AT3G61620

3' exoribonuclease family, domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001974
Physical Location & Seq
Reverse (-)
22801215 .. 22804104
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61620.2

Sequence Viewer

Length: 726 bp
ATGGAGTACGTAAACCCTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAGTTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAATTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACCATGCAGTGGTGTTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGACAGAAATTCGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTTGCATATTAACCGAATTGATGCCTCACTCTCAGATCGATATTTTCCTTCAGGTTCTACAAGCTGATGGAGGAACAAGATCAGCTTGTATCAATGCCGCGACTCTAGCTCTAGCAGATGCTGGAATTCCAATGCGTGATCTCGCTGTTTCCTGTAGTGCTGGATATTTAAACAGTACTCCTCTTCTTGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACCGTCGGTATTCTACCTAAATTAGACAAAGTGTCACTCCTTCAGATGGATGCCAAGTTACCGATGGAAACATTTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGCAAGGCAATTGCAGAGAGAATACGCGAGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

241

Amino Acids

26.55

Weight (kDa)

5.4

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 18 - 148 1.9e-40 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 151 - 215 4.4e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AccII CGCG 2 cut(s) 413, 675
AciI CCGC 1 cut(s) 411
AcsI RAATTY 2 cut(s) 260, 438
AcuI CTGAAG 5 cut(s) 39, 93, 347, 569, 663
AfaI GTAC 4 cut(s) 8, 238, 490, 681
AfiI CCNNNNNNNGG 2 cut(s) 202, 589
AgsI TTSAA 4 cut(s) 49, 167, 518, 686
AhdI GACNNNNNGTC 1 cut(s) 574
Alw26I GTCTC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 140, 719
ApoI RAATTY 2 cut(s) 260, 438
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 152
BbsI GAAGAC 4 cut(s) 17, 103, 259, 525
BbvI GCAGC 2 cut(s) 152, 706
BccI CCATC 5 cut(s) 29, 112, 374, 583, 601
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 3 cut(s) 419, 425, 704
BfmI CTRYAG 1 cut(s) 466
BisI GCNGC 3 cut(s) 141, 411, 720
BlsI GCNGC 3 cut(s) 142, 412, 721
BmcAI AGTACT 2 cut(s) 238, 490
Bme18I GGWCC 1 cut(s) 152
BmeRI GACNNNNNGTC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 3 cut(s) 324, 421, 583
BpiI GAAGAC 4 cut(s) 17, 103, 259, 525
BpmI CTGGAG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 589
Bse1I ACTGG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 351
BseGI GGATG 2 cut(s) 294, 598
BseLI CCNNNNNNNGG 2 cut(s) 202, 589
BseMII CTCAG 2 cut(s) 242, 359
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 483, 546
BseXI GCAGC 2 cut(s) 152, 706
Bsh1236I CGCG 2 cut(s) 413, 675
BshVI ATCGAT 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 202, 589
BsmAI GTCTC 1 cut(s) 614
Bsp143I GATC 6 cut(s) 244, 272, 348, 392, 451, 502
BspACI CCGC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 241, 358
BspDI ATCGAT 1 cut(s) 351
BspFNI CGCG 2 cut(s) 413, 675
BsrI ACTGG 1 cut(s) 244
BssMI GATC 6 cut(s) 244, 272, 348, 392, 451, 502
Bst4CI ACNGT 5 cut(s) 101, 488, 524, 547, 625
Bst6I CTCTTC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 179, 316
BstDEI CTNAG 3 cut(s) 90, 228, 345
BstF5I GGATG 2 cut(s) 294, 598
BstFNI CGCG 2 cut(s) 413, 675
BstKTI GATC 6 cut(s) 247, 275, 351, 395, 454, 505
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 6 cut(s) 244, 272, 348, 392, 451, 502
BstMWI GCNNNNNNNGC 2 cut(s) 419, 533
BstSFI CTRYAG 1 cut(s) 466
BstSNI TACGTA 1 cut(s) 10
BstUI CGCG 2 cut(s) 413, 675
BstV1I GCAGC 2 cut(s) 152, 706
BstV2I GAAGAC 4 cut(s) 17, 103, 259, 525
Bsu15I ATCGAT 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 351
BtsCI GGATG 2 cut(s) 294, 598
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 207, 529, 630
Cac8I GCNNGC 2 cut(s) 179, 316
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 4 cut(s) 7, 237, 489, 680
CviAII CATG 1 cut(s) 197
CviQI GTAC 4 cut(s) 7, 237, 489, 680
DdeI CTNAG 3 cut(s) 90, 228, 345
DpnI GATC 6 cut(s) 246, 274, 350, 394, 453, 504
DpnII GATC 6 cut(s) 244, 272, 348, 392, 451, 502
DraI TTTAAA 1 cut(s) 483
DriI GACNNNNNGTC 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 501
Eam1105I GACNNNNNGTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 501
Eco105I TACGTA 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 5 cut(s) 39, 93, 347, 569, 663
EcoRI GAATTC 1 cut(s) 438
FaeI CATG 1 cut(s) 200
FaiI YATR 7 cut(s) 150, 198, 219, 224, 320, 513, 724
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 141, 411, 720
FokI GGATG 2 cut(s) 281, 605
Fsp4HI GCNGC 3 cut(s) 141, 411, 720
FspBI CTAG 3 cut(s) 419, 425, 704
GluI GCNGC 3 cut(s) 141, 411, 720
GsuI CTGGAG 1 cut(s) 549
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 3 cut(s) 45, 163, 415
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 5 cut(s) 303, 348, 507, 588, 643
Hpy188III TCNNGA 3 cut(s) 115, 500, 686
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 4 cut(s) 14, 371, 593, 638
HpyCH4III ACNGT 5 cut(s) 101, 488, 524, 547, 625
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 7 cut(s) 140, 200, 318, 632, 651, 662, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 533
HpyF3I CTNAG 3 cut(s) 90, 228, 345
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 6 cut(s) 244, 272, 348, 392, 451, 502
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 9 cut(s) 30, 191, 225, 253, 350, 420, 459, 478, 513
Lsp1109I GCAGC 2 cut(s) 152, 706
LweI GCATC 3 cut(s) 324, 421, 583
MaeI CTAG 3 cut(s) 419, 425, 704
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 541, 576, 600
MalI GATC 6 cut(s) 246, 274, 350, 394, 453, 504
MboI GATC 6 cut(s) 244, 272, 348, 392, 451, 502
MboII GAAGA 6 cut(s) 17, 103, 199, 264, 488, 530
MfeI CAATTG 1 cut(s) 657
MluCI AATT 6 cut(s) 135, 260, 329, 438, 563, 657
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 6 cut(s) 51, 348, 377, 504, 524, 670
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 323, 482
MspA1I CMGCKG 1 cut(s) 143
MunI CAATTG 1 cut(s) 657
MvnI CGCG 2 cut(s) 413, 675
MwoI GCNNNNNNNGC 2 cut(s) 419, 533
NdeII GATC 6 cut(s) 244, 272, 348, 392, 451, 502
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 576
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 45, 163
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 3 cut(s) 142, 412, 721
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Ppu21I YACGTR 1 cut(s) 10
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 4 cut(s) 8, 238, 490, 681
RsaNI GTAC 4 cut(s) 7, 237, 489, 680
SaqAI TTAA 2 cut(s) 323, 482
SatI GCNGC 3 cut(s) 141, 411, 720
Sau3AI GATC 6 cut(s) 244, 272, 348, 392, 451, 502
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 2 cut(s) 238, 490
SchI GAGTC 1 cut(s) 409
SfaNI GCATC 3 cut(s) 324, 421, 583
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 10
Sse9I AATT 6 cut(s) 135, 260, 329, 438, 563, 657
SsiI CCGC 1 cut(s) 411
SspMI CTAG 3 cut(s) 419, 425, 704
TaaI ACNGT 5 cut(s) 101, 488, 524, 547, 625
TaiI ACGT 1 cut(s) 12
TaqI TCGA 4 cut(s) 28, 114, 264, 351
TasI AATT 6 cut(s) 135, 260, 329, 438, 563, 657
TatI WGTACW 2 cut(s) 236, 488
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 45, 163
Tru1I TTAA 2 cut(s) 323, 482
Tru9I TTAA 2 cut(s) 323, 482
TscAI CASTG 3 cut(s) 207, 529, 630
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 2 cut(s) 140, 719
Tsp45I GTSAC 1 cut(s) 576
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 207, 529, 630
Van91I CCANNNNNTGG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 260, 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 3 cut(s) 419, 425, 704
ZrmI AGTACT 2 cut(s) 238, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.