Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Reverse (-)

11806635 .. 11807936

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1130000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTGGGTGTGATTGATGAGATTCGACTGTCTGTAACGGAAACCAACAGAAACCCAATATTAGTTGACACAAAGACTCGTGTGAAAGATACACTTCCTCATGAATCACAACAAAGAAATGGAAGGGTTCAGTTGATGTGCTACAAATGTATTTGGGATGCTTTAGCTGCCAATAAATTCCCATCGGAGAAGTTTTATGATTTCTTTTCCTTGAAACCTCATTACGTTTTACCTAAGACAATCAGAGCGAGGACTGTTAAGTCAGGGTTCCCAGCGGTGACCCTTGATGACATAGTGAGACACTATGGGAACATGTGCAGCAACCTGCGACCTGCTCATGACCAGCTGCTATTGAGATATGAGTTACAGAGAGATCATTCATTACTTGGTGAAGATGAGTTTGCATATGACTCTGATTGGATCAAAAGTCAAATTCAGTGTAGACTCGAGTTCTTGCGAGGAGAGCGTGAAGCCAGATGCACTCCTAAGGAAGAGCGATGGAAATGCCTGTCCTGTCAACATTCCAATGACTGCCAAGATAAAAAAGCAGACTATAATAGTCCACCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo5

Protein Analysis

191

Amino Acids

22.23

Weight (kDa)

8.09

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo5	PF09810	14 - 83	1.3e-07	Exonuclease V - a 5' deoxyribonuclease
Exo5	PF09810	112 - 179	1.6e-09	Exonuclease V - a 5' deoxyribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	333, 340
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	176, 432
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	2 cut(s)	167, 346
AluI	AGCT	2 cut(s)	167, 346
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	167, 318, 346
ApoI	RAATTY	2 cut(s)	176, 432
AsuHPI	GGTGA	2 cut(s)	289, 401
AvaI	CYCGRG	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	486
BauI	CACGAG	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	154, 330, 333
BccI	CCATC	2 cut(s)	190, 492
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BcoDI	GTCTC	1 cut(s)	292
BfuAI	ACCTGC	2 cut(s)	333, 340
BisI	GCNGC	3 cut(s)	168, 319, 347
BlsI	GCNGC	3 cut(s)	169, 320, 348
BmeT110I	CYCGRG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	2 cut(s)	148, 467
Bse21I	CCTNAGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	154, 330, 333
BseYI	CCCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	373, 420
BspACI	CCGC	1 cut(s)	275
BspHI	TCATGA	2 cut(s)	100, 337
BspLI	GGNNCC	1 cut(s)	269
BspMI	ACCTGC	2 cut(s)	333, 340
BspPI	GGATC	1 cut(s)	428
BspQI	GCTCTTC	1 cut(s)	486
BssMI	GATC	2 cut(s)	373, 420
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	30, 256
Bst6I	CTCTTC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	234, 486
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	376, 423
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	373, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 463
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	154, 330, 333
Bsu36I	CCTNAGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	443
BveI	ACCTGC	2 cut(s)	333, 340
CciI	TCATGA	2 cut(s)	100, 337
CviAII	CATG	3 cut(s)	101, 313, 338
CviJI	RGCY	3 cut(s)	167, 346, 473
CviKI_1	RGCY	3 cut(s)	167, 346, 473
DdeI	CTNAG	2 cut(s)	234, 486
DpnI	GATC	2 cut(s)	375, 422
DpnII	GATC	2 cut(s)	373, 420
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	446
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
FaeI	CATG	3 cut(s)	104, 316, 341
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	3 cut(s)	100, 312, 337
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	168, 319, 347
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	168, 319, 347
GluI	GCNGC	3 cut(s)	168, 319, 347
GsaI	CCCAGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	104, 316, 341
HincII	GTYRAC	2 cut(s)	67, 518
HindII	GTYRAC	2 cut(s)	67, 518
HinfI	GANTC	5 cut(s)	22, 76, 104, 410, 444
HphI	GGTGA	2 cut(s)	289, 401
Hpy166II	GTNNAC	4 cut(s)	67, 443, 518, 563
Hpy188I	TCNGA	3 cut(s)	187, 245, 415
Hpy188III	TCNNGA	2 cut(s)	101, 338
Hpy8I	GTNNAC	4 cut(s)	67, 443, 518, 563
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	2 cut(s)	30, 256
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	318, 404, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 463
HpyF3I	CTNAG	2 cut(s)	234, 486
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	104, 316, 341
Kzo9I	GATC	2 cut(s)	373, 420
LguI	GCTCTTC	1 cut(s)	486
LpnPI	CCDG	8 cut(s)	249, 285, 338, 345, 356, 487, 521, 526
Lsp1109I	GCAGC	3 cut(s)	154, 330, 333
LweI	GCATC	2 cut(s)	148, 467
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	34, 277, 363
MalI	GATC	2 cut(s)	375, 422
MboI	GATC	2 cut(s)	373, 420
MboII	GAAGA	2 cut(s)	404, 503
MluCI	AATT	2 cut(s)	176, 432
MlyI	GAGTC	3 cut(s)	70, 404, 438
MnlI	CCTC	4 cut(s)	108, 228, 243, 452
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	275, 346
MwoI	GCNNNNNNNGC	2 cut(s)	167, 463
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	2 cut(s)	373, 420
NlaIII	CATG	3 cut(s)	104, 316, 341
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	2 cut(s)	100, 337
PciI	ACATGT	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	22, 104
PkrI	GCNGC	3 cut(s)	169, 320, 348
PleI	GAGTC	3 cut(s)	70, 404, 438
PpsI	GAGTC	3 cut(s)	70, 404, 438
PscI	ACATGT	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	168, 319, 347
Sau3AI	GATC	2 cut(s)	373, 420
SchI	GAGTC	3 cut(s)	70, 404, 438
SetI	ASST	7 cut(s)	169, 220, 228, 235, 327, 334, 348
SfaNI	GCATC	2 cut(s)	148, 467
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	176, 432
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	30, 256
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	25, 447
TasI	AATT	2 cut(s)	176, 432
TfiI	GAWTC	2 cut(s)	22, 104
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	167, 318, 346
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	117, 369
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	443
XapI	RAATTY	2 cut(s)	176, 432
XceI	RCATGY	1 cut(s)	316
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.