Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Forward (+)

68554883 .. 68573931

Gene Structure 19049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG395700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTGGTACGTTCTCCTGAATGGCAACAGAGTAATCAGTAAGGCTATGAAAACTGGTAGGGAGCGCCATGCAAAACTTGAAGAAGAGTTTGTAACAAAATCTAAAGTTGTTGTCAATTCAGACGAAGATAAATGGGCCCTGAGGTTTTTGAAGTTTATTACAGGCATAAATCAATTATATACTGAAGGATTGACTCGAGAGCTGCCTCTCGTAGGTTTTGCAGAAGGTATATGGATGGTGGGAGTGATTGATGAGGTTCAAATGCCTGCCACAGAAACCCAGAGAAATCCATTATTAGTTGACACAAAGACTCGTGTGAAAGATAAACTTCCTTCCGAACCACAACGAAGGAAGGGAAGGTTACAATTGATGTTCTACAAGTATTTGTGGGATAATCTAGAAGCATCTGGATTCCCCGCCGACCAATTCTTTGATCATTTTTCCTTAAATCCTGATTGTGACTTATCTGAAGAAATCAGGGAGGTCGTCCGAGCTAAATCAGGGTATCCAGCAAAGACCCTTGATGACGTGGTGAAATACTATAGAAAATCCTGGATCCTGCTACCCCGTGCTCATGACCAACTTTTATTGAGGTACATCCAGAACACTCGCGCAACCTCTGGAGAGGGTCTATATGAAGGCCTAGATTGGTTCTCCAACAACACTGCTAACAAGTTAGTTGCAGTGTGGCCTCATCAAGGGCTGATAGGTGCATTTGAGGTCAAGGAGCTTTTTCTGATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo5

Protein Analysis

248

Amino Acids

28.75

Weight (kDa)

7.78

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo5	PF09810	2 - 91	8.6e-22	Exonuclease V - a 5' deoxyribonuclease
Exo5	PF09810	92 - 165	2.8e-09	Exonuclease V - a 5' deoxyribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	612
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	550, 563
AcuI	CTGAAG	2 cut(s)	204, 489
AfaI	GTAC	2 cut(s)	8, 596
AfiI	CCNNNNNNNGG	2 cut(s)	212, 698
AgsI	TTSAA	3 cut(s)	80, 151, 260
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	551
AluBI	AGCT	3 cut(s)	202, 494, 730
AluI	AGCT	3 cut(s)	202, 494, 730
Alw21I	GWGCWC	1 cut(s)	574
AlwI	GGATC	2 cut(s)	550, 563
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	3 cut(s)	135, 640, 689
ApaI	GGGCCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AspLEI	GCGC	2 cut(s)	66, 614
AspS9I	GGNCC	2 cut(s)	135, 136
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	553
BciVI	GTATCC	1 cut(s)	516
BclI	TGATCA	1 cut(s)	433
BfaI	CTAG	2 cut(s)	398, 644
BfmI	CTRYAG	1 cut(s)	541
BfoI	RGCGCY	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	516
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	2 cut(s)	135, 136
BmiI	GGNNCC	2 cut(s)	137, 557
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 698
Bse1I	ACTGG	1 cut(s)	58
Bse21I	CCTNAGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	553
BseGI	GGATG	2 cut(s)	240, 597
BseLI	CCNNNNNNNGG	2 cut(s)	212, 698
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	58
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	3 cut(s)	137, 642, 691
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	212, 698
BsnI	GGCC	3 cut(s)	137, 642, 691
BsoBI	CYCGRG	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	139, 574
Bsp143I	GATC	2 cut(s)	433, 555
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	137, 642, 691
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	612
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	137, 557
BspPI	GGATC	2 cut(s)	550, 563
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	433, 555
BssSI	CACGAG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	140
BstENI	CCTNNNNNAGG	2 cut(s)	210, 696
BstF5I	GGATG	2 cut(s)	240, 597
BstFNI	CGCG	1 cut(s)	612
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 614
BstKTI	GATC	2 cut(s)	436, 558
BstMBI	GATC	2 cut(s)	433, 555
BstNI	CCWGG	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	516
BsuRI	GGCC	3 cut(s)	137, 642, 691
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	240, 597
BtsI	GCAGTG	2 cut(s)	663, 690
BtsIMutI	CAGTG	2 cut(s)	663, 690
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	2 cut(s)	66, 614
Cfr13I	GGNCC	2 cut(s)	135, 136
Csp6I	GTAC	2 cut(s)	7, 595
CviAII	CATG	2 cut(s)	68, 575
CviJI	RGCY	8 cut(s)	44, 137, 202, 494, 642, 691, 703, 730
CviKI_1	RGCY	8 cut(s)	44, 137, 202, 494, 642, 691, 703, 730
CviQI	GTAC	2 cut(s)	7, 595
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	435, 557
DpnII	GATC	2 cut(s)	433, 555
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	204, 489
Eco81I	CCTNAGG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	2 cut(s)	210, 696
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	551
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	2 cut(s)	71, 578
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	2 cut(s)	67, 574
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	247, 584
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	2 cut(s)	398, 644
GlaI	GCGC	2 cut(s)	65, 613
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	137, 642, 691
HhaI	GCGC	2 cut(s)	66, 614
Hin1II	CATG	2 cut(s)	71, 578
Hin6I	GCGC	2 cut(s)	64, 612
HinP1I	GCGC	2 cut(s)	64, 612
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	193, 310, 411
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	5 cut(s)	121, 337, 469, 491, 738
Hpy188III	TCNNGA	8 cut(s)	16, 197, 398, 408, 452, 575, 601, 621
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	7 cut(s)	179, 218, 342, 342, 346, 351, 632
HpyCH4IV	ACGT	2 cut(s)	9, 528
HpyCH4V	TGCA	4 cut(s)	71, 221, 683, 713
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	2 cut(s)	9, 528
Hsp92II	CATG	2 cut(s)	71, 578
HspAI	GCGC	2 cut(s)	64, 612
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	433, 555
LmnI	GCTCC	2 cut(s)	61, 727
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	2 cut(s)	398, 644
MaeII	ACGT	2 cut(s)	9, 528
MaeIII	GTNAC	3 cut(s)	91, 360, 458
MalI	GATC	2 cut(s)	435, 557
MboI	GATC	2 cut(s)	433, 555
MboII	GAAGA	4 cut(s)	92, 95, 137, 482
MfeI	CAATTG	1 cut(s)	365
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	139, 574
MluCI	AATT	4 cut(s)	115, 173, 365, 425
MlyI	GAGTC	2 cut(s)	187, 304
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	9 cut(s)	135, 216, 247, 475, 585, 619, 628, 702, 712
MseI	TTAA	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	553
MunI	CAATTG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	553
MvnI	CGCG	1 cut(s)	612
NdeII	GATC	2 cut(s)	433, 555
NlaIII	CATG	2 cut(s)	71, 578
NlaIV	GGNNCC	2 cut(s)	137, 557
NmuCI	GTSAC	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	411
PfoI	TCCNGGA	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	2 cut(s)	187, 304
PpsI	GAGTC	2 cut(s)	187, 304
Psp6I	CCWGG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	137, 557
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	135, 136
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	2 cut(s)	8, 596
RsaNI	GTAC	2 cut(s)	7, 595
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	433, 555
Sau96I	GGNCC	2 cut(s)	135, 136
SchI	GAGTC	2 cut(s)	187, 304
ScrFI	CCNGG	1 cut(s)	553
SduI	GDGCHC	2 cut(s)	139, 574
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	115, 173, 365, 425
SseBI	AGGCCT	1 cut(s)	642
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	398, 644
StuI	AGGCCT	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	551
TaiI	ACGT	2 cut(s)	12, 531
TaqI	TCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	115, 173, 365, 425
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	670, 690
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	62, 651
TspRI	CASTG	2 cut(s)	670, 690
XagI	CCTNNNNNAGG	2 cut(s)	210, 696
XbaI	TCTAGA	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	195
XspI	CTAG	2 cut(s)	398, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.