Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001532

Physical Location & Seq

Genomic Coordinates Forward (+)

1851440 .. 1852416

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGTGGAGGTGCCGGAGGACGCCCCCGCCCCCGGAGTCGACGGCGACATCGCCGAAGAGGTGGAGTGCGATGAGACGTGGCTAGAGGAAGCTGAATTCGCCGGAGGGCGCAACTCTCAAGAGTGTACCTTGATTTTGACACAAGAAATGTCAACTTCAAGTCTCGCAACATTCAACGACGATGAGAATGGAGGCTCAGGCGATGAGAACGACGACATCGAGATCATAGAAGCTGACGAGAACGACGACGACGACGACGGCGACGAGCTCATCCACGAAGTCGACAGCGACGAATCTTTGTCGGAGGAAGAGGTGGAGTGCGATGAGACGTGGCTAGAGGAAGCTGAATTCGCCGGAGGGCGCAACTCTCAAGAGTGTACCTTGATTTTGACACAAGAAATGTCAACTTCAAGTCTCGCAGTAAGCACTTACGAGTCACGACTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.37

Weight (kDa)

4.05

Isoelectric Point (pI)

80.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23890 AT3G23890
fragaria_vesca	FvH4_3g01730 FvH4_7g01280 FvH4_7g01280
malus_domestica	MD02G1308000.v1.1 MD07G1017700.v1.1
prunus_persica	Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1 Prupe.2G017500_v2.0.a1
pyrus_communis	pycom02g25940 pycom07g01350
rosa_chinensis	RchiOBHm_Chr1g0317031 RchiOBHm_Chr1g0375001 RchiOBHm_Chr1g0380651 RchiOBHm_Chr1g0380661
rosa_laevigata	RLG00000026278 RLG00000026698 RLG00000030631
rosa_multiflora	Rmu_co7960381.1_g000001 Rmu_sc0000554.1_g000003 Rmu_sc0006119.1_g000015 Rmu_sc0006455.1_g000003 Rmu_sc0017099.1_g000004 Rmu_sc0018727.1_g000001 Rmu_sc0023311.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283090 Rroxscaffold_4G00330720
rosa_rugosa	Rorug01G0013900 Rorug01G0387100 Rorug01G0387200 Rorug01G0387300 Rorug01G0423300 Rorug01G0423400 Rorug01G0423400
rosa_samantha	Rh1AG025100 Rh1AG398000 Rh1AG447700 Rh1BG021900 Rh1BG361900 Rh1BG403000 Rh1CG023500 Rh1CG375600 Rh1CG417400 Rh1DG022300 Rh1DG393100 Rh1DG433300
rosa_wichuraiana	Rw1G001740 Rw1G035320 Rw1G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	2 cut(s)	42, 285
AciI	CCGC	2 cut(s)	5, 30
AcsI	RAATTY	2 cut(s)	98, 350
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	130, 382
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	162, 178, 414
AjiI	CACGTC	2 cut(s)	81, 333
AluBI	AGCT	4 cut(s)	95, 236, 271, 347
AluI	AGCT	4 cut(s)	95, 236, 271, 347
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	4 cut(s)	71, 170, 323, 422
ApoI	RAATTY	2 cut(s)	98, 350
AspLEI	GCGC	2 cut(s)	114, 366
AsuC2I	CCSGG	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BceAI	ACGGC	2 cut(s)	61, 277
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	4 cut(s)	71, 170, 323, 422
BfaI	CTAG	2 cut(s)	86, 338
Bme1390I	CCNGG	1 cut(s)	36
BmgBI	CACGTC	2 cut(s)	81, 333
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	199
BpuEI	CTTGAG	2 cut(s)	105, 357
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	17, 36, 105, 357
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	4 cut(s)	71, 170, 323, 422
BsmBI	CGTCTC	2 cut(s)	71, 323
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	5, 30
BspCNI	CTCAG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	54, 306
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	114, 366
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	4 cut(s)	71, 170, 323, 422
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 353
BstSCI	CCNGG	1 cut(s)	34
BtgZI	GCGATG	4 cut(s)	37, 87, 219, 339
BtrI	CACGTC	2 cut(s)	81, 333
BtsCI	GGATG	1 cut(s)	273
CfoI	GCGC	2 cut(s)	114, 366
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	129, 381
CviJI	RGCY	7 cut(s)	85, 95, 198, 236, 271, 337, 347
CviKI_1	RGCY	7 cut(s)	85, 95, 198, 236, 271, 337, 347
CviQI	GTAC	2 cut(s)	129, 381
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	54, 306
EarI	CTCTTC	2 cut(s)	54, 306
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoRI	GAATTC	2 cut(s)	98, 350
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	2 cut(s)	71, 323
FaiI	YATR	1 cut(s)	230
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	2 cut(s)	42, 285
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	86, 338
GlaI	GCGC	2 cut(s)	113, 365
HapII	CCGG	4 cut(s)	17, 36, 105, 357
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	114, 366
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	2 cut(s)	112, 364
HinP1I	GCGC	2 cut(s)	112, 364
HincII	GTYRAC	4 cut(s)	43, 156, 286, 408
HindII	GTYRAC	4 cut(s)	43, 156, 286, 408
HinfI	GANTC	3 cut(s)	39, 296, 437
HpaII	CCGG	4 cut(s)	17, 36, 105, 357
Hpy166II	GTNNAC	6 cut(s)	43, 129, 156, 286, 381, 408
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	122, 223, 374, 441
Hpy8I	GTNNAC	6 cut(s)	43, 129, 156, 286, 381, 408
HpyCH4IV	ACGT	2 cut(s)	80, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 353
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	80, 332
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	2 cut(s)	112, 364
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	30, 49, 118, 186, 370
MaeI	CTAG	2 cut(s)	86, 338
MaeII	ACGT	2 cut(s)	80, 332
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	71, 323
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	98, 350
MlyI	GAGTC	2 cut(s)	48, 446
MmeI	TCCRAC	1 cut(s)	285
MseI	TTAA	1 cut(s)	451
MspI	CCGG	4 cut(s)	17, 36, 105, 357
MspR9I	CCNGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	101, 353
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	7 cut(s)	219, 246, 252, 255, 261, 264, 291
PfeI	GAWTC	1 cut(s)	296
PleI	GAGTC	2 cut(s)	47, 445
PpsI	GAGTC	2 cut(s)	47, 445
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	15
RsaI	GTAC	2 cut(s)	130, 382
RsaNI	GTAC	2 cut(s)	129, 381
SacI	GAGCTC	1 cut(s)	273
SalI	GTCGAC	2 cut(s)	41, 284
SaqAI	TTAA	1 cut(s)	451
Sau3AI	GATC	1 cut(s)	225
SchI	GAGTC	2 cut(s)	48, 446
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	120, 372
SmoI	CTYRAG	2 cut(s)	120, 372
Sse9I	AATT	2 cut(s)	98, 350
SsiI	CCGC	2 cut(s)	5, 30
SspMI	CTAG	2 cut(s)	86, 338
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	34
TaiI	ACGT	2 cut(s)	83, 335
TaqI	TCGA	3 cut(s)	42, 222, 285
TasI	AATT	2 cut(s)	98, 350
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	438
XapI	RAATTY	2 cut(s)	98, 350
XmiI	GTMKAC	2 cut(s)	42, 285
XspI	CTAG	2 cut(s)	86, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.