309, 757, 2091, 2245, 2826, 3145, 3363, 3461 |
| Eco24I | GRGCYC | 2 cut(s) | 2555, 3210 |
| Eco32I | GATATC | 1 cut(s) | 2881 |
| Eco47I | GGWCC | 7 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3713 |
| Eco52I | CGGCCG | 1 cut(s) | 66 |
| Eco53kI | GAGCTC | 2 cut(s) | 2553, 3208 |
| Eco57I | CTGAAG | 5 cut(s) | 1298, 2829, 2957, 3882, 4284 |
| Eco88I | CYCGRG | 1 cut(s) | 2795 |
| EcoICRI | GAGCTC | 2 cut(s) | 2553, 3208 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2173, 2644 |
| EcoO109I | RGGNCCY | 3 cut(s) | 796, 3375, 3400 |
| EcoRI | GAATTC | 3 cut(s) | 1357, 2789, 3062 |
| EcoRII | CCWGG | 5 cut(s) | 653, 2014, 2140, 2639, 4127 |
| EcoRV | GATATC | 1 cut(s) | 2881 |
| EcoT14I | CCWWGG | 8 cut(s) | 309, 757, 2091, 2245, 2826, 3145, 3363, 3461 |
| EcoT38I | GRGCYC | 2 cut(s) | 2555, 3210 |
| EgeI | GGCGCC | 1 cut(s) | 505 |
| EheI | GGCGCC | 1 cut(s) | 505 |
| ErhI | CCWWGG | 8 cut(s) | 309, 757, 2091, 2245, 2826, 3145, 3363, 3461 |
| Esp3I | CGTCTC | 3 cut(s) | 539, 2726, 3837 |
| FaqI | GGGAC | 7 cut(s) | 401, 782, 1662, 1895, 2554, 3388, 3988 |
| FbaI | TGATCA | 4 cut(s) | 1618, 1900, 2029, 2863 |
| FblI | GTMKAC | 3 cut(s) | 198, 360, 1571 |
| FokI | GGATG | 6 cut(s) | 292, 765, 889, 1346, 2293, 2444 |
| FriOI | GRGCYC | 2 cut(s) | 2555, 3210 |
| FspBI | CTAG | 5 cut(s) | 855, 1494, 3254, 3920, 4299 |
| GlaI | GCGC | 3 cut(s) | 373, 505, 4042 |
| GsaI | CCCAGC | 2 cut(s) | 62, 4022 |
| GsuI | CTGGAG | 7 cut(s) | 149, 396, 1368, 2037, 3006, 3536, 4266 |
| HaeII | RGCGCY | 2 cut(s) | 375, 507 |
| HaeIII | GGCC | 8 cut(s) | 68, 1681, 2918, 3401, 3425, 3635, 4083, 4364 |
| HapII | CCGG | 6 cut(s) | 65, 243, 419, 483, 846, 4361 |
| HgaI | GACGC | 2 cut(s) | 346, 498 |
| HhaI | GCGC | 3 cut(s) | 374, 506, 4043 |
| Hin1I | GRCGYC | 3 cut(s) | 336, 504, 2735 |
| Hin6I | GCGC | 3 cut(s) | 372, 504, 4041 |
| HinP1I | GCGC | 3 cut(s) | 372, 504, 4041 |
| HincII | GTYRAC | 2 cut(s) | 220, 826 |
| HindII | GTYRAC | 2 cut(s) | 220, 826 |
| HindIII | AAGCTT | 4 cut(s) | 509, 1325, 2042, 4088 |
| HpaII | CCGG | 6 cut(s) | 65, 243, 419, 483, 846, 4361 |
| HphI | GGTGA | 8 cut(s) | 223, 319, 481, 580, 2261, 2627, 4128, 4324 |
| Hpy99I | CGWCG | 5 cut(s) | 341, 389, 464, 929, 3932 |
| HpyCH4IV | ACGT | 6 cut(s) | 237, 336, 662, 996, 1865, 2735 |
| HpySE526I | ACGT | 6 cut(s) | 237, 336, 662, 996, 1865, 2735 |
| Hsp92I | GRCGYC | 3 cut(s) | 336, 504, 2735 |
| HspAI | GCGC | 3 cut(s) | 372, 504, 4041 |
| KasI | GGCGCC | 1 cut(s) | 503 |
| KflI | GGGWCCC | 1 cut(s) | 796 |
| KpnI | GGTACC | 1 cut(s) | 2346 |
| KroI | GCCGGC | 1 cut(s) | 4360 |
| KroNI | GCCGGC | 1 cut(s) | 4362 |
| Ksp22I | TGATCA | 4 cut(s) | 1618, 1900, 2029, 2863 |
| LguI | GCTCTTC | 2 cut(s) | 113, 1985 |
| LweI | GCATC | 9 cut(s) | 360, 714, 743, 1324, 2608, 3478, 4016, 4175, 4375 |
| MaeI | CTAG | 5 cut(s) | 855, 1494, 3254, 3920, 4299 |
| MaeII | ACGT | 6 cut(s) | 237, 336, 662, 996, 1865, 2735 |
| MaeIII | GTNAC | 8 cut(s) | 325, 658, 997, 2057, 2348, 2736, 3341, 3465 |
| MfeI | CAATTG | 2 cut(s) | 1950, 3369 |
| MflI | RGATCY | 7 cut(s) | 255, 267, 301, 1175, 2635, 2830, 3481 |
| MhlI | GDGCHC | 5 cut(s) | 135, 2380, 2555, 3210, 3334 |
| MlsI | TGGCCA | 1 cut(s) | 1681 |
| MluNI | TGGCCA | 1 cut(s) | 1681 |
| Mly113I | GGCGCC | 1 cut(s) | 504 |
| MlyI | GAGTC | 9 cut(s) | 308, 925, 1388, 1644, 2266, 2693, 2767, 2807, 3821 |
| MmeI | TCCRAC | 5 cut(s) | 169, 2531, 3087, 3235, 4401 |
| Mox20I | TGGCCA | 1 cut(s) | 1681 |
| MroNI | GCCGGC | 1 cut(s) | 4360 |
| MroXI | GAANNNNTTC | 4 cut(s) | 521, 1357, 3030, 3221 |
| MscI | TGGCCA | 1 cut(s) | 1681 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1449, 1749, 2247, 2279, 2373, 2895 |
| Msp20I | TGGCCA | 1 cut(s) | 1681 |
| MspA1I | CMGCKG | 2 cut(s) | 127, 4022 |
| MspCI | CTTAAG | 3 cut(s) | 1204, 1580, 3052 |
| MspI | CCGG | 6 cut(s) | 65, 243, 419, 483, 846, 4361 |
| MspR9I | CCNGG | 8 cut(s) | 65, 243, 419, 655, 2016, 2142, 2641, 4129 |
| MunI | CAATTG | 2 cut(s) | 1950, 3369 |
| Mva1269I | GAATGC | 3 cut(s) | 564, 1057, 2230 |
| MvaI | CCWGG | 5 cut(s) | 655, 2016, 2142, 2641, 4129 |
| NaeI | GCCGGC | 1 cut(s) | 4362 |
| NarI | GGCGCC | 1 cut(s) | 504 |
| NciI | CCSGG | 3 cut(s) | 65, 243, 419 |
| NcoI | CCATGG | 4 cut(s) | 309, 2091, 2245, 3363 |
| NgoMIV | GCCGGC | 1 cut(s) | 4360 |
| NmuCI | GTSAC | 5 cut(s) | 325, 2057, 2736, 3341, 3465 |
| NspI | RCATGY | 1 cut(s) | 4105 |
| OliI | CACNNNNGTG | 2 cut(s) | 2247, 2895 |
| PaeR7I | CTCGAG | 1 cut(s) | 2795 |
| PaqCI | CACCTGC | 1 cut(s) | 571 |
| PciI | ACATGT | 1 cut(s) | 4101 |
| PciSI | GCTCTTC | 2 cut(s) | 113, 1985 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 48 |
| PctI | GAATGC | 3 cut(s) | 564, 1057, 2230 |
| PdiI | GCCGGC | 1 cut(s) | 4362 |
| PdmI | GAANNNNTTC | 4 cut(s) | 521, 1357, 3030, 3221 |
| PfeI | GAWTC | 7 cut(s) | 391, 1130, 1543, 2155, 4315, 4346, 4373 |
| PflFI | GACNNNGTC | 1 cut(s) | 2723 |
| PfoI | TCCNGGA | 2 cut(s) | 241, 417 |
| PinAI | ACCGGT | 1 cut(s) | 482 |
| Ple19I | CGATCG | 3 cut(s) | 9, 99, 171 |
| PleI | GAGTC | 9 cut(s) | 308, 924, 1388, 1644, 2265, 2692, 2767, 2806, 3821 |
| PluTI | GGCGCC | 1 cut(s) | 507 |
| PpsI | GAGTC | 9 cut(s) | 308, 924, 1388, 1644, 2265, 2692, 2767, 2806, 3821 |
| Ppu21I | YACGTR | 2 cut(s) | 663, 997 |
| PpuMI | RGGWCCY | 2 cut(s) | 796, 3375 |
| PscI | ACATGT | 1 cut(s) | 4101 |
| PsiI | TTATAA | 4 cut(s) | 1721, 1845, 2571, 2784 |
| Psp124BI | GAGCTC | 2 cut(s) | 2555, 3210 |
| Psp5II | RGGWCCY | 2 cut(s) | 796, 3375 |
| Psp6I | CCWGG | 5 cut(s) | 653, 2014, 2140, 2639, 4127 |
| PspFI | CCCAGC | 2 cut(s) | 58, 4018 |
| PspGI | CCWGG | 5 cut(s) | 653, 2014, 2140, 2639, 4127 |
| PspPI | GGNCC | 8 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3400, 3713 |
| PspPPI | RGGWCCY | 2 cut(s) | 796, 3375 |
| PspXI | VCTCGAGB | 1 cut(s) | 2795 |
| PstI | CTGCAG | 2 cut(s) | 1557, 3733 |
| PsuI | RGATCY | 7 cut(s) | 255, 267, 301, 1175, 2635, 2830, 3481 |
| PsyI | GACNNNGTC | 1 cut(s) | 2723 |
| PvuI | CGATCG | 3 cut(s) | 9, 99, 171 |
| PvuII | CAGCTG | 1 cut(s) | 127 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1449, 1749, 2247, 2279, 2373, 2895 |
| SacI | GAGCTC | 2 cut(s) | 2555, 3210 |
| SapI | GCTCTTC | 2 cut(s) | 113, 1985 |
| Sau96I | GGNCC | 8 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3400, 3713 |
| ScaI | AGTACT | 2 cut(s) | 2269, 2872 |
| SchI | GAGTC | 9 cut(s) | 308, 925, 1388, 1644, 2266, 2693, 2767, 2807, 3821 |
| ScrFI | CCNGG | 8 cut(s) | 65, 243, 419, 655, 2016, 2142, 2641, 4129 |
| SduI | GDGCHC | 5 cut(s) | 135, 2380, 2555, 3210, 3334 |
| SfaNI | GCATC | 9 cut(s) | 360, 714, 743, 1324, 2608, 3478, 4016, 4175, 4375 |
| SfcI | CTRYAG | 3 cut(s) | 1553, 2874, 3729 |
| SfoI | GGCGCC | 1 cut(s) | 505 |
| Sfr274I | CTCGAG | 1 cut(s) | 2795 |
| SgrAI | CRCCGGYG | 1 cut(s) | 482 |
| SinI | GGWCC | 7 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3713 |
| SlaI | CTCGAG | 1 cut(s) | 2795 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1449, 1749, 2247, 2279, 2373, 2895 |
| SnaBI | TACGTA | 2 cut(s) | 663, 997 |
| SspDI | GGCGCC | 1 cut(s) | 503 |
| SspI | AATATT | 1 cut(s) | 1841 |
| SspMI | CTAG | 5 cut(s) | 855, 1494, 3254, 3920, 4299 |
| SstI | GAGCTC | 2 cut(s) | 2555, 3210 |
| StyD4I | CCNGG | 8 cut(s) | 63, 241, 417, 653, 2014, 2140, 2639, 4127 |
| StyI | CCWWGG | 8 cut(s) | 309, 757, 2091, 2245, 2826, 3145, 3363, 3461 |
| TaiI | ACGT | 6 cut(s) | 240, 339, 665, 999, 1868, 2738 |
| TatI | WGTACW | 6 cut(s) | 249, 1370, 2020, 2052, 2267, 2870 |
| TauI | GCSGC | 8 cut(s) | 78, 81, 84, 284, 2918, 3956, 4004, 4025 |
| TfiI | GAWTC | 7 cut(s) | 391, 1130, 1543, 2155, 4315, 4346, 4373 |
| TscAI | CASTG | 7 cut(s) | 774, 2062, 2707, 2866, 3474, 4267, 4372 |
| TseFI | GTSAC | 5 cut(s) | 325, 2057, 2736, 3341, 3465 |
| Tsp45I | GTSAC | 5 cut(s) | 325, 2057, 2736, 3341, 3465 |
| TspGWI | ACGGA | 7 cut(s) | 570, 801, 1449, 2106, 2753, 3349, 3631 |
| TspRI | CASTG | 7 cut(s) | 774, 2062, 2707, 2866, 3474, 4267, 4372 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2723 |
| Vha464I | CTTAAG | 3 cut(s) | 1204, 1580, 3052 |
| VpaK11BI | GGWCC | 7 cut(s) | 651, 796, 1624, 1830, 2098, 3375, 3713 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2173, 2644 |
| XapI | RAATTY | 9 cut(s) | 1255, 1357, 1695, 2789, 2942, 3011, 3030, 3062, 3841 |
| XbaI | TCTAGA | 1 cut(s) | 854 |
| XceI | RCATGY | 1 cut(s) | 4105 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 2637, 2766, 3468, 3661 |
| XhoI | CTCGAG | 1 cut(s) | 2795 |
| XmiI | GTMKAC | 3 cut(s) | 198, 360, 1571 |
| XmnI | GAANNNNTTC | 4 cut(s) | 521, 1357, 3030, 3221 |
| XspI | CTAG | 5 cut(s) | 855, 1494, 3254, 3920, 4299 |
| ZraI | GACGTC | 2 cut(s) | 337, 2736 |
| ZrmI | AGTACT | 2 cut(s) | 2269, 2872 |