Rmu_sc0007864.1_g000009

exonuclease V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007864.1
OG0002756
Physical Location & Seq
Forward (+)
41460 .. 44322
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007864.1_g000009.1.cds

Sequence Viewer

Length: 723 bp
atgacacagtcgccttccgactcacgactcttggatcctcatcatccttatcctcatcttgtgccccaaatcccaattgagattgtgagcgacgaagagatggccttgctcttcgctcgctctctaatcccttccacagtgagagcattcccttccagcgtcaggtctcttcagtactccatcaccctcctttccaagaggagcctttcgggttgctcccaacccggtatagaggattcgggcgggttcaacactactagccagaagaagaaggctgaatcgcttttgcaccgcttcaggaacaagaagggcttatccgcctccgattttgctgaatcggtatgggaatttctaggctttgggactcttcgtttagtcttttggggaactgggtttgattgttttgcagaaggtatatggatggtgggagtgattgatgaggttcaaatgcctgccacagaaacccagagaaatccattattagttgacacaaagactcgtgtgaaagataaacttccttccgaaccacaacgaaggaagggaaggtttcaattgatgttctacaagtatttgtgggataatctagaagcatctggattccccgcggaccaattctttgatcatttttccttaaatcctgattgtgacttatctgaagaaatcagggaggtcgtccgagctaaatcagggtatccaacaaaggtaaagatactttccacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo5

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

6.97

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 605
AciI CCGC 5 cut(s) 243, 292, 318, 603, 605
AclWI GGATC 2 cut(s) 29, 42
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 3 cut(s) 155, 280, 675
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 3 cut(s) 250, 446, 551
AluBI AGCT 1 cut(s) 680
AluI AGCT 1 cut(s) 680
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 2 cut(s) 29, 42
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AspS9I GGNCC 1 cut(s) 607
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 66
BamHI GGATCC 1 cut(s) 34
BauI CACGAG 1 cut(s) 498
BccI CCATC 3 cut(s) 94, 188, 415
BciVI GTATCC 1 cut(s) 702
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 3 cut(s) 258, 353, 584
BfuI GTATCC 1 cut(s) 702
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 2 cut(s) 36, 203
BmrFI CCNGG 1 cut(s) 225
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 599
BmuI ACTGGG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 603
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 2 cut(s) 43, 426
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 34, 619
BspACI CCGC 5 cut(s) 243, 292, 318, 603, 605
BspANI GGCC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 2 cut(s) 36, 203
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 2 cut(s) 34, 619
BssSI CACGAG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 9, 139
Bst6I CTCTTC 4 cut(s) 90, 116, 174, 372
BstC8I GCNNGC 2 cut(s) 118, 453
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 2 cut(s) 43, 426
BstFNI CGCG 1 cut(s) 605
BstKTI GATC 2 cut(s) 37, 622
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 34, 619
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 66
BstUI CGCG 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 1 cut(s) 702
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 2 cut(s) 43, 426
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 118, 453
Cfr13I GGNCC 1 cut(s) 607
Cfr42I CCGCGG 1 cut(s) 606
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 7 cut(s) 104, 204, 261, 275, 312, 357, 680
CviKI_1 RGCY 7 cut(s) 104, 204, 261, 275, 312, 357, 680
CviQI GTAC 1 cut(s) 175
DpnI GATC 2 cut(s) 36, 621
DpnII GATC 2 cut(s) 34, 619
Eam1104I CTCTTC 4 cut(s) 90, 116, 174, 372
EarI CTCTTC 4 cut(s) 90, 116, 174, 372
EciI GGCGGA 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 607
Eco57I CTGAAG 3 cut(s) 155, 280, 675
FaiI YATR 4 cut(s) 230, 343, 416, 418
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 498, 530
FaqI GGGAC 1 cut(s) 376
FauI CCCGC 2 cut(s) 236, 610
FbaI TGATCA 1 cut(s) 619
FokI GGATG 2 cut(s) 30, 433
FspBI CTAG 3 cut(s) 258, 353, 584
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 8 cut(s) 20, 27, 236, 278, 335, 364, 496, 597
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 5 cut(s) 19, 325, 523, 655, 677
Hpy188III TCNNGA 5 cut(s) 24, 298, 584, 594, 638
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 9, 139
HpyCH4V TGCA 2 cut(s) 289, 407
Ksp22I TGATCA 1 cut(s) 619
KspI CCGCGG 1 cut(s) 606
Kzo9I GATC 2 cut(s) 34, 619
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 201, 221
LweI GCATC 1 cut(s) 599
MaeI CTAG 3 cut(s) 258, 353, 584
MaeIII GTNAC 1 cut(s) 644
MalI GATC 2 cut(s) 36, 621
MboI GATC 2 cut(s) 34, 619
MboII GAAGA 7 cut(s) 103, 107, 161, 277, 280, 359, 668
MfeI CAATTG 2 cut(s) 75, 551
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 4 cut(s) 75, 347, 551, 611
MlyI GAGTC 4 cut(s) 14, 21, 358, 490
MmeI TCCRAC 2 cut(s) 42, 719
MnlI CCTC 8 cut(s) 48, 63, 192, 197, 226, 331, 433, 661
MseI TTAA 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 2 cut(s) 75, 551
Mva1269I GAATGC 1 cut(s) 146
MvnI CGCG 1 cut(s) 605
NciI CCSGG 1 cut(s) 225
NdeII GATC 2 cut(s) 34, 619
NlaIV GGNNCC 2 cut(s) 36, 203
NmuCI GTSAC 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 4 cut(s) 236, 278, 335, 597
PflFI GACNNNGTC 1 cut(s) 7
PleI GAGTC 4 cut(s) 14, 21, 358, 490
PpsI GAGTC 4 cut(s) 14, 21, 358, 490
PspN4I GGNNCC 2 cut(s) 36, 203
PspPI GGNCC 1 cut(s) 607
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacII CCGCGG 1 cut(s) 606
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 632
Sau3AI GATC 2 cut(s) 34, 619
Sau96I GGNCC 1 cut(s) 607
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 4 cut(s) 14, 21, 358, 490
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 66
SetI ASST 7 cut(s) 167, 415, 444, 548, 672, 682, 705
SfaNI GCATC 1 cut(s) 599
Sfr303I CCGCGG 1 cut(s) 606
SgrBI CCGCGG 1 cut(s) 606
SinI GGWCC 1 cut(s) 607
Sse9I AATT 4 cut(s) 75, 347, 551, 611
SsiI CCGC 5 cut(s) 243, 292, 318, 603, 605
SspMI CTAG 3 cut(s) 258, 353, 584
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 9, 139
TasI AATT 4 cut(s) 75, 347, 551, 611
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 4 cut(s) 236, 278, 335, 597
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 644
TspRI CASTG 1 cut(s) 144
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 607
XapI RAATTY 1 cut(s) 347
XbaI TCTAGA 1 cut(s) 583
XspI CTAG 3 cut(s) 258, 353, 584
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.