Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Reverse (-)

40123224 .. 40134775

Gene Structure 11552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0331300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCAAAGATTGCATCAAGATCAAGGATTCGAGAACGCGTGCTGCAACCCACGGTGTCCTCCTCTCTACTGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGACTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTTTTAGTTACTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTGGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCATTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

122

Amino Acids

14.05

Weight (kDa)

9.76

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AflIII	ACRYGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	215
AluBI	AGCT	2 cut(s)	142, 317
AluI	AGCT	2 cut(s)	142, 317
ApeKI	GCWGC	2 cut(s)	43, 268
AsuNHI	GCTAGC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	30, 280
BccI	CCATC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	2 cut(s)	44, 269
BlsI	GCNGC	2 cut(s)	45, 270
BmgBI	CACGTC	1 cut(s)	215
BmsI	GCATC	3 cut(s)	23, 109, 255
BmtI	GCTAGC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	2 cut(s)	243, 315
BsaJI	CCNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	30, 280
Bsh1236I	CGCG	1 cut(s)	39
BsmI	GAATGC	2 cut(s)	225, 359
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	41, 75
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	30, 280
BstV2I	GAAGAC	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	41, 75
CviAII	CATG	2 cut(s)	131, 300
CviJI	RGCY	2 cut(s)	142, 317
CviKI_1	RGCY	2 cut(s)	142, 317
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	166
FaeI	CATG	2 cut(s)	134, 303
FaiI	YATR	5 cut(s)	79, 105, 132, 301, 348
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	2 cut(s)	130, 299
Fnu4HI	GCNGC	2 cut(s)	44, 269
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	44, 269
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	44, 269
GsuI	CTGGAG	2 cut(s)	243, 315
Hin1II	CATG	2 cut(s)	134, 303
HinfI	GANTC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	139, 227
Hpy188III	TCNNGA	5 cut(s)	18, 32, 176, 260, 294
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	14, 46, 268
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	134, 303
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	5 cut(s)	99, 273, 279, 337, 341
Lsp1109I	GCAGC	2 cut(s)	30, 280
LweI	GCATC	3 cut(s)	23, 109, 255
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	251, 277
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	168, 222
MhlI	GDGCHC	1 cut(s)	331
MluI	ACGCGT	1 cut(s)	37
MnlI	CCTC	2 cut(s)	70, 73
MseI	TTAA	1 cut(s)	234
MssI	GTTTAAAC	1 cut(s)	235
Mva1269I	GAATGC	2 cut(s)	225, 359
MvnI	CGCG	1 cut(s)	39
NdeII	GATC	1 cut(s)	20
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	134, 303
PctI	GAATGC	2 cut(s)	225, 359
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	45, 270
PmeI	GTTTAAAC	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	44, 269
Sau3AI	GATC	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	4 cut(s)	144, 217, 247, 319
SfaNI	GCATC	3 cut(s)	23, 109, 255
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	2 cut(s)	43, 268
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	185
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.