Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Forward (+)

21134776 .. 21135532

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCGAGTCACCCTCCGAGTCAACCTCCGCGTTGCTTAGCACCACCACATCCACTAAGCCCGCTCAATCCGGGACTGTTTCTATTTCAAGCCCTCAAAGTCACCATGTCGTCTTCCCTGAGATCCCAATCGAGATCATCAATGAAGAAGAAATAGTTATTCTCGATGCAGCTCTTGCAGCCTCCCACTCCATCCTACCTTCCGTCATTCGTTCTGTTTCTCCGTCACAGATGATCGCCGGCGGAAGCCCAATAACTATTCGTTCAATTACTCTTTTCTCCAAGAGGAAATTATCAGCTTGTTTATATATCGAAGAGTCTTATCTACATCGATTTAGAAGAAATCAGTCTTTAGGTGTCACAGATCTCACCGGTACTGTACGTTTGTTTTATATCACAGTCATATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045145 GO:0046483 GO:0046983 GO:0048037 GO:0050896 GO:0051536 GO:0051539 GO:0051540 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo5

Protein Analysis

136

Amino Acids

14.69

Weight (kDa)

6.4

Isoelectric Point (pI)

90.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	65
AccII	CGCG	1 cut(s)	32
AciI	CCGC	3 cut(s)	30, 63, 243
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	376, 381
AgeI	ACCGGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	90, 267
AluBI	AGCT	2 cut(s)	173, 299
AluI	AGCT	2 cut(s)	173, 299
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	170, 179
AsiGI	ACCGGT	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	3, 95, 361
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	182, 191
BccI	CCATC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	2 cut(s)	171, 180
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	2 cut(s)	172, 181
Bme1390I	CCNGG	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	3 cut(s)	31, 11, 43
Bpu1102I	GCTNAGC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	371
Bse118I	RCCGGY	2 cut(s)	239, 371
Bse8I	GATNNNNATC	1 cut(s)	128
BseCI	ATCGAT	1 cut(s)	331
BseGI	GGATG	2 cut(s)	50, 192
BseJI	GATNNNNATC	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	182, 191
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	72, 240, 372
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	123, 135, 234, 364
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	3 cut(s)	30, 63, 243
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	239, 371
BssAI	RCCGGY	2 cut(s)	239, 371
BssMI	GATC	4 cut(s)	123, 135, 234, 364
Bst4CI	ACNGT	3 cut(s)	79, 379, 400
Bst6I	CTCTTC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	63, 241
BstDEI	CTNAG	3 cut(s)	38, 57, 120
BstF5I	GGATG	2 cut(s)	50, 192
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	126, 138, 237, 367
BstMBI	GATC	4 cut(s)	123, 135, 234, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 179
BstSCI	CCNGG	1 cut(s)	71
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	182, 191
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	123, 364
BstYI	RGATCY	2 cut(s)	123, 364
Bsu15I	ATCGAT	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	50, 192
Cac8I	GCNNGC	2 cut(s)	63, 241
Cfr10I	RCCGGY	2 cut(s)	239, 371
ClaI	ATCGAT	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	375, 380
CspAI	ACCGGT	1 cut(s)	371
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	7 cut(s)	5, 61, 93, 173, 182, 249, 299
CviKI_1	RGCY	7 cut(s)	5, 61, 93, 173, 182, 249, 299
CviQI	GTAC	2 cut(s)	375, 380
DdeI	CTNAG	3 cut(s)	38, 57, 120
DpnI	GATC	4 cut(s)	125, 137, 236, 366
DpnII	GATC	4 cut(s)	123, 135, 234, 364
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	258
FaeI	CATG	1 cut(s)	110
FaiI	YATR	6 cut(s)	108, 307, 309, 393, 404, 409
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	106
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	171, 180
FokI	GGATG	2 cut(s)	37, 179
Fsp4HI	GCNGC	2 cut(s)	171, 180
GluI	GCNGC	2 cut(s)	171, 180
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	72, 240, 372
Hin1II	CATG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	8, 20, 317
HpaII	CCGG	3 cut(s)	72, 240, 372
HphI	GGTGA	3 cut(s)	3, 95, 361
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	133, 164
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	3 cut(s)	79, 379, 400
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	170, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 179
HpyF3I	CTNAG	3 cut(s)	38, 57, 120
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	123, 135, 234, 364
LpnPI	CCDG	4 cut(s)	85, 132, 253, 385
Lsp1109I	GCAGC	2 cut(s)	182, 191
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	4 cut(s)	9, 101, 225, 358
MalI	GATC	4 cut(s)	125, 137, 236, 366
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	4 cut(s)	123, 135, 234, 364
MboII	GAAGA	5 cut(s)	106, 158, 161, 326, 351
MflI	RGATCY	2 cut(s)	123, 364
MluCI	AATT	2 cut(s)	267, 290
MlyI	GAGTC	3 cut(s)	17, 29, 326
MnlI	CCTC	5 cut(s)	25, 37, 105, 193, 279
MreI	CGCCGGCG	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	239
MspI	CCGG	3 cut(s)	72, 240, 372
MspR9I	CCNGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	176, 179
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	123, 135, 234, 364
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	4 cut(s)	9, 101, 225, 358
PdiI	GCCGGC	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	71
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	172, 181
PleI	GAGTC	3 cut(s)	16, 28, 325
PpsI	GAGTC	3 cut(s)	16, 28, 325
PsuI	RGATCY	2 cut(s)	123, 364
RsaI	GTAC	2 cut(s)	376, 381
RsaNI	GTAC	2 cut(s)	375, 380
SatI	GCNGC	2 cut(s)	171, 180
Sau3AI	GATC	4 cut(s)	123, 135, 234, 364
SchI	GAGTC	3 cut(s)	17, 29, 326
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	6 cut(s)	29, 175, 202, 301, 358, 385
SfaNI	GCATC	1 cut(s)	157
SgrAI	CRCCGGYG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	267, 290
SsiI	CCGC	3 cut(s)	30, 63, 243
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	3 cut(s)	79, 379, 400
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	132, 165, 312, 331
TasI	AATT	2 cut(s)	267, 290
TseFI	GTSAC	4 cut(s)	9, 101, 225, 358
TseI	GCWGC	2 cut(s)	170, 179
Tsp45I	GTSAC	4 cut(s)	9, 101, 225, 358
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	2 cut(s)	193, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.