Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020761.1

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Reverse (-)

1231 .. 2766

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020761.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggtgggagtgattgatgaggttcaaatgcctgccacagaaacccagagaaatccattattagttgacacaaagactcgtgtgaaagataaacttccttccgaaccacaacgaaggaagggaaggtttcaattgatgttctacaagtatttgtgggataatctagaagcatctggattccccgcggaccaattctttgatcatttttccttaaatcctgattgtgacttatctgaagaaatcagggaggtcgtccgagctaaatcaggatggccttcctcatgctttgaggtcatagccttgtcaccagaagatgacttattcttactacccataggtcttcctctcttcttcttcatgctaccagaactggactctacctgcaagaccggatccaaaccaagctttttagaatccaaaatgaggtttctcttacccacagccaaactcagtttcagcttcttaggggatatggtcaagccatcttcacgtccacgacgtttgccaatgaggcgctctggagttccggcattttctggaggtcacacactcatcacctgtctcttttgcttcggaaacaaggcactcaaagagggctcgccacctggaccaggcattggagtccgaaacaccaaagatgggcacggggtagaaaccctagccctcataccagtgatagcccgccaatgcttgcggtgccagaagatgatgcccctacactcccctacattggcatgccacccccatttgcctccgaagcccaaccctgggatcccaacacagtccgctcagcaacatcatcatcctcatccaaatccggccccgagcacggcagtccaacgtgctttacaaggccacaagtggaacatcgcccaaacagcttatcataccggaacttgcaccgaaactcaacttcatcctccactagataccatagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo5

Protein Analysis

313

Amino Acids

34.8

Weight (kDa)

8.85

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	696
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	788
AccII	CGCG	1 cut(s)	185
AciI	CCGC	5 cut(s)	183, 185, 682, 694, 786
AclWI	GGATC	4 cut(s)	387, 400, 766, 779
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	8 cut(s)	423, 611, 617, 639, 730, 767, 768, 829
AgsI	TTSAA	2 cut(s)	26, 131
AjiI	CACGTC	1 cut(s)	491
AjnI	CCWGG	3 cut(s)	604, 610, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	5 cut(s)	260, 405, 459, 881, 938
AluI	AGCT	5 cut(s)	260, 405, 459, 881, 938
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	4 cut(s)	387, 400, 766, 779
Ama87I	CYCGRG	1 cut(s)	823
AoxI	GGCC	3 cut(s)	272, 819, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	187, 608, 820
AsuHPI	GGTGA	2 cut(s)	297, 547
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	187, 608
BaeGI	GKGCMC	1 cut(s)	645
BamHI	GGATCC	2 cut(s)	392, 771
BanI	GGYRCC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	599
BauI	CACGAG	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	830
BccI	CCATC	3 cut(s)	264, 490, 632
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	3 cut(s)	606, 612, 768
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	3 cut(s)	164, 659, 926
BfoI	RGCGCY	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	511
BlpI	GCTNAGC	1 cut(s)	789
Bme1390I	CCNGG	3 cut(s)	606, 612, 768
Bme18I	GGWCC	2 cut(s)	187, 608
BmeT110I	CYCGRG	1 cut(s)	823
BmgBI	CACGTC	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	187, 608, 820
BmiI	GGNNCC	4 cut(s)	394, 698, 773, 822
BmrFI	CCNGG	3 cut(s)	606, 612, 768
BmsI	GCATC	2 cut(s)	179, 699
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	2 cut(s)	540, 558
Bpu1102I	GCTNAGC	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	183, 766, 767
BsaWI	WCCGGW	2 cut(s)	389, 890
Bsc4I	CCNNNNNNNGG	8 cut(s)	423, 611, 617, 639, 730, 767, 768, 829
Bse1I	ACTGG	2 cut(s)	375, 671
BseBI	CCWGG	3 cut(s)	606, 612, 768
BseDI	CCNNGG	3 cut(s)	183, 766, 767
BseGI	GGATG	4 cut(s)	275, 802, 808, 916
BseLI	CCNNNNNNNGG	8 cut(s)	423, 611, 617, 639, 730, 767, 768, 829
BseMII	CTCAG	2 cut(s)	463, 803
BseNI	ACTGG	2 cut(s)	375, 671
BseSI	GKGCMC	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	274, 821, 855
BshNI	GGYRCC	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	4 cut(s)	390, 527, 818, 891
BslI	CCNNNNNNNGG	8 cut(s)	423, 611, 617, 639, 730, 767, 768, 829
BsmAI	GTCTC	1 cut(s)	566
BsnI	GGCC	3 cut(s)	274, 821, 855
BsoBI	CYCGRG	1 cut(s)	823
Bsp1286I	GDGCHC	3 cut(s)	599, 645, 830
Bsp143I	GATC	3 cut(s)	199, 392, 771
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	5 cut(s)	183, 185, 682, 694, 786
BspANI	GGCC	3 cut(s)	274, 821, 855
BspCNI	CTCAG	2 cut(s)	462, 802
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	4 cut(s)	394, 698, 773, 822
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	4 cut(s)	387, 400, 766, 779
BspT107I	GGYRCC	1 cut(s)	696
BsrBI	CCGCTC	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	375, 671
BssECI	CCNNGG	3 cut(s)	183, 766, 767
BssMI	GATC	3 cut(s)	199, 392, 771
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	606, 612, 768
Bst4CI	ACNGT	1 cut(s)	783
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	5 cut(s)	33, 599, 682, 692, 736
BstDEI	CTNAG	3 cut(s)	449, 463, 789
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	4 cut(s)	275, 802, 808, 916
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	3 cut(s)	202, 395, 774
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	3 cut(s)	199, 392, 771
BstMWI	GCNNNNNNNGC	4 cut(s)	511, 696, 757, 878
BstNI	CCWGG	3 cut(s)	606, 612, 768
BstNSI	RCATGY	1 cut(s)	738
BstSCI	CCNGG	3 cut(s)	604, 610, 766
BstSLI	GKGCMC	1 cut(s)	645
BstUI	CGCG	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	392, 771
BstYI	RGATCY	2 cut(s)	392, 771
BsuRI	GGCC	3 cut(s)	274, 821, 855
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	853
BtrI	CACGTC	1 cut(s)	491
BtsCI	GGATG	4 cut(s)	275, 802, 808, 916
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	5 cut(s)	33, 599, 682, 692, 736
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	3 cut(s)	187, 608, 820
Cfr42I	CCGCGG	1 cut(s)	186
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	3 cut(s)	282, 358, 735
DdeI	CTNAG	3 cut(s)	449, 463, 789
DpnI	GATC	3 cut(s)	201, 394, 773
DpnII	GATC	3 cut(s)	199, 392, 771
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	599
Eco47I	GGWCC	2 cut(s)	187, 608
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	823
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	604, 610, 766
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	3 cut(s)	285, 361, 738
FaiI	YATR	9 cut(s)	283, 296, 335, 359, 473, 668, 736, 888, 935
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	3 cut(s)	281, 357, 734
FauI	CCCGC	2 cut(s)	190, 689
FbaI	TGATCA	1 cut(s)	199
FokI	GGATG	4 cut(s)	282, 789, 795, 903
FriOI	GRGCYC	1 cut(s)	599
FspBI	CTAG	3 cut(s)	164, 659, 926
GlaI	GCGC	1 cut(s)	515
GsuI	CTGGAG	2 cut(s)	540, 558
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	274, 821, 855
HapII	CCGG	4 cut(s)	390, 527, 818, 891
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	285, 361, 738
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	5 cut(s)	76, 177, 374, 413, 621
HpaII	CCGG	4 cut(s)	390, 527, 818, 891
HphI	GGTGA	2 cut(s)	297, 547
Hpy166II	GTNNAC	2 cut(s)	67, 494
Hpy188I	TCNGA	6 cut(s)	103, 235, 257, 575, 626, 756
Hpy188III	TCNNGA	6 cut(s)	164, 174, 218, 267, 519, 537
Hpy8I	GTNNAC	2 cut(s)	67, 494
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	5 cut(s)	108, 108, 112, 117, 285
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4IV	ACGT	3 cut(s)	490, 499, 841
HpyCH4V	TGCA	2 cut(s)	384, 900
HpyF10VI	GCNNNNNNNGC	4 cut(s)	511, 696, 757, 878
HpyF3I	CTNAG	3 cut(s)	449, 463, 789
HpySE526I	ACGT	3 cut(s)	490, 499, 841
Hsp92II	CATG	3 cut(s)	285, 361, 738
HspAI	GCGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	199
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	199, 392, 771
LweI	GCATC	2 cut(s)	179, 699
MaeI	CTAG	3 cut(s)	164, 659, 926
MaeII	ACGT	3 cut(s)	490, 499, 841
MaeIII	GTNAC	3 cut(s)	224, 303, 542
MalI	GATC	3 cut(s)	201, 394, 773
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	3 cut(s)	199, 392, 771
MboII	GAAGA	8 cut(s)	248, 323, 332, 340, 343, 346, 477, 715
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	392, 771
MhlI	GDGCHC	3 cut(s)	599, 645, 830
MluCI	AATT	2 cut(s)	131, 191
MlyI	GAGTC	3 cut(s)	70, 368, 630
MmeI	TCCRAC	1 cut(s)	862
MseI	TTAA	2 cut(s)	212, 940
MslI	CAYNNNNRTG	2 cut(s)	671, 733
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	4 cut(s)	390, 527, 818, 891
MspR9I	CCNGG	3 cut(s)	606, 612, 768
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	3 cut(s)	606, 612, 768
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	511, 696, 757, 878
NdeII	GATC	3 cut(s)	199, 392, 771
NlaIII	CATG	3 cut(s)	285, 361, 738
NlaIV	GGNNCC	4 cut(s)	394, 698, 773, 822
NmuCI	GTSAC	3 cut(s)	224, 303, 542
NspI	RCATGY	1 cut(s)	738
PaeI	GCATGC	1 cut(s)	738
PasI	CCCWGGG	1 cut(s)	767
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	177, 413
PflMI	CCANNNNNTGG	1 cut(s)	617
PleI	GAGTC	3 cut(s)	70, 368, 629
PpsI	GAGTC	3 cut(s)	70, 368, 629
Psp6I	CCWGG	3 cut(s)	604, 610, 766
PspGI	CCWGG	3 cut(s)	604, 610, 766
PspN4I	GGNNCC	4 cut(s)	394, 698, 773, 822
PspPI	GGNCC	3 cut(s)	187, 608, 820
PsuI	RGATCY	2 cut(s)	392, 771
RseI	CAYNNNNRTG	2 cut(s)	671, 733
SacII	CCGCGG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	212, 940
Sau3AI	GATC	3 cut(s)	199, 392, 771
Sau96I	GGNCC	3 cut(s)	187, 608, 820
SchI	GAGTC	3 cut(s)	70, 368, 630
ScrFI	CCNGG	3 cut(s)	606, 612, 768
SduI	GDGCHC	3 cut(s)	599, 645, 830
SfaNI	GCATC	2 cut(s)	179, 699
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	187, 608
SmiMI	CAYNNNNRTG	2 cut(s)	671, 733
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	2 cut(s)	131, 191
SsiI	CCGC	5 cut(s)	183, 185, 682, 694, 786
SspMI	CTAG	3 cut(s)	164, 659, 926
StyD4I	CCNGG	3 cut(s)	604, 610, 766
TaaI	ACNGT	1 cut(s)	783
TaiI	ACGT	3 cut(s)	493, 502, 844
TasI	AATT	2 cut(s)	131, 191
TfiI	GAWTC	2 cut(s)	177, 413
Tru1I	TTAA	2 cut(s)	212, 940
Tru9I	TTAA	2 cut(s)	212, 940
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	3 cut(s)	224, 303, 542
Tsp45I	GTSAC	3 cut(s)	224, 303, 542
TspDTI	ATGAA	2 cut(s)	346, 905
TspRI	CASTG	1 cut(s)	678
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	187, 608
XagI	CCTNNNNNAGG	1 cut(s)	609
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	738
XspI	CTAG	3 cut(s)	164, 659, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.