Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Reverse (-)

6595574 .. 6599660

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G094900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGACCGAGTCACCATCCGAGTCACTCTCTGACTCGCCCTTCAACCGCAACATCGACGACAACAAGAACGATATCGTGCCCGAAATCCCAATTGAGATTGTGAGCGAGGAAGAGATGGCTCTGCTCGAAGCTGCTTTGGTCTCCGCCCGCGCTTCCTTCTCTGCAATCCCTGCAATTCGCTGCTCAACATTTTCGTTCCGCAGCAACGTCAGGTCTATTAAGTCGATCTCTGCTTTATCCAAGAGGAGGTTATCGGGTTGCTCCGAACCAGATATTGAGGATTCGGGTGGTTTGAAGAGTGCCCAGAAGAAGACTCGGATGGCTGACTCGTTTTTGCACAGGTTTAGGAAGAAGGGCTTGTCTGTAACTGATATTACTGCCACGGAATGGTGTGAAAAACAAATGGAGTTTGTTTTACTCGTTGGCAAGCGAAAAGTCAGCAAGGCTATGAAAAAAGGCAGTGCTCGCCATGCAAAACTTGAGGAAGAGGTTGTAAAAAAAGTTAAAGTTCGTATCGAATCAATAGAAGATAGATGGGCTCTGAAGCTTCTGAATTTTATAACTGGAGTAAATCAATTATTATCTGAAGGATTGACGCGTGAGCTGCCACTAATAGGTTTTGCAGAAGGGGTATGGATGGTGGGAGTGGTTGATGAGATTCGAATGCCTGTAACAGAAACCATCAGAAACCCATTATTAGTTGACACAAAGACTCGTGTGAAAGATACACTTCCTGCTGAACCACAACGAAGAAATGGAAGGCTTCAATTAATGTGCTACAAGTATATGTGGGACGATTTAGTTGCTGATAAATTCCCATCCAACAAGTTTTTTGATTTCTTTTCCTTAAATCCTCATCATATCTTATCTGATGAAATCAGAGAGATGACTGCTAACTCAGGGTTCCCTGCAGAGACCCTTGATGATGTAGTGAGATACTATAGAAACACATGTGGCATGCTCTCCCCTGCTCATGACCAGCTGTTATTGAGATATGAGTTTCAGAAAGATCATTCATTACTTGGTGAAGATGAGTTTGCATATGACTCTGATTGGGTCAAGAATCAAATTCAGGGTTGTCTTGAGTTCTGGCTAGGAGAGCGAGAAGCCAGTTACACTCCTGAGGAAGAGCGATGGAAATGCGGGTTCTGTCAATATTCTTCTGTCTGCCCTGCTAAAAATGGTAACCATAATGATCCACCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo5

Protein Analysis

403

Amino Acids

45.81

Weight (kDa)

5.82

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccII	CGCG	2 cut(s)	150, 598
AciI	CCGC	5 cut(s)	46, 144, 148, 199, 1143
AclWI	GGATC	1 cut(s)	1190
AcsI	RAATTY	3 cut(s)	553, 812, 1068
AcuI	CTGAAG	2 cut(s)	563, 606
AfiI	CCNNNNNNNGG	3 cut(s)	246, 387, 614
AflIII	ACRYGT	2 cut(s)	596, 950
AgsI	TTSAA	3 cut(s)	43, 295, 767
AluBI	AGCT	4 cut(s)	131, 547, 604, 982
AluI	AGCT	4 cut(s)	131, 547, 604, 982
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	145, 908
AlwI	GGATC	1 cut(s)	1190
ApeKI	GCWGC	4 cut(s)	131, 180, 201, 604
ApoI	RAATTY	3 cut(s)	553, 812, 1068
AseI	ATTAAT	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	3, 1037
AsuII	TTCGAA	1 cut(s)	661
AxyI	CCTNAGG	1 cut(s)	1122
BaeGI	GKGCMC	2 cut(s)	81, 304
BanII	GRGCYC	1 cut(s)	541
BauI	CACGAG	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	4 cut(s)	118, 167, 213, 591
BccI	CCATC	8 cut(s)	22, 109, 313, 528, 631, 689, 826, 1128
BcgI	CGANNNNNNTGC	4 cut(s)	785, 819, 1122, 1156
BcoDI	GTCTC	2 cut(s)	145, 908
BfaI	CTAG	1 cut(s)	1094
BfmI	CTRYAG	2 cut(s)	909, 940
BisI	GCNGC	4 cut(s)	132, 181, 202, 605
BlsI	GCNGC	4 cut(s)	133, 182, 203, 606
BmiI	GGNNCC	1 cut(s)	905
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	661
BpuEI	CTTGAG	2 cut(s)	500, 1103
BsaI	GGTCTC	2 cut(s)	145, 908
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 387, 614
Bse1I	ACTGG	2 cut(s)	568, 1110
Bse21I	CCTNAGG	1 cut(s)	1122
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	4 cut(s)	14, 324, 642, 818
BseLI	CCNNNNNNNGG	3 cut(s)	246, 387, 614
BseMII	CTCAG	2 cut(s)	912, 1113
BseNI	ACTGG	2 cut(s)	568, 1110
BseRI	GAGGAG	1 cut(s)	259
BseSI	GKGCMC	2 cut(s)	81, 304
BseXI	GCAGC	4 cut(s)	118, 167, 213, 591
Bsh1236I	CGCG	2 cut(s)	150, 598
BsiHKAI	GWGCWC	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	3 cut(s)	246, 387, 614
BsmAI	GTCTC	2 cut(s)	145, 908
BsmFI	GGGAC	1 cut(s)	806
BsmI	GAATGC	1 cut(s)	669
Bso31I	GGTCTC	2 cut(s)	145, 908
Bsp119I	TTCGAA	1 cut(s)	661
Bsp1286I	GDGCHC	4 cut(s)	81, 304, 466, 541
Bsp143I	GATC	3 cut(s)	225, 1009, 1195
BspACI	CCGC	5 cut(s)	46, 144, 148, 199, 1143
BspCNI	CTCAG	2 cut(s)	911, 1114
BspFNI	CGCG	2 cut(s)	150, 598
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	1 cut(s)	905
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	1 cut(s)	1190
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	1 cut(s)	661
BspTNI	GGTCTC	2 cut(s)	145, 908
BsrI	ACTGG	2 cut(s)	568, 1110
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	225, 1009, 1195
BssSI	CACGAG	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	714
Bst6I	CTCTTC	4 cut(s)	105, 290, 480, 1122
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	4 cut(s)	148, 428, 466, 959
BstDEI	CTNAG	2 cut(s)	898, 1122
BstDSI	CCRYGG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	1184
BstF5I	GGATG	4 cut(s)	14, 324, 642, 818
BstFNI	CGCG	2 cut(s)	150, 598
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	228, 1012, 1198
BstMAI	GTCTC	2 cut(s)	145, 908
BstMBI	GATC	3 cut(s)	225, 1009, 1195
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 465, 470, 604, 1099
BstNSI	RCATGY	2 cut(s)	954, 961
BstPI	GGTNACC	1 cut(s)	1184
BstSFI	CTRYAG	2 cut(s)	909, 940
BstSLI	GKGCMC	2 cut(s)	81, 304
BstUI	CGCG	2 cut(s)	150, 598
BstV1I	GCAGC	4 cut(s)	118, 167, 213, 591
BstV2I	GAAGAC	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	1122
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	1147
BtsCI	GGATG	4 cut(s)	14, 324, 642, 818
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	4 cut(s)	148, 428, 466, 959
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	152
CseI	GACGC	1 cut(s)	604
CviAII	CATG	4 cut(s)	470, 951, 958, 974
DdeI	CTNAG	2 cut(s)	898, 1122
DpnI	GATC	3 cut(s)	227, 1011, 1197
DpnII	GATC	3 cut(s)	225, 1009, 1195
Eam1104I	CTCTTC	4 cut(s)	105, 290, 480, 1122
EarI	CTCTTC	4 cut(s)	105, 290, 480, 1122
EciI	GGCGGA	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	541
Eco31I	GGTCTC	2 cut(s)	145, 908
Eco32I	GATATC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	563, 606
Eco81I	CCTNAGG	1 cut(s)	1122
Eco91I	GGTNACC	1 cut(s)	1184
EcoO65I	GGTNACC	1 cut(s)	1184
EcoRV	GATATC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	541
FaeI	CATG	4 cut(s)	473, 954, 961, 977
FalI	AAGNNNNNCTT	4 cut(s)	341, 373, 714, 746
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	4 cut(s)	469, 950, 957, 973
FauI	CCCGC	2 cut(s)	155, 1136
FauNDI	CATATG	1 cut(s)	1042
Fnu4HI	GCNGC	4 cut(s)	132, 181, 202, 605
FokI	GGATG	3 cut(s)	331, 649, 805
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	4 cut(s)	132, 181, 202, 605
FspBI	CTAG	1 cut(s)	1094
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	4 cut(s)	132, 181, 202, 605
GsuI	CTGGAG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	473, 954, 961, 977
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	545
HphI	GGTGA	2 cut(s)	3, 1037
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188III	TCNNGA	4 cut(s)	974, 1060, 1082, 1121
Hpy8I	GTNNAC	1 cut(s)	703
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	6 cut(s)	49, 166, 346, 581, 620, 753
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	7 cut(s)	164, 173, 337, 473, 623, 911, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 465, 470, 604, 1099
HpyF3I	CTNAG	2 cut(s)	898, 1122
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	473, 954, 961, 977
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	225, 1009, 1195
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	4 cut(s)	118, 167, 213, 591
MaeI	CTAG	1 cut(s)	1094
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	6 cut(s)	9, 21, 364, 670, 1112, 1184
MalI	GATC	3 cut(s)	227, 1011, 1197
MboI	GATC	3 cut(s)	225, 1009, 1195
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	4 cut(s)	81, 304, 466, 541
MluCI	AATT	7 cut(s)	90, 174, 553, 575, 767, 812, 1068
MluI	ACGCGT	1 cut(s)	596
MlyI	GAGTC	7 cut(s)	17, 26, 29, 307, 320, 706, 1040
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	8 cut(s)	100, 237, 240, 271, 475, 481, 864, 1117
MseI	TTAA	4 cut(s)	219, 504, 770, 848
MspA1I	CMGCKG	1 cut(s)	982
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	669
MvnI	CGCG	2 cut(s)	150, 598
MwoI	GCNNNNNNNGC	5 cut(s)	170, 465, 470, 604, 1099
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	3 cut(s)	225, 1009, 1195
NlaIII	CATG	4 cut(s)	473, 954, 961, 977
NlaIV	GGNNCC	1 cut(s)	905
NmuCI	GTSAC	2 cut(s)	9, 21
NspI	RCATGY	2 cut(s)	954, 961
NspV	TTCGAA	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	961
PagI	TCATGA	1 cut(s)	973
PciI	ACATGT	1 cut(s)	950
PciSI	GCTCTTC	1 cut(s)	1122
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	4 cut(s)	281, 518, 658, 1063
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	133, 182, 203, 606
PleI	GAGTC	7 cut(s)	16, 26, 28, 307, 320, 706, 1040
PpsI	GAGTC	7 cut(s)	16, 26, 28, 307, 320, 706, 1040
PscI	ACATGT	1 cut(s)	950
PshBI	ATTAAT	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	560
PspEI	GGTNACC	1 cut(s)	1184
PspN4I	GGNNCC	1 cut(s)	905
PstI	CTGCAG	1 cut(s)	913
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	982
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	4 cut(s)	219, 504, 770, 848
SatI	GCNGC	4 cut(s)	132, 181, 202, 605
Sau3AI	GATC	3 cut(s)	225, 1009, 1195
SchI	GAGTC	7 cut(s)	17, 26, 29, 307, 320, 706, 1040
SduI	GDGCHC	4 cut(s)	81, 304, 466, 541
SfcI	CTRYAG	2 cut(s)	909, 940
SfuI	TTCGAA	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	479, 1082
SmoI	CTYRAG	2 cut(s)	479, 1082
SphI	GCATGC	1 cut(s)	961
Sse9I	AATT	7 cut(s)	90, 174, 553, 575, 767, 812, 1068
SsiI	CCGC	5 cut(s)	46, 144, 148, 199, 1143
SspI	AATATT	1 cut(s)	1157
SspMI	CTAG	1 cut(s)	1094
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	5 cut(s)	54, 126, 224, 516, 661
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	7 cut(s)	90, 174, 553, 575, 767, 812, 1068
TfiI	GAWTC	4 cut(s)	281, 518, 658, 1063
Tru1I	TTAA	4 cut(s)	219, 504, 770, 848
Tru9I	TTAA	4 cut(s)	219, 504, 770, 848
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	9, 21
TseI	GCWGC	4 cut(s)	131, 180, 201, 604
Tsp45I	GTSAC	2 cut(s)	9, 21
TspDTI	ATGAA	3 cut(s)	464, 888, 1005
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	466
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	387
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	3 cut(s)	553, 812, 1068
XceI	RCATGY	2 cut(s)	954, 961
XspI	CTAG	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.