Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007864.1

Orthogroup ID

OG0002756

Physical Location & Seq

Genomic Coordinates Forward (+)

36107 .. 39835

Gene Structure 3729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007864.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgagccagtcgccttccgactcactcctcgatcatcatcctcgtcctcatcttgtgcccgaaatcccaattgagatcgtaagcgacgaagagatggctctgctcgaagccgcgttgctctccgctcgctctctaatcccttccacagtgagagcattcccttcatttcgatcctctcacttcccttccaatgccaggtctattcagtccatcaccctcgtttccaacaagaggttttcgggttgctccgaacccgatattgaggattcgggtttagggttcgacactagccagaagaagacccggttggctgagtcgtttttgcaccgcttcaggaggaagaagggcttgtgcgtcaccgattttacttccgcggaatggtgtgaaaaacagatggagtttgagctcctcggcggcaagaaaaaaattaataaggctatgaaagctggtagtaagcgccatgcaaaactcgaagaagaggttctaacaagagttaaagttgatatcaaatcagacgaagataaatttgctctgaagcttttgaattgtattaccggcataaatcaattacaatttgaaggattgactcgagagctgcctctcataggttttgtagaaggtgtatggatggtgggagtgattgatgaggttcaaatgcctgcaacagaaacccagagaaatccattattagttgacacaaagactcgtgtgaaagatacacttcctgctgaaccacaacgaaggaatggaaggcttcaattgatgtgctacaagtatatgtgggacaatttagttacttctgaattcccctccgaccaattctttgattatttttccttaaatcctgattgtgacttatctgaagaaatcagggaggtcacagctaaatcagggtgtccagcaaagacccttgatgacgtagtgagatactatagaaatacctggagcatgctaccccctgctcatgaccaacttttattgagatacgagttacaaaaagaccattctctaatcggcgaagataaatttgcatacgactctgattgggttgagaagcaaattcagttttctctcgagttctggttaggagagcgagaagccagttacactcctgaggaagagcgatggaaatgcaacttctgtcaatttgcttccacatgtcctgctaaaagtgtaacctccagcaacctgctgacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo5

Protein Analysis

399

Amino Acids

45.7

Weight (kDa)

5.56

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57110 AT5G60370 AT5G60370
fragaria_vesca	FvH4_3g33260
malus_domestica	MD02G1245500.v1.1 MD02G1279000.v1.1 MD03G1105200.v1.1 MD03G1203800.v1.1 MD11G1130000.v1.1 MD11G1130200.v1.1 MD12G1113200.v1.1
prunus_persica	Prupe.6G094900_v2.0.a1 Prupe.6G094900_v2.0.a1
pyrus_communis	pycom01g03200 pycom11g10780
rosa_chinensis	RchiOBHm_Chr5g0060611 RchiOBHm_Chr5g0060621
rosa_laevigata	RLG00000035375 RLG00000035376
rosa_multiflora	Rmu_sc0007864.1_g000008 Rmu_sc0007864.1_g000009 Rmu_sc0020761.1_g000003 Rmu_sc0020761.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020190 Rroxscaffold_1G00020200
rosa_rugosa	Rorug05G0331000 Rorug05G0331100 Rorug05G0331200 Rorug05G0331300
rosa_samantha	Rh5AG395600 Rh5AG395700 Rh5BG407900 Rh5BG408000 Rh5CG432400 Rh5CG432500 Rh5DG422800 Rh5DG422900
rosa_wichuraiana	Rw5G037220 Rw5G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	2 cut(s)	113, 374
AciI	CCGC	6 cut(s)	111, 123, 328, 372, 374, 414
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	4 cut(s)	524, 803, 1025, 1059
AcuI	CTGAAG	3 cut(s)	316, 554, 882
AfiI	CCNNNNNNNGG	4 cut(s)	195, 231, 378, 605
AflIII	ACRYGT	1 cut(s)	1157
AgsI	TTSAA	4 cut(s)	544, 578, 653, 758
AjnI	CCWGG	2 cut(s)	194, 941
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	5 cut(s)	406, 446, 538, 595, 884
AluI	AGCT	5 cut(s)	406, 446, 538, 595, 884
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	2 cut(s)	588, 1073
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	4 cut(s)	524, 803, 1025, 1059
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AseI	ATTAAT	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	205, 349
AvaI	CYCGRG	2 cut(s)	588, 1073
AxyI	CCTNAGG	1 cut(s)	1113
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	408
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	5 cut(s)	88, 218, 388, 622, 1119
BcgI	CGANNNNNNTGC	2 cut(s)	1113, 1147
BciT130I	CCWGG	2 cut(s)	196, 943
BcnI	CCSGG	1 cut(s)	304
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	931
BfoI	RGCGCY	1 cut(s)	460
BisI	GCNGC	3 cut(s)	111, 415, 596
BlsI	GCNGC	3 cut(s)	112, 416, 597
Bme1390I	CCNGG	3 cut(s)	196, 304, 943
BmeT110I	CYCGRG	2 cut(s)	588, 1073
BmrFI	CCNGG	3 cut(s)	196, 304, 943
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	964, 1165
BpuMI	CCSGG	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	372, 409
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 231, 378, 605
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	7, 1101
Bse21I	CCTNAGG	1 cut(s)	1113
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	196, 943
BseDI	CCNNGG	2 cut(s)	372, 409
BseGI	GGATG	2 cut(s)	37, 633
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	195, 231, 378, 605
BseMII	CTCAG	2 cut(s)	303, 1104
BseNI	ACTGG	2 cut(s)	7, 1101
BseRI	GAGGAG	2 cut(s)	17, 398
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	582
Bsh1236I	CGCG	2 cut(s)	113, 374
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	2 cut(s)	588, 1073
BsiSI	CCGG	2 cut(s)	304, 555
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	4 cut(s)	195, 231, 378, 605
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	588, 1073
Bsp1286I	GDGCHC	2 cut(s)	60, 408
Bsp143I	GATC	3 cut(s)	31, 75, 170
BspACI	CCGC	6 cut(s)	111, 123, 328, 372, 374, 414
BspCNI	CTCAG	2 cut(s)	304, 1105
BspFNI	CGCG	2 cut(s)	113, 374
BspHI	TCATGA	1 cut(s)	964
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	1113
BsrBI	CCGCTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	7, 1101
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	372, 409
BssMI	GATC	3 cut(s)	31, 75, 170
BssSI	CACGAG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	196, 943
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	3 cut(s)	84, 471, 1113
BstC8I	GCNNGC	3 cut(s)	127, 660, 950
BstDEI	CTNAG	3 cut(s)	312, 1113, 1197
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	37, 633
BstFNI	CGCG	2 cut(s)	113, 374
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	3 cut(s)	34, 78, 173
BstMBI	GATC	3 cut(s)	31, 75, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	2 cut(s)	196, 943
BstNSI	RCATGY	2 cut(s)	952, 1161
BstSCI	CCNGG	3 cut(s)	194, 302, 941
BstSFI	CTRYAG	1 cut(s)	931
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	2 cut(s)	113, 374
BstV1I	GCAGC	1 cut(s)	582
BstV2I	GAAGAC	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	1113
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	1138
BtsCI	GGATG	2 cut(s)	37, 633
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	127, 660, 950
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	554
Cfr42I	CCGCGG	1 cut(s)	375
CseI	GACGC	1 cut(s)	343
CviAII	CATG	4 cut(s)	461, 949, 965, 1158
DdeI	CTNAG	3 cut(s)	312, 1113, 1197
DpnI	GATC	3 cut(s)	33, 77, 172
DpnII	GATC	3 cut(s)	31, 75, 170
Eam1104I	CTCTTC	3 cut(s)	84, 471, 1113
EarI	CTCTTC	3 cut(s)	84, 471, 1113
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	3 cut(s)	316, 554, 882
Eco81I	CCTNAGG	1 cut(s)	1113
Eco88I	CYCGRG	2 cut(s)	588, 1073
EcoICRI	GAGCTC	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	194, 941
EcoRV	GATATC	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	4 cut(s)	464, 952, 968, 1161
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 705, 737
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	4 cut(s)	460, 948, 964, 1157
Fnu4HI	GCNGC	3 cut(s)	111, 415, 596
FokI	GGATG	2 cut(s)	24, 640
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	111, 415, 596
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	3 cut(s)	111, 415, 596
GsuI	CTGGAG	2 cut(s)	964, 1165
HaeII	RGCGCY	1 cut(s)	460
HapII	CCGG	2 cut(s)	304, 555
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	4 cut(s)	464, 952, 968, 1161
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	6 cut(s)	20, 266, 314, 586, 703, 1037
HpaII	CCGG	2 cut(s)	304, 555
HphI	GGTGA	2 cut(s)	205, 349
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	8 cut(s)	19, 250, 514, 534, 802, 814, 862, 1042
Hpy188III	TCNNGA	6 cut(s)	334, 590, 845, 965, 1073, 1112
Hpy8I	GTNNAC	1 cut(s)	694
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	9 cut(s)	24, 150, 171, 195, 337, 572, 611, 735, 744
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	5 cut(s)	325, 464, 662, 1031, 1134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	312, 1113, 1197
HpySE526I	ACGT	1 cut(s)	918
Hsp92II	CATG	4 cut(s)	464, 952, 968, 1161
HspAI	GCGC	1 cut(s)	457
KspI	CCGCGG	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	31, 75, 170
LguI	GCTCTTC	1 cut(s)	1113
LmnI	GCTCC	3 cut(s)	251, 411, 945
Lsp1109I	GCAGC	1 cut(s)	582
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	918
MaeIII	GTNAC	7 cut(s)	355, 793, 851, 877, 990, 1103, 1174
MalI	GATC	3 cut(s)	33, 77, 172
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	3 cut(s)	31, 75, 170
MfeI	CAATTG	2 cut(s)	69, 758
MhlI	GDGCHC	2 cut(s)	60, 408
MlyI	GAGTC	5 cut(s)	14, 323, 580, 697, 1031
MmeI	TCCRAC	3 cut(s)	42, 249, 837
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	3 cut(s)	429, 495, 839
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	2 cut(s)	304, 555
MspR9I	CCNGG	3 cut(s)	196, 304, 943
MunI	CAATTG	2 cut(s)	69, 758
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	2 cut(s)	196, 943
MvnI	CGCG	2 cut(s)	113, 374
MwoI	GCNNNNNNNGC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	31, 75, 170
NlaIII	CATG	4 cut(s)	464, 952, 968, 1161
NmeAIII	GCCGAG	1 cut(s)	390
NmuCI	GTSAC	3 cut(s)	355, 851, 877
NspI	RCATGY	2 cut(s)	952, 1161
PaeI	GCATGC	1 cut(s)	952
PaeR7I	CTCGAG	2 cut(s)	588, 1073
PagI	TCATGA	1 cut(s)	964
PciI	ACATGT	1 cut(s)	1157
PciSI	GCTCTTC	1 cut(s)	1113
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	112, 416, 597
PleI	GAGTC	5 cut(s)	14, 322, 580, 697, 1031
PpsI	GAGTC	5 cut(s)	14, 322, 580, 697, 1031
PscI	ACATGT	1 cut(s)	1157
PshBI	ATTAAT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	194, 941
PspGI	CCWGG	2 cut(s)	194, 941
SacI	GAGCTC	1 cut(s)	408
SacII	CCGCGG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	1113
SaqAI	TTAA	3 cut(s)	429, 495, 839
SatI	GCNGC	3 cut(s)	111, 415, 596
Sau3AI	GATC	3 cut(s)	31, 75, 170
SchI	GAGTC	5 cut(s)	14, 323, 580, 697, 1031
ScrFI	CCNGG	3 cut(s)	196, 304, 943
SduI	GDGCHC	2 cut(s)	60, 408
SfcI	CTRYAG	1 cut(s)	931
Sfr274I	CTCGAG	2 cut(s)	588, 1073
Sfr303I	CCGCGG	1 cut(s)	375
SgrBI	CCGCGG	1 cut(s)	375
SlaI	CTCGAG	2 cut(s)	588, 1073
SmlI	CTYRAG	2 cut(s)	588, 1073
SmoI	CTYRAG	2 cut(s)	588, 1073
SphI	GCATGC	1 cut(s)	952
SsiI	CCGC	6 cut(s)	111, 123, 328, 372, 374, 414
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	3 cut(s)	194, 302, 941
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	7 cut(s)	30, 105, 169, 282, 471, 589, 1074
TauI	GCSGC	2 cut(s)	113, 417
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	3 cut(s)	429, 495, 839
Tru9I	TTAA	3 cut(s)	429, 495, 839
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	3 cut(s)	355, 851, 877
TseI	GCWGC	1 cut(s)	595
Tsp45I	GTSAC	3 cut(s)	355, 851, 877
TspDTI	ATGAA	2 cut(s)	153, 455
TspRI	CASTG	1 cut(s)	153
VspI	ATTAAT	1 cut(s)	429
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	4 cut(s)	524, 803, 1025, 1059
XceI	RCATGY	2 cut(s)	952, 1161
XhoI	CTCGAG	2 cut(s)	588, 1073
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.